RNA–Protein interactions for RNA: ENST00000564390.1

AC009041.3-201, humanhuman

TSL 5 BASIC

Gene AC009041.3, Length 879 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC009041.3-201ENST00000564390 NISCHQ9Y2I1 1504 aa62.47■■■■■ 7.59
AC009041.3-201ENST00000564390 CCDC180Q9P1Z9 1646 aa55.8■■■■■ 6.52
AC009041.3-201ENST00000564390 ABCC9O60706 1549 aa55.19■■■■■ 6.43
AC009041.3-201ENST00000564390 RB1CC1Q8TDY2 1594 aa52.77■■■■■ 6.04
AC009041.3-201ENST00000564390 NACADO15069 1562 aa52.54■■■■■ 6
AC009041.3-201ENST00000564390 DCAF8L2P0C7V8 631 aa52.42■■■■■ 5.98
AC009041.3-201ENST00000564390 MYO15BQ96JP2 1530 aa51.98■■■■■ 5.91
AC009041.3-201ENST00000564390 ZCCHC6Q5VYS8 1495 aaKnown RBP51.95■■■■■ 5.91
AC009041.3-201ENST00000564390 UNC13AQ9UPW8 1703 aa51.67■■■■■ 5.86
AC009041.3-201ENST00000564390 DCAF1Q9Y4B6 1507 aa51.59■■■■■ 5.85
AC009041.3-201ENST00000564390 PABPN1Q86U42 306 aaKnown RBP eCLIP51.44■■■■■ 5.83
AC009041.3-201ENST00000564390 BICRAQ9NZM4 1560 aa51.25■■■■■ 5.79
AC009041.3-201ENST00000564390 DNAJC5BQ9UF47 199 aa51.09■■■■■ 5.77
AC009041.3-201ENST00000564390 SCRIBQ14160 1630 aa50.98■■■■■ 5.75
AC009041.3-201ENST00000564390 SHROOM4Q9ULL8 1493 aa50.53■■■■■ 5.68
AC009041.3-201ENST00000564390 EIF4G1Q04637 1599 aaKnown RBP49.92■■■■■ 5.58
AC009041.3-201ENST00000564390 CC2D2AQ9P2K1 1620 aa49.88■■■■■ 5.58
AC009041.3-201ENST00000564390 CECR2Q9BXF3 1484 aa49.59■■■■■ 5.53
AC009041.3-201ENST00000564390 SMARCA4P51532 1647 aa48.65■■■■■ 5.38
AC009041.3-201ENST00000564390 NCAPD3P42695 1498 aa48.46■■■■■ 5.35
AC009041.3-201ENST00000564390 ATAD2BQ9ULI0 1458 aa48.46■■■■■ 5.35
AC009041.3-201ENST00000564390 BAZ1AQ9NRL2 1556 aaPredicted RBP48.46■■■■■ 5.35
AC009041.3-201ENST00000564390 SMARCA2P51531 1590 aa48.37■■■■■ 5.33
AC009041.3-201ENST00000564390 HMGXB3Q12766 1538 aa48.23■■■■■ 5.31
AC009041.3-201ENST00000564390 MROH2BQ7Z745 1585 aa48.19■■■■■ 5.31
AC009041.3-201ENST00000564390 PEG3Q9GZU2 1588 aa48.1■■■■■ 5.29
AC009041.3-201ENST00000564390 BAZ1BQ9UIG0 1483 aaKnown RBP48.06■■■■■ 5.28
AC009041.3-201ENST00000564390 WIZO95785 1651 aa47.68■■■■■ 5.22
AC009041.3-201ENST00000564390 NESP48681 1621 aa47.61■■■■■ 5.21
AC009041.3-201ENST00000564390 ERCC6Q03468 1493 aa47.58■■■■■ 5.21
AC009041.3-201ENST00000564390 RSF1Q96T23 1441 aaPredicted RBP47.39■■■■■ 5.18
AC009041.3-201ENST00000564390 LAMC3Q9Y6N6 1575 aa47.32■■■■■ 5.17
AC009041.3-201ENST00000564390 CUX2O14529 1486 aa47.21■■■■■ 5.15
AC009041.3-201ENST00000564390 TOP2AP11388 1531 aaKnown RBP47.09■■■■■ 5.13
AC009041.3-201ENST00000564390 KIF21AQ7Z4S6 1674 aa47.06■■■■■ 5.12
AC009041.3-201ENST00000564390 CADPSQ9ULU8 1353 aa47.03■■■■■ 5.12
AC009041.3-201ENST00000564390 THOC2Q8NI27 1593 aaKnown RBP47.01■■■■■ 5.12
AC009041.3-201ENST00000564390 PDS5BQ9NTI5 1447 aa46.97■■■■■ 5.11
AC009041.3-201ENST00000564390 CFTRP13569 1480 aa46.66■■■■■ 5.06
AC009041.3-201ENST00000564390 MRC2Q9UBG0 1479 aa46.6■■■■■ 5.05
AC009041.3-201ENST00000564390 FANCD2Q9BXW9 1451 aa46.56■■■■■ 5.04
AC009041.3-201ENST00000564390 CEP164Q9UPV0 1460 aa46.56■■■■■ 5.04
AC009041.3-201ENST00000564390 CCDC88BA6NC98 1476 aa46.51■■■■■ 5.04
AC009041.3-201ENST00000564390 WDR62O43379 1518 aa46.47■■■■■ 5.03
AC009041.3-201ENST00000564390 PRDM2Q13029 1718 aa46.35■■■■■ 5.01
AC009041.3-201ENST00000564390 DNAJC5Q9H3Z4 198 aa46.35■■■■■ 5.01
AC009041.3-201ENST00000564390 URB2Q14146 1524 aaKnown RBP46.16■■■■■ 4.98
AC009041.3-201ENST00000564390 SUPT5HO00267 1087 aaKnown RBP45.81■■■■■ 4.92
AC009041.3-201ENST00000564390 TOPBP1Q92547 1522 aa45.77■■■■■ 4.92
AC009041.3-201ENST00000564390 DNMBPQ6XZF7 1577 aa45.67■■■■■ 4.9
AC009041.3-201ENST00000564390 ABCC8Q09428 1581 aa45.61■■■■■ 4.89
AC009041.3-201ENST00000564390 IFT140Q96RY7 1462 aa45.56■■■■■ 4.88
AC009041.3-201ENST00000564390 ZNF608Q9ULD9 1512 aaPredicted RBP45.49■■■■■ 4.87
AC009041.3-201ENST00000564390 POLA1P09884 1462 aaPredicted RBP45.35■■■■■ 4.85
AC009041.3-201ENST00000564390 TARBP1Q13395 1621 aaKnown RBP45.32■■■■■ 4.85
AC009041.3-201ENST00000564390 EIF4G3O43432 1585 aaKnown RBP45.32■■■■■ 4.85
AC009041.3-201ENST00000564390 CUX1P39880 1505 aa45.25■■■■■ 4.83
AC009041.3-201ENST00000564390 FGD5Q6ZNL6 1462 aa45.17■■■■■ 4.82
AC009041.3-201ENST00000564390 RAD54L2Q9Y4B4 1467 aa45.17■■■■■ 4.82
AC009041.3-201ENST00000564390 AQRO60306 1485 aaKnown RBP eCLIP45.13■■■■■ 4.82
AC009041.3-201ENST00000564390 SOGA1O94964 1423 aa45.09■■■■■ 4.81
AC009041.3-201ENST00000564390 OSCARQ8IYS5 282 aa45.09■■■■■ 4.81
AC009041.3-201ENST00000564390 TDRD9Q8NDG6 1382 aaKnown RBP44.94■■■■■ 4.79
AC009041.3-201ENST00000564390 CHD1O14646 1710 aa44.87■■■■■ 4.77
AC009041.3-201ENST00000564390 WDR97A6NE52 1622 aa44.86■■■■■ 4.77
AC009041.3-201ENST00000564390 SNAPC4Q5SXM2 1469 aa44.73■■■■■ 4.75
AC009041.3-201ENST00000564390 SYNJ1O43426 1573 aa44.71■■■■■ 4.75
AC009041.3-201ENST00000564390 TRIM41Q8WV44 630 aa44.71■■■■■ 4.75
AC009041.3-201ENST00000564390 BIVM-ERCC5R4GMW8 1640 aa44.71■■■■■ 4.75
AC009041.3-201ENST00000564390 WRNQ14191 1432 aaPredicted RBP eCLIP44.7■■■■■ 4.75
AC009041.3-201ENST00000564390 TOP2BQ02880 1626 aa44.68■■■■■ 4.74
AC009041.3-201ENST00000564390 FBLN2P98095 1184 aa44.68■■■■■ 4.74
AC009041.3-201ENST00000564390 ABCA10Q8WWZ4 1543 aa44.65■■■■■ 4.74
AC009041.3-201ENST00000564390 GRIN2BQ13224 1484 aa44.65■■■■■ 4.74
AC009041.3-201ENST00000564390 PBRM1Q86U86 1689 aa44.62■■■■■ 4.73
AC009041.3-201ENST00000564390 RIMBP3CA6NJZ7 1639 aa44.59■■■■■ 4.73
AC009041.3-201ENST00000564390 RIMBP3BA6NNM3 1639 aa44.59■■■■■ 4.73
AC009041.3-201ENST00000564390 ABCA5Q8WWZ7 1642 aa44.59■■■■■ 4.73
AC009041.3-201ENST00000564390 RIMBP3Q9UFD9 1639 aa44.59■■■■■ 4.73
AC009041.3-201ENST00000564390 GAPVD1Q14C86 1478 aa44.59■■■■■ 4.73
AC009041.3-201ENST00000564390 MAGI1Q96QZ7 1491 aaPredicted RBP44.58■■■■■ 4.73
AC009041.3-201ENST00000564390 ARHGEF11O15085 1522 aa44.5■■■■■ 4.71
AC009041.3-201ENST00000564390 SYNJ2O15056 1496 aa44.42■■■■■ 4.7
AC009041.3-201ENST00000564390 CHMP7Q8WUX9 453 aaPredicted RBP44.41■■■■■ 4.7
AC009041.3-201ENST00000564390 CLASP1Q7Z460 1538 aa44.31■■■■■ 4.68
AC009041.3-201ENST00000564390 ADAMTS12P58397 1594 aa44.22■■■■■ 4.67
AC009041.3-201ENST00000564390 ARAP1Q96P48 1450 aa44.12■■■■■ 4.65
AC009041.3-201ENST00000564390 ERICH3Q5RHP9 1530 aa44.1■■■■■ 4.65
AC009041.3-201ENST00000564390 GRIN2AQ12879 1464 aa44.1■■■■■ 4.65
AC009041.3-201ENST00000564390 CYB5RLQ6IPT4 315 aa44.05■■■■■ 4.64
AC009041.3-201ENST00000564390 FHAD1B1AJZ9 1412 aa44.03■■■■■ 4.64
AC009041.3-201ENST00000564390 CEP170Q5SW79 1584 aa43.96■■■■■ 4.63
AC009041.3-201ENST00000564390 NUP160Q12769 1436 aa43.9■■■■■ 4.62
AC009041.3-201ENST00000564390 KIF27Q86VH2 1401 aa43.77■■■■■ 4.6
AC009041.3-201ENST00000564390 ERCC6L2Q5T890 1561 aa43.72■■■■■ 4.59
AC009041.3-201ENST00000564390 SHROOM2Q13796 1616 aa43.67■■■■■ 4.58
AC009041.3-201ENST00000564390 IGF1RP08069 1367 aa43.65■■■■■ 4.58
AC009041.3-201ENST00000564390 CUL7Q14999 1698 aa43.64■■■■■ 4.58
AC009041.3-201ENST00000564390 RUSC2Q8N2Y8 1516 aa43.59■■■■■ 4.57
AC009041.3-201ENST00000564390 PRG4Q92954 1404 aaPredicted RBP43.43■■■■■ 4.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms