RNA–Protein interactions for RNA: ENST00000626716.1

R3HDM4-208, Transcript of R3H domain containing 4, humanhuman

TSL 5 BASIC

Gene R3HDM4, Length 138 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
R3HDM4-208ENST00000626716 NISCHQ9Y2I1 1504 aa63.19■■■■■ 7.71
R3HDM4-208ENST00000626716 ABCC9O60706 1549 aa56.7■■■■■ 6.67
R3HDM4-208ENST00000626716 CCDC180Q9P1Z9 1646 aa56.66■■■■■ 6.66
R3HDM4-208ENST00000626716 RB1CC1Q8TDY2 1594 aa53.97■■■■■ 6.23
R3HDM4-208ENST00000626716 NACADO15069 1562 aa53.61■■■■■ 6.17
R3HDM4-208ENST00000626716 DCAF8L2P0C7V8 631 aa53.45■■■■■ 6.15
R3HDM4-208ENST00000626716 DNAJC5BQ9UF47 199 aa53.25■■■■■ 6.11
R3HDM4-208ENST00000626716 MYO15BQ96JP2 1530 aa52.87■■■■■ 6.05
R3HDM4-208ENST00000626716 PABPN1Q86U42 306 aaKnown RBP eCLIP52.86■■■■■ 6.05
R3HDM4-208ENST00000626716 UNC13AQ9UPW8 1703 aa52.72■■■■■ 6.03
R3HDM4-208ENST00000626716 BICRAQ9NZM4 1560 aa52.38■■■■■ 5.98
R3HDM4-208ENST00000626716 ZCCHC6Q5VYS8 1495 aaKnown RBP52.33■■■■■ 5.97
R3HDM4-208ENST00000626716 DCAF1Q9Y4B6 1507 aa52.2■■■■■ 5.95
R3HDM4-208ENST00000626716 SHROOM4Q9ULL8 1493 aa51.67■■■■■ 5.86
R3HDM4-208ENST00000626716 SCRIBQ14160 1630 aa51.63■■■■■ 5.86
R3HDM4-208ENST00000626716 CC2D2AQ9P2K1 1620 aa51.21■■■■■ 5.79
R3HDM4-208ENST00000626716 EIF4G1Q04637 1599 aaKnown RBP51.1■■■■■ 5.77
R3HDM4-208ENST00000626716 CECR2Q9BXF3 1484 aa51.09■■■■■ 5.77
R3HDM4-208ENST00000626716 NCAPD3P42695 1498 aa49.52■■■■■ 5.52
R3HDM4-208ENST00000626716 ATAD2BQ9ULI0 1458 aa49.35■■■■■ 5.49
R3HDM4-208ENST00000626716 SMARCA4P51532 1647 aa49.27■■■■■ 5.48
R3HDM4-208ENST00000626716 SMARCA2P51531 1590 aa49.2■■■■■ 5.47
R3HDM4-208ENST00000626716 HMGXB3Q12766 1538 aa49.09■■■■■ 5.45
R3HDM4-208ENST00000626716 BAZ1AQ9NRL2 1556 aaPredicted RBP49.04■■■■■ 5.44
R3HDM4-208ENST00000626716 ERCC6Q03468 1493 aa48.97■■■■■ 5.43
R3HDM4-208ENST00000626716 DNAJC5Q9H3Z4 198 aa48.93■■■■■ 5.42
R3HDM4-208ENST00000626716 CUX2O14529 1486 aa48.87■■■■■ 5.41
R3HDM4-208ENST00000626716 BAZ1BQ9UIG0 1483 aaKnown RBP48.86■■■■■ 5.41
R3HDM4-208ENST00000626716 PEG3Q9GZU2 1588 aa48.79■■■■■ 5.4
R3HDM4-208ENST00000626716 NESP48681 1621 aa48.7■■■■■ 5.39
R3HDM4-208ENST00000626716 MROH2BQ7Z745 1585 aa48.68■■■■■ 5.38
R3HDM4-208ENST00000626716 LAMC3Q9Y6N6 1575 aa48.37■■■■■ 5.33
R3HDM4-208ENST00000626716 THOC2Q8NI27 1593 aaKnown RBP48.16■■■■■ 5.3
R3HDM4-208ENST00000626716 PDS5BQ9NTI5 1447 aa48.14■■■■■ 5.3
R3HDM4-208ENST00000626716 WIZO95785 1651 aa48.09■■■■■ 5.29
R3HDM4-208ENST00000626716 KIF21AQ7Z4S6 1674 aa48.05■■■■■ 5.28
R3HDM4-208ENST00000626716 CADPSQ9ULU8 1353 aa48.03■■■■■ 5.28
R3HDM4-208ENST00000626716 RSF1Q96T23 1441 aaPredicted RBP47.7■■■■■ 5.23
R3HDM4-208ENST00000626716 MRC2Q9UBG0 1479 aa47.67■■■■■ 5.22
R3HDM4-208ENST00000626716 WDR62O43379 1518 aa47.53■■■■■ 5.2
R3HDM4-208ENST00000626716 CEP164Q9UPV0 1460 aa47.48■■■■■ 5.19
R3HDM4-208ENST00000626716 TOP2AP11388 1531 aaKnown RBP47.47■■■■■ 5.19
R3HDM4-208ENST00000626716 CFTRP13569 1480 aa47.46■■■■■ 5.19
R3HDM4-208ENST00000626716 FANCD2Q9BXW9 1451 aa47.45■■■■■ 5.19
R3HDM4-208ENST00000626716 URB2Q14146 1524 aaKnown RBP47.04■■■■■ 5.12
R3HDM4-208ENST00000626716 CCDC88BA6NC98 1476 aa46.99■■■■■ 5.11
R3HDM4-208ENST00000626716 PRDM2Q13029 1718 aa46.93■■■■■ 5.1
R3HDM4-208ENST00000626716 TRIM41Q8WV44 630 aa46.76■■■■■ 5.08
R3HDM4-208ENST00000626716 OSCARQ8IYS5 282 aa46.75■■■■■ 5.07
R3HDM4-208ENST00000626716 IFT140Q96RY7 1462 aa46.56■■■■■ 5.04
R3HDM4-208ENST00000626716 TOPBP1Q92547 1522 aa46.54■■■■■ 5.04
R3HDM4-208ENST00000626716 ABCC8Q09428 1581 aa46.49■■■■■ 5.03
R3HDM4-208ENST00000626716 ZNF608Q9ULD9 1512 aaPredicted RBP46.47■■■■■ 5.03
R3HDM4-208ENST00000626716 DNMBPQ6XZF7 1577 aa46.35■■■■■ 5.01
R3HDM4-208ENST00000626716 EIF4G3O43432 1585 aaKnown RBP46.16■■■■■ 4.98
R3HDM4-208ENST00000626716 TARBP1Q13395 1621 aaKnown RBP46.12■■■■■ 4.97
R3HDM4-208ENST00000626716 AQRO60306 1485 aaKnown RBP eCLIP46.08■■■■■ 4.97
R3HDM4-208ENST00000626716 POLA1P09884 1462 aaPredicted RBP46.06■■■■■ 4.96
R3HDM4-208ENST00000626716 RIMBP3CA6NJZ7 1639 aa46.01■■■■■ 4.96
R3HDM4-208ENST00000626716 RIMBP3BA6NNM3 1639 aa46.01■■■■■ 4.96
R3HDM4-208ENST00000626716 RIMBP3Q9UFD9 1639 aa46.01■■■■■ 4.96
R3HDM4-208ENST00000626716 SOGA1O94964 1423 aa45.91■■■■■ 4.94
R3HDM4-208ENST00000626716 RAD54L2Q9Y4B4 1467 aa45.91■■■■■ 4.94
R3HDM4-208ENST00000626716 ARHGEF11O15085 1522 aa45.87■■■■■ 4.93
R3HDM4-208ENST00000626716 CHD1O14646 1710 aa45.84■■■■■ 4.93
R3HDM4-208ENST00000626716 FBLN2P98095 1184 aa45.83■■■■■ 4.93
R3HDM4-208ENST00000626716 TDRD9Q8NDG6 1382 aaKnown RBP45.81■■■■■ 4.92
R3HDM4-208ENST00000626716 FGD5Q6ZNL6 1462 aa45.77■■■■■ 4.92
R3HDM4-208ENST00000626716 CUX1P39880 1505 aa45.73■■■■■ 4.91
R3HDM4-208ENST00000626716 SUPT5HO00267 1087 aaKnown RBP45.65■■■■■ 4.9
R3HDM4-208ENST00000626716 WDR97A6NE52 1622 aa45.65■■■■■ 4.9
R3HDM4-208ENST00000626716 CYB5RLQ6IPT4 315 aa45.64■■■■■ 4.9
R3HDM4-208ENST00000626716 SNAPC4Q5SXM2 1469 aa45.56■■■■■ 4.88
R3HDM4-208ENST00000626716 CHMP7Q8WUX9 453 aaPredicted RBP45.5■■■■■ 4.87
R3HDM4-208ENST00000626716 GRIN2BQ13224 1484 aa45.48■■■■■ 4.87
R3HDM4-208ENST00000626716 MAGI1Q96QZ7 1491 aaPredicted RBP45.47■■■■■ 4.87
R3HDM4-208ENST00000626716 ARAP1Q96P48 1450 aa45.42■■■■■ 4.86
R3HDM4-208ENST00000626716 GAPVD1Q14C86 1478 aa45.33■■■■■ 4.85
R3HDM4-208ENST00000626716 SYNJ2O15056 1496 aa45.32■■■■■ 4.85
R3HDM4-208ENST00000626716 SYNJ1O43426 1573 aa45.32■■■■■ 4.85
R3HDM4-208ENST00000626716 CLASP1Q7Z460 1538 aa45.31■■■■■ 4.84
R3HDM4-208ENST00000626716 ABCA10Q8WWZ4 1543 aa45.26■■■■■ 4.84
R3HDM4-208ENST00000626716 PBRM1Q86U86 1689 aa45.25■■■■■ 4.83
R3HDM4-208ENST00000626716 ABCA5Q8WWZ7 1642 aa45.15■■■■■ 4.82
R3HDM4-208ENST00000626716 TRHP20396 242 aaPredicted RBP45.13■■■■■ 4.82
R3HDM4-208ENST00000626716 WRNQ14191 1432 aaPredicted RBP eCLIP45.12■■■■■ 4.81
R3HDM4-208ENST00000626716 TOP2BQ02880 1626 aa45■■■■■ 4.79
R3HDM4-208ENST00000626716 BIVM-ERCC5R4GMW8 1640 aa44.98■■■■■ 4.79
R3HDM4-208ENST00000626716 GRIN2AQ12879 1464 aa44.87■■■■■ 4.77
R3HDM4-208ENST00000626716 ADAMTS12P58397 1594 aa44.8■■■■■ 4.76
R3HDM4-208ENST00000626716 FHAD1B1AJZ9 1412 aa44.75■■■■■ 4.76
R3HDM4-208ENST00000626716 NUP160Q12769 1436 aa44.73■■■■■ 4.75
R3HDM4-208ENST00000626716 ERICH3Q5RHP9 1530 aa44.7■■■■■ 4.75
R3HDM4-208ENST00000626716 CEP170Q5SW79 1584 aa44.69■■■■■ 4.74
R3HDM4-208ENST00000626716 ERCC6L2Q5T890 1561 aa44.61■■■■■ 4.73
R3HDM4-208ENST00000626716 SHROOM2Q13796 1616 aa44.5■■■■■ 4.71
R3HDM4-208ENST00000626716 JPH4Q96JJ6 628 aa44.37■■■■■ 4.69
R3HDM4-208ENST00000626716 PRG4Q92954 1404 aaPredicted RBP44.33■■■■■ 4.69
R3HDM4-208ENST00000626716 IGF1RP08069 1367 aa44.18■■■■■ 4.66
R3HDM4-208ENST00000626716 KIF27Q86VH2 1401 aa44.17■■■■■ 4.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms