RNA–Protein interactions for RNA: ENST00000488943.1

REPIN1-213, Transcript of replication initiator 1, human

TSL 5

Gene REPIN1, Length 1,262 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
REPIN1-213	ENST00000488943	NISCH	Q9Y2I1	1504 aa		51.66	■■■■■ 5.86
REPIN1-213	ENST00000488943	ABCC9	O60706	1549 aa		47.32	■■■■■ 5.17
REPIN1-213	ENST00000488943	CCDC180	Q9P1Z9	1646 aa		46.68	■■■■■ 5.06
REPIN1-213	ENST00000488943	DNAJC5B	Q9UF47	199 aa		44.88	■■■■■ 4.78
REPIN1-213	ENST00000488943	RB1CC1	Q8TDY2	1594 aa		44.78	■■■■■ 4.76
REPIN1-213	ENST00000488943	NACAD	O15069	1562 aa		44.29	■■■■■ 4.68
REPIN1-213	ENST00000488943	DCAF8L2	P0C7V8	631 aa		44.02	■■■■■ 4.64
REPIN1-213	ENST00000488943	PABPN1	Q86U42	306 aa	Known RBP eCLIP	43.95	■■■■■ 4.63
REPIN1-213	ENST00000488943	UNC13A	Q9UPW8	1703 aa		43.73	■■■■■ 4.59
REPIN1-213	ENST00000488943	MYO15B	Q96JP2	1530 aa		43.42	■■■■■ 4.54
REPIN1-213	ENST00000488943	BICRA	Q9NZM4	1560 aa		43.41	■■■■■ 4.54
REPIN1-213	ENST00000488943	SHROOM4	Q9ULL8	1493 aa		42.82	■■■■■ 4.45
REPIN1-213	ENST00000488943	CC2D2A	Q9P2K1	1620 aa		42.71	■■■■■ 4.43
REPIN1-213	ENST00000488943	CECR2	Q9BXF3	1484 aa		42.7	■■■■■ 4.43
REPIN1-213	ENST00000488943	ZCCHC6	Q5VYS8	1495 aa	Known RBP	42.66	■■■■■ 4.42
REPIN1-213	ENST00000488943	DCAF1	Q9Y4B6	1507 aa		42.62	■■■■■ 4.41
REPIN1-213	ENST00000488943	SCRIB	Q14160	1630 aa		42.51	■■■■■ 4.4
REPIN1-213	ENST00000488943	EIF4G1	Q04637	1599 aa	Known RBP	42.45	■■■■■ 4.39
REPIN1-213	ENST00000488943	DNAJC5	Q9H3Z4	198 aa		41.76	■■■■■ 4.28
REPIN1-213	ENST00000488943	CUX2	O14529	1486 aa		41.07	■■■■■ 4.16
REPIN1-213	ENST00000488943	ERCC6	Q03468	1493 aa		40.97	■■■■■ 4.15
REPIN1-213	ENST00000488943	NCAPD3	P42695	1498 aa		40.86	■■■■■ 4.13
REPIN1-213	ENST00000488943	ATAD2B	Q9ULI0	1458 aa		40.64	■■■■■ 4.1
REPIN1-213	ENST00000488943	SMARCA2	P51531	1590 aa		40.54	■■■■■ 4.08
REPIN1-213	ENST00000488943	HMGXB3	Q12766	1538 aa		40.52	■■■■■ 4.08
REPIN1-213	ENST00000488943	SMARCA4	P51532	1647 aa		40.46	■■■■■ 4.07
REPIN1-213	ENST00000488943	NES	P48681	1621 aa		40.43	■■■■■ 4.06
REPIN1-213	ENST00000488943	BAZ1B	Q9UIG0	1483 aa	Known RBP	40.27	■■■■■ 4.04
REPIN1-213	ENST00000488943	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	40.18	■■■■■ 4.02
REPIN1-213	ENST00000488943	THOC2	Q8NI27	1593 aa	Known RBP	40.16	■■■■■ 4.02
REPIN1-213	ENST00000488943	LAMC3	Q9Y6N6	1575 aa		40.1	■■■■■ 4.01
REPIN1-213	ENST00000488943	PEG3	Q9GZU2	1588 aa		40.03	■■■■■ 4
REPIN1-213	ENST00000488943	KIF21A	Q7Z4S6	1674 aa		39.92	■■■■□ 3.98
REPIN1-213	ENST00000488943	PDS5B	Q9NTI5	1447 aa		39.91	■■■■□ 3.98
REPIN1-213	ENST00000488943	MROH2B	Q7Z745	1585 aa		39.78	■■■■□ 3.96
REPIN1-213	ENST00000488943	TRIM41	Q8WV44	630 aa		39.75	■■■■□ 3.95
REPIN1-213	ENST00000488943	CADPS	Q9ULU8	1353 aa		39.61	■■■■□ 3.93
REPIN1-213	ENST00000488943	MRC2	Q9UBG0	1479 aa		39.57	■■■■□ 3.93
REPIN1-213	ENST00000488943	WDR62	O43379	1518 aa		39.48	■■■■□ 3.91
REPIN1-213	ENST00000488943	WIZ	O95785	1651 aa		39.31	■■■■□ 3.88
REPIN1-213	ENST00000488943	CEP164	Q9UPV0	1460 aa		39.3	■■■■□ 3.88
REPIN1-213	ENST00000488943	FANCD2	Q9BXW9	1451 aa		39.17	■■■■□ 3.86
REPIN1-213	ENST00000488943	OSCAR	Q8IYS5	282 aa		39.11	■■■■□ 3.85
REPIN1-213	ENST00000488943	CFTR	P13569	1480 aa		39	■■■■□ 3.83
REPIN1-213	ENST00000488943	URB2	Q14146	1524 aa	Known RBP	38.86	■■■■□ 3.81
REPIN1-213	ENST00000488943	TOP2A	P11388	1531 aa	Known RBP	38.77	■■■■□ 3.8
REPIN1-213	ENST00000488943	RSF1	Q96T23	1441 aa	Predicted RBP	38.72	■■■■□ 3.79
REPIN1-213	ENST00000488943	RIMBP3C	A6NJZ7	1639 aa		38.65	■■■■□ 3.78
REPIN1-213	ENST00000488943	RIMBP3B	A6NNM3	1639 aa		38.65	■■■■□ 3.78
REPIN1-213	ENST00000488943	RIMBP3	Q9UFD9	1639 aa		38.65	■■■■□ 3.78
REPIN1-213	ENST00000488943	PRDM2	Q13029	1718 aa		38.62	■■■■□ 3.77
REPIN1-213	ENST00000488943	IFT140	Q96RY7	1462 aa		38.54	■■■■□ 3.76
REPIN1-213	ENST00000488943	ZNF608	Q9ULD9	1512 aa	Predicted RBP	38.48	■■■■□ 3.75
REPIN1-213	ENST00000488943	ARHGEF11	O15085	1522 aa		38.44	■■■■□ 3.74
REPIN1-213	ENST00000488943	TOPBP1	Q92547	1522 aa		38.34	■■■■□ 3.73
REPIN1-213	ENST00000488943	CCDC88B	A6NC98	1476 aa		38.32	■■■■□ 3.72
REPIN1-213	ENST00000488943	EIF4G3	O43432	1585 aa	Known RBP	38.28	■■■■□ 3.72
REPIN1-213	ENST00000488943	ABCC8	Q09428	1581 aa		38.27	■■■■□ 3.72
REPIN1-213	ENST00000488943	CYB5RL	Q6IPT4	315 aa		38.24	■■■■□ 3.71
REPIN1-213	ENST00000488943	DNMBP	Q6XZF7	1577 aa		38.17	■■■■□ 3.7
REPIN1-213	ENST00000488943	CHD1	O14646	1710 aa		38.14	■■■■□ 3.7
REPIN1-213	ENST00000488943	TRH	P20396	242 aa	Predicted RBP	38.1	■■■■□ 3.69
REPIN1-213	ENST00000488943	AQR	O60306	1485 aa	Known RBP eCLIP	38.08	■■■■□ 3.69	2e-10	■■■■■ 52.5
REPIN1-213	ENST00000488943	FBLN2	P98095	1184 aa		38.06	■■■■□ 3.68
REPIN1-213	ENST00000488943	TARBP1	Q13395	1621 aa	Known RBP	38.03	■■■■□ 3.68
REPIN1-213	ENST00000488943	ARAP1	Q96P48	1450 aa		38	■■■■□ 3.67
REPIN1-213	ENST00000488943	POLA1	P09884	1462 aa	Predicted RBP	37.9	■■■■□ 3.66
REPIN1-213	ENST00000488943	RAD54L2	Q9Y4B4	1467 aa		37.78	■■■■□ 3.64
REPIN1-213	ENST00000488943	TDRD9	Q8NDG6	1382 aa	Known RBP	37.75	■■■■□ 3.63
REPIN1-213	ENST00000488943	SOGA1	O94964	1423 aa		37.75	■■■■□ 3.63
REPIN1-213	ENST00000488943	SNAPC4	Q5SXM2	1469 aa		37.69	■■■■□ 3.62
REPIN1-213	ENST00000488943	WDR97	A6NE52	1622 aa		37.65	■■■■□ 3.62
REPIN1-213	ENST00000488943	CHMP7	Q8WUX9	453 aa	Predicted RBP	37.65	■■■■□ 3.62
REPIN1-213	ENST00000488943	CLASP1	Q7Z460	1538 aa		37.64	■■■■□ 3.62
REPIN1-213	ENST00000488943	SYNJ1	O43426	1573 aa		37.63	■■■■□ 3.62
REPIN1-213	ENST00000488943	FGD5	Q6ZNL6	1462 aa		37.59	■■■■□ 3.61
REPIN1-213	ENST00000488943	MAGI1	Q96QZ7	1491 aa	Predicted RBP	37.57	■■■■□ 3.6
REPIN1-213	ENST00000488943	AEBP2	Q6ZN18	517 aa	Predicted RBP	37.51	■■■■□ 3.6
REPIN1-213	ENST00000488943	GRIN2B	Q13224	1484 aa		37.5	■■■■□ 3.59
REPIN1-213	ENST00000488943	SYNJ2	O15056	1496 aa		37.45	■■■■□ 3.59
REPIN1-213	ENST00000488943	CUX1	P39880	1505 aa		37.42	■■■■□ 3.58
REPIN1-213	ENST00000488943	PBRM1	Q86U86	1689 aa		37.33	■■■■□ 3.57
REPIN1-213	ENST00000488943	GAPVD1	Q14C86	1478 aa		37.32	■■■■□ 3.56
REPIN1-213	ENST00000488943	ABCA10	Q8WWZ4	1543 aa		37.11	■■■■□ 3.53
REPIN1-213	ENST00000488943	ABCA5	Q8WWZ7	1642 aa		37.11	■■■■□ 3.53
REPIN1-213	ENST00000488943	GRIN2A	Q12879	1464 aa		37.01	■■■■□ 3.51
REPIN1-213	ENST00000488943	ERCC6L2	Q5T890	1561 aa		36.99	■■■■□ 3.51
REPIN1-213	ENST00000488943	CEP170	Q5SW79	1584 aa		36.92	■■■■□ 3.5
REPIN1-213	ENST00000488943	ADAMTS12	P58397	1594 aa		36.91	■■■■□ 3.5
REPIN1-213	ENST00000488943	NUP160	Q12769	1436 aa		36.88	■■■■□ 3.49
REPIN1-213	ENST00000488943	WRN	Q14191	1432 aa	Predicted RBP eCLIP	36.87	■■■■□ 3.49	7e-10	■■■■■ 33.4
REPIN1-213	ENST00000488943	SHROOM2	Q13796	1616 aa		36.8	■■■■□ 3.48
REPIN1-213	ENST00000488943	FHAD1	B1AJZ9	1412 aa		36.78	■■■■□ 3.48
REPIN1-213	ENST00000488943	KIF13A	Q9H1H9	1805 aa		36.69	■■■■□ 3.46
REPIN1-213	ENST00000488943	BIVM-ERCC5	R4GMW8	1640 aa		36.68	■■■■□ 3.46
REPIN1-213	ENST00000488943	TOP2B	Q02880	1626 aa		36.67	■■■■□ 3.46
REPIN1-213	ENST00000488943	ERICH3	Q5RHP9	1530 aa		36.65	■■■■□ 3.46
REPIN1-213	ENST00000488943	PRG4	Q92954	1404 aa	Predicted RBP	36.62	■■■■□ 3.45
REPIN1-213	ENST00000488943	SUPT5H	O00267	1087 aa	Known RBP	36.61	■■■■□ 3.45
REPIN1-213	ENST00000488943	JPH4	Q96JJ6	628 aa		36.54	■■■■□ 3.44

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms