Protein–RNA interactions for Protein: P35542

SAA4, Serum amyloid A-4 protein, humanhuman

Predictions only

Length 130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SAA4P35542 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC20.85■□□□□ 0.93
SAA4P35542 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SAA4P35542 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SAA4P35542 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SAA4P35542 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC20.84■□□□□ 0.93
SAA4P35542 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.84■□□□□ 0.93
SAA4P35542 CHST11-202ENST00000546689 756 ntTSL 2 BASIC20.84■□□□□ 0.93
SAA4P35542 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SAA4P35542 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
SAA4P35542 MIR4449-201ENST00000578365 66 ntBASIC20.83■□□□□ 0.93
SAA4P35542 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SAA4P35542 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SAA4P35542 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SAA4P35542 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SAA4P35542 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC20.82■□□□□ 0.92
SAA4P35542 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SAA4P35542 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
SAA4P35542 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SAA4P35542 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SAA4P35542 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SAA4P35542 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SAA4P35542 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SAA4P35542 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SAA4P35542 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SAA4P35542 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SAA4P35542 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SAA4P35542 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
SAA4P35542 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SAA4P35542 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
SAA4P35542 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC20.79■□□□□ 0.92
SAA4P35542 METRNL-202ENST00000570778 967 ntTSL 5 BASIC20.79■□□□□ 0.92
SAA4P35542 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC20.78■□□□□ 0.92
SAA4P35542 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
SAA4P35542 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.78■□□□□ 0.92
SAA4P35542 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
SAA4P35542 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
SAA4P35542 AP004833.2-201ENST00000532228 1454 ntBASIC20.77■□□□□ 0.92
SAA4P35542 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
SAA4P35542 MEST-211ENST00000437945 1455 ntTSL 5 BASIC20.76■□□□□ 0.91
SAA4P35542 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
SAA4P35542 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC20.76■□□□□ 0.91
SAA4P35542 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SAA4P35542 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SAA4P35542 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC20.76■□□□□ 0.91
SAA4P35542 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SAA4P35542 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC20.75■□□□□ 0.91
SAA4P35542 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.75■□□□□ 0.91
SAA4P35542 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC20.75■□□□□ 0.91
SAA4P35542 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SAA4P35542 AC110285.7-201ENST00000624417 1536 ntBASIC20.74■□□□□ 0.91
SAA4P35542 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SAA4P35542 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SAA4P35542 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SAA4P35542 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SAA4P35542 AL139393.2-201ENST00000608721 2025 ntBASIC20.73■□□□□ 0.91
SAA4P35542 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.73■□□□□ 0.91
SAA4P35542 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC20.72■□□□□ 0.91
SAA4P35542 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SAA4P35542 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SAA4P35542 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SAA4P35542 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SAA4P35542 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SAA4P35542 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SAA4P35542 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SAA4P35542 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SAA4P35542 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC20.71■□□□□ 0.91
SAA4P35542 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SAA4P35542 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SAA4P35542 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SAA4P35542 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC20.7■□□□□ 0.9
SAA4P35542 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SAA4P35542 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SAA4P35542 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SAA4P35542 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SAA4P35542 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.69■□□□□ 0.9
SAA4P35542 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SAA4P35542 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SAA4P35542 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SAA4P35542 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.68■□□□□ 0.9
SAA4P35542 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC20.68■□□□□ 0.9
SAA4P35542 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SAA4P35542 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SAA4P35542 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SAA4P35542 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.67■□□□□ 0.9
SAA4P35542 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
SAA4P35542 AC100797.4-201ENST00000631653 1827 ntBASIC20.67■□□□□ 0.9
SAA4P35542 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SAA4P35542 AC008813.1-201ENST00000536597 885 ntBASIC20.66■□□□□ 0.9
SAA4P35542 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC20.66■□□□□ 0.9
SAA4P35542 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SAA4P35542 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.65■□□□□ 0.9
SAA4P35542 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SAA4P35542 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SAA4P35542 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
SAA4P35542 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.64■□□□□ 0.9
SAA4P35542 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.64■□□□□ 0.9
SAA4P35542 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.64■□□□□ 0.9
SAA4P35542 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SAA4P35542 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SAA4P35542 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms