Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 REPIN1-205ENST00000467980 899 ntTSL 323.61■■□□□ 1.375e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.49■■□□□ 1.355e-6■■□□□ 12.5
SMNDC1O75940 ATXN7-205ENST00000474513 728 ntTSL 1 (best)23.18■■□□□ 1.35e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.215e-6■■□□□ 12.5
SMNDC1O75940 GUSB-203ENST00000430730 1859 ntTSL 522.56■■□□□ 1.22e-8■■□□□ 12.5
SMNDC1O75940 REPIN1-206ENST00000469309 910 ntTSL 222.3■■□□□ 1.165e-6■■□□□ 12.5
SMNDC1O75940 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.162e-8■■□□□ 12.5
SMNDC1O75940 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.095e-6■■□□□ 12.5
SMNDC1O75940 NARF-207ENST00000577410 873 ntTSL 521.79■■□□□ 1.085e-6■■□□□ 12.5
SMNDC1O75940 MAPK12-207ENST00000492218 498 ntTSL 421.37■■□□□ 1.015e-6■■□□□ 12.5
SMNDC1O75940 CPSF1-202ENST00000527827 619 ntTSL 221.3■■□□□ 19e-12■■□□□ 12.5
SMNDC1O75940 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.962e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-215ENST00000495535 672 ntTSL 320.88■□□□□ 0.935e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-219ENST00000522266 480 ntTSL 220.88■□□□□ 0.935e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.565e-6■■□□□ 12.5
SMNDC1O75940 ATXN7-204ENST00000474112 3367 ntTSL 218.54■□□□□ 0.565e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-213ENST00000488943 1262 ntTSL 518.48■□□□□ 0.555e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-208ENST00000475514 1192 ntTSL 518.3■□□□□ 0.525e-6■■□□□ 12.5
SMNDC1O75940 ESRRA-205ENST00000468670 742 ntTSL 218.29■□□□□ 0.522e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-207ENST00000473391 1064 ntTSL 218.15■□□□□ 0.55e-6■■□□□ 12.5
SMNDC1O75940 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.475e-6■■□□□ 12.5
SMNDC1O75940 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.465e-6■■□□□ 12.5
SMNDC1O75940 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.7■□□□□ 0.425e-6■■□□□ 12.5
SMNDC1O75940 GUSB-209ENST00000466883 2555 ntTSL 217.13■□□□□ 0.332e-8■■□□□ 12.5
SMNDC1O75940 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC17.04■□□□□ 0.325e-6■■□□□ 12.5
SMNDC1O75940 IRF3-231ENST00000602190 413 ntTSL 316.48■□□□□ 0.235e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.39■□□□□ 0.215e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.215e-6■■□□□ 12.5
SMNDC1O75940 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.27■□□□□ 0.25e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.23■□□□□ 0.195e-6■■□□□ 12.5
SMNDC1O75940 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.155e-6■■□□□ 12.5
SMNDC1O75940 XAB2-203ENST00000596134 543 ntTSL 215.49■□□□□ 0.075e-6■■□□□ 12.5
SMNDC1O75940 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.36■□□□□ 0.055e-6■■□□□ 12.5
SMNDC1O75940 NARF-217ENST00000581743 785 ntTSL 515.13■□□□□ 0.015e-6■■□□□ 12.5
SMNDC1O75940 GLI4-205ENST00000519876 585 ntTSL 315.05■□□□□ -05e-6■■□□□ 12.5
SMNDC1O75940 XAB2-204ENST00000600230 749 ntTSL 314.97□□□□□ -0.015e-6■■□□□ 12.5
SMNDC1O75940 GUSB-213ENST00000479038 452 ntTSL 314.88□□□□□ -0.032e-8■■□□□ 12.5
SMNDC1O75940 CHTF18-215ENST00000564940 197 ntTSL 214.8□□□□□ -0.045e-6■■□□□ 12.5
SMNDC1O75940 UBC-208ENST00000540700 627 ntTSL 214.73□□□□□ -0.055e-6■■□□□ 12.5
SMNDC1O75940 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.095e-6■■□□□ 12.5
SMNDC1O75940 HCLS1-205ENST00000473883 2710 ntTSL 214.41□□□□□ -0.15e-6■■□□□ 12.5
SMNDC1O75940 SBNO2-205ENST00000587655 914 ntTSL 314.22□□□□□ -0.135e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-218ENST00000519397 583 ntTSL 414.12□□□□□ -0.155e-6■■□□□ 12.5
SMNDC1O75940 HCLS1-203ENST00000464274 552 ntTSL 413.56□□□□□ -0.245e-6■■□□□ 12.5
SMNDC1O75940 UBC-204ENST00000536661 624 ntTSL 213.43□□□□□ -0.265e-6■■□□□ 12.5
SMNDC1O75940 GUSB-208ENST00000465785 625 ntTSL 213.32□□□□□ -0.282e-8■■□□□ 12.5
SMNDC1O75940 PRRC2A-208ENST00000469577 918 ntTSL 513.26□□□□□ -0.295e-6■■□□□ 12.5
SMNDC1O75940 NARF-210ENST00000578082 841 ntTSL 412.86□□□□□ -0.355e-6■■□□□ 12.5
SMNDC1O75940 GUSB-207ENST00000462371 820 ntTSL 312.41□□□□□ -0.422e-8■■□□□ 12.5
SMNDC1O75940 GUSB-214ENST00000489482 519 ntTSL 211.96□□□□□ -0.492e-8■■□□□ 12.5
SMNDC1O75940 NCAPG2-201ENST00000356309 3930 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.545e-6■■□□□ 12.5
SMNDC1O75940 HCLS1-211ENST00000495491 1219 ntTSL 211.51□□□□□ -0.575e-6■■□□□ 12.5
SMNDC1O75940 UBC-213ENST00000546120 718 ntTSL 5 BASIC11.24□□□□□ -0.615e-6■■□□□ 12.5
SMNDC1O75940 RHOT2-220ENST00000569197 530 ntTSL 510.91□□□□□ -0.665e-6■■□□□ 12.5
SMNDC1O75940 UBC-214ENST00000546271 559 ntTSL 410.73□□□□□ -0.695e-6■■□□□ 12.5
SMNDC1O75940 MAPK12-202ENST00000395778 605 ntTSL 1 (best) BASIC10.22□□□□□ -0.775e-6■■□□□ 12.5
SMNDC1O75940 NCAPG2-205ENST00000441982 2926 ntTSL 29.9□□□□□ -0.825e-6■■□□□ 12.5
SMNDC1O75940 NCAPG2-204ENST00000432615 4134 ntTSL 59.13□□□□□ -0.955e-6■■□□□ 12.5
SMNDC1O75940 REPIN1-212ENST00000487455 464 ntTSL 48.49□□□□□ -1.055e-6■■□□□ 12.5
SMNDC1O75940 NCAPG2-203ENST00000409423 3957 ntAPPRIS P1 TSL 2 BASIC8.38□□□□□ -1.075e-6■■□□□ 12.5
SMNDC1O75940 NCAPG2-206ENST00000467785 3276 ntTSL 1 (best)8.21□□□□□ -1.15e-6■■□□□ 12.5
SMNDC1O75940 GUSB-210ENST00000475316 505 ntTSL 38.18□□□□□ -1.12e-8■■□□□ 12.5
SMNDC1O75940 UBC-211ENST00000542416 517 ntTSL 48.12□□□□□ -1.115e-6■■□□□ 12.5
SMNDC1O75940 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC7.09□□□□□ -1.275e-6■■□□□ 12.5
SMNDC1O75940 SNORD53B-201ENST00000577887 78 ntBASIC1.47□□□□□ -2.171e-323■■□□□ 12.5
SMNDC1O75940 PRRC2C-212ENST00000498596 1066 ntTSL 310.33□□□□□ -0.765e-8■■□□□ 12.4
SMNDC1O75940 PRRC2C-210ENST00000492811 379 ntTSL 27.41□□□□□ -1.225e-8■■□□□ 12.4
SMNDC1O75940 PRRC2C-211ENST00000495585 5566 ntTSL 1 (best)5.15□□□□□ -1.585e-8■■□□□ 12.4
SMNDC1O75940 BAIAP2L1-201ENST00000005260 3622 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.256e-12■■□□□ 12.4
SMNDC1O75940 BAIAP2L1-205ENST00000480580 689 ntTSL 410.24□□□□□ -0.776e-12■■□□□ 12.4
SMNDC1O75940 SRCAP-202ENST00000395059 9126 ntTSL 2 BASIC11.07□□□□□ -0.642e-7■■□□□ 12.4
SMNDC1O75940 AC106886.5-201ENST00000380361 11692 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.092e-7■■□□□ 12.4
SMNDC1O75940 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC7.91□□□□□ -1.142e-7■■□□□ 12.4
SMNDC1O75940 DDX39A-221ENST00000593026 657 ntTSL 313.3□□□□□ -0.285e-10■■□□□ 12.4
SMNDC1O75940 MTHFR-201ENST00000376486 875 ntTSL 1 (best)17.47■□□□□ 0.396e-7■■□□□ 12.4
SMNDC1O75940 MTHFR-216ENST00000641805 2945 nt15.1■□□□□ 0.016e-7■■□□□ 12.4
SMNDC1O75940 MTHFR-210ENST00000641407 2387 ntBASIC14.87□□□□□ -0.036e-7■■□□□ 12.4
SMNDC1O75940 MTHFR-212ENST00000641446 2820 nt14.55□□□□□ -0.086e-7■■□□□ 12.4
SMNDC1O75940 MTHFR-215ENST00000641759 2454 nt13.18□□□□□ -0.36e-7■■□□□ 12.4
SMNDC1O75940 MTHFR-202ENST00000376583 7044 ntAPPRIS ALT1 TSL 5 BASIC12.61□□□□□ -0.396e-7■■□□□ 12.4
SMNDC1O75940 MTHFR-214ENST00000641747 3227 nt12.59□□□□□ -0.396e-7■■□□□ 12.4
SMNDC1O75940 MTHFR-205ENST00000376592 8378 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.416e-7■■□□□ 12.4
SMNDC1O75940 MTHFR-204ENST00000376590 7094 ntAPPRIS P3 TSL 1 (best) BASIC12.15□□□□□ -0.466e-7■■□□□ 12.4
SMNDC1O75940 MTHFR-203ENST00000376585 8094 ntAPPRIS ALT1 TSL 5 BASIC11.65□□□□□ -0.546e-7■■□□□ 12.4
SMNDC1O75940 MTHFR-213ENST00000641721 891 nt9.63□□□□□ -0.876e-7■■□□□ 12.4
SMNDC1O75940 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.717e-9■■□□□ 12.4
SMNDC1O75940 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC12.51□□□□□ -0.417e-9■■□□□ 12.4
SMNDC1O75940 GOLGA3-207ENST00000545875 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC11.35□□□□□ -0.597e-9■■□□□ 12.4
SMNDC1O75940 CKAP5-211ENST00000532321 586 ntTSL 44.99□□□□□ -1.619e-9■■□□□ 12.4
SMNDC1O75940 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.165e-10■■□□□ 12.4
SMNDC1O75940 NECAB3-207ENST00000478237 827 ntTSL 220.2■□□□□ 0.824e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-212ENST00000485976 1016 ntTSL 520.2■□□□□ 0.824e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-213ENST00000488489 2142 ntTSL 220.03■□□□□ 0.84e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.674e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-211ENST00000485399 1373 ntTSL 219.19■□□□□ 0.664e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-222ENST00000607805 969 ntTSL 518.95■□□□□ 0.624e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-218ENST00000606525 2010 ntTSL 218.82■□□□□ 0.64e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-209ENST00000483813 1277 ntTSL 518.16■□□□□ 0.54e-6■■□□□ 12.4
SMNDC1O75940 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.06■□□□□ 0.484e-6■■□□□ 12.4
SMNDC1O75940 GRSF1-202ENST00000499044 2491 ntTSL 217.61■□□□□ 0.415e-9■■□□□ 12.4
Retrieved 100 of 11,362 protein–RNA pairs in 50.4 ms