RNA–Protein interactions for RNA: ENST00000540700.1

UBC-208, Transcript of ubiquitin C, humanhuman

TSL 2

Gene UBC, Length 627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBC-208ENST00000540700 NISCHQ9Y2I1 1504 aa39.93■■■■□ 3.98
UBC-208ENST00000540700 ABCC9O60706 1549 aa36.54■■■■□ 3.44
UBC-208ENST00000540700 CCDC180Q9P1Z9 1646 aa35.8■■■■□ 3.32
UBC-208ENST00000540700 DNAJC5BQ9UF47 199 aa34.77■■■■□ 3.16
UBC-208ENST00000540700 RB1CC1Q8TDY2 1594 aa34.42■■■■□ 3.1
UBC-208ENST00000540700 DCAF8L2P0C7V8 631 aa34.06■■■■□ 3.04
UBC-208ENST00000540700 NACADO15069 1562 aa34.04■■■■□ 3.04
UBC-208ENST00000540700 PABPN1Q86U42 306 aaKnown RBP eCLIP34.02■■■■□ 3.04
UBC-208ENST00000540700 UNC13AQ9UPW8 1703 aa33.56■■■□□ 2.96
UBC-208ENST00000540700 BICRAQ9NZM4 1560 aa33.44■■■□□ 2.94
UBC-208ENST00000540700 ZCCHC6Q5VYS8 1495 aaKnown RBP33.38■■■□□ 2.93
UBC-208ENST00000540700 MYO15BQ96JP2 1530 aa33.35■■■□□ 2.93
UBC-208ENST00000540700 DCAF1Q9Y4B6 1507 aa33.01■■■□□ 2.87
UBC-208ENST00000540700 CECR2Q9BXF3 1484 aa32.93■■■□□ 2.86
UBC-208ENST00000540700 CC2D2AQ9P2K1 1620 aa32.88■■■□□ 2.85
UBC-208ENST00000540700 SHROOM4Q9ULL8 1493 aa32.86■■■□□ 2.85
UBC-208ENST00000540700 SCRIBQ14160 1630 aa32.77■■■□□ 2.84
UBC-208ENST00000540700 EIF4G1Q04637 1599 aaKnown RBP32.69■■■□□ 2.82
UBC-208ENST00000540700 DNAJC5Q9H3Z4 198 aa32.25■■■□□ 2.75
UBC-208ENST00000540700 CUX2O14529 1486 aa31.59■■■□□ 2.65
UBC-208ENST00000540700 ERCC6Q03468 1493 aa31.58■■■□□ 2.65
UBC-208ENST00000540700 NCAPD3P42695 1498 aa31.47■■■□□ 2.63
UBC-208ENST00000540700 ATAD2BQ9ULI0 1458 aa31.34■■■□□ 2.61
UBC-208ENST00000540700 NESP48681 1621 aa31.23■■■□□ 2.59
UBC-208ENST00000540700 SMARCA2P51531 1590 aa31.17■■■□□ 2.58
UBC-208ENST00000540700 HMGXB3Q12766 1538 aa31.14■■■□□ 2.58
UBC-208ENST00000540700 SMARCA4P51532 1647 aa31.13■■■□□ 2.57
UBC-208ENST00000540700 BAZ1BQ9UIG0 1483 aaKnown RBP31.02■■■□□ 2.56
UBC-208ENST00000540700 BAZ1AQ9NRL2 1556 aaPredicted RBP30.91■■■□□ 2.54
UBC-208ENST00000540700 THOC2Q8NI27 1593 aaKnown RBP30.9■■■□□ 2.54
UBC-208ENST00000540700 MROH2BQ7Z745 1585 aa30.83■■■□□ 2.53
UBC-208ENST00000540700 LAMC3Q9Y6N6 1575 aa30.8■■■□□ 2.52
UBC-208ENST00000540700 PEG3Q9GZU2 1588 aa30.77■■■□□ 2.52
UBC-208ENST00000540700 TRIM41Q8WV44 630 aa30.75■■■□□ 2.51
UBC-208ENST00000540700 PDS5BQ9NTI5 1447 aa30.73■■■□□ 2.51
UBC-208ENST00000540700 KIF21AQ7Z4S6 1674 aa30.69■■■□□ 2.5
UBC-208ENST00000540700 RSF1Q96T23 1441 aaPredicted RBP30.62■■■□□ 2.49
UBC-208ENST00000540700 CADPSQ9ULU8 1353 aa30.54■■■□□ 2.48
UBC-208ENST00000540700 WIZO95785 1651 aa30.5■■■□□ 2.47
UBC-208ENST00000540700 MRC2Q9UBG0 1479 aa30.49■■■□□ 2.47
UBC-208ENST00000540700 WDR62O43379 1518 aa30.38■■■□□ 2.45
UBC-208ENST00000540700 CEP164Q9UPV0 1460 aa30.26■■■□□ 2.44
UBC-208ENST00000540700 FANCD2Q9BXW9 1451 aa30.2■■■□□ 2.43
UBC-208ENST00000540700 OSCARQ8IYS5 282 aa30.18■■■□□ 2.42
UBC-208ENST00000540700 TOP2AP11388 1531 aaKnown RBP30.17■■■□□ 2.42
UBC-208ENST00000540700 SUPT5HO00267 1087 aaKnown RBP30.13■■■□□ 2.41
UBC-208ENST00000540700 CFTRP13569 1480 aa30.05■■■□□ 2.4
UBC-208ENST00000540700 URB2Q14146 1524 aaKnown RBP29.97■■■□□ 2.39
UBC-208ENST00000540700 CCDC88BA6NC98 1476 aa29.85■■■□□ 2.37
UBC-208ENST00000540700 RIMBP3CA6NJZ7 1639 aa29.74■■■□□ 2.35
UBC-208ENST00000540700 RIMBP3BA6NNM3 1639 aa29.74■■■□□ 2.35
UBC-208ENST00000540700 RIMBP3Q9UFD9 1639 aa29.74■■■□□ 2.35
UBC-208ENST00000540700 ZNF608Q9ULD9 1512 aaPredicted RBP29.73■■■□□ 2.35
UBC-208ENST00000540700 IFT140Q96RY7 1462 aa29.68■■■□□ 2.34
UBC-208ENST00000540700 ARHGEF11O15085 1522 aa29.63■■■□□ 2.33
UBC-208ENST00000540700 CYB5RLQ6IPT4 315 aa29.56■■■□□ 2.32
UBC-208ENST00000540700 TOPBP1Q92547 1522 aa29.55■■■□□ 2.32
UBC-208ENST00000540700 PRDM2Q13029 1718 aa29.54■■■□□ 2.32
UBC-208ENST00000540700 EIF4G3O43432 1585 aaKnown RBP29.45■■■□□ 2.31
UBC-208ENST00000540700 TRHP20396 242 aaPredicted RBP29.43■■■□□ 2.3
UBC-208ENST00000540700 FBLN2P98095 1184 aa29.42■■■□□ 2.3
UBC-208ENST00000540700 AQRO60306 1485 aaKnown RBP eCLIP29.42■■■□□ 2.32e-11■■■■■ 51
UBC-208ENST00000540700 ABCC8Q09428 1581 aa29.4■■■□□ 2.3
UBC-208ENST00000540700 DNMBPQ6XZF7 1577 aa29.36■■■□□ 2.29
UBC-208ENST00000540700 ARAP1Q96P48 1450 aa29.32■■■□□ 2.28
UBC-208ENST00000540700 CHD1O14646 1710 aa29.31■■■□□ 2.28
UBC-208ENST00000540700 TARBP1Q13395 1621 aaKnown RBP29.27■■■□□ 2.28
UBC-208ENST00000540700 POLA1P09884 1462 aaPredicted RBP29.23■■■□□ 2.27
UBC-208ENST00000540700 RAD54L2Q9Y4B4 1467 aa29.19■■■□□ 2.26
UBC-208ENST00000540700 TDRD9Q8NDG6 1382 aaKnown RBP29.18■■■□□ 2.26
UBC-208ENST00000540700 SOGA1O94964 1423 aa29.12■■■□□ 2.25
UBC-208ENST00000540700 SNAPC4Q5SXM2 1469 aa29.07■■■□□ 2.24
UBC-208ENST00000540700 CHMP7Q8WUX9 453 aaPredicted RBP29.06■■■□□ 2.24
UBC-208ENST00000540700 FGD5Q6ZNL6 1462 aa28.98■■■□□ 2.23
UBC-208ENST00000540700 CLASP1Q7Z460 1538 aa28.98■■■□□ 2.23
UBC-208ENST00000540700 AEBP2Q6ZN18 517 aaPredicted RBP28.94■■■□□ 2.22
UBC-208ENST00000540700 SYNJ1O43426 1573 aa28.92■■■□□ 2.22
UBC-208ENST00000540700 MAGI1Q96QZ7 1491 aaPredicted RBP28.91■■■□□ 2.22
UBC-208ENST00000540700 CUX1P39880 1505 aa28.89■■■□□ 2.22
UBC-208ENST00000540700 GRIN2BQ13224 1484 aa28.89■■■□□ 2.22
UBC-208ENST00000540700 WDR97A6NE52 1622 aa28.87■■■□□ 2.21
UBC-208ENST00000540700 SYNJ2O15056 1496 aa28.85■■■□□ 2.21
UBC-208ENST00000540700 WRNQ14191 1432 aaPredicted RBP eCLIP28.79■■■□□ 2.29e-6■■■■■ 50.1
UBC-208ENST00000540700 GAPVD1Q14C86 1478 aa28.78■■■□□ 2.2
UBC-208ENST00000540700 BIVM-ERCC5R4GMW8 1640 aa28.7■■■□□ 2.19
UBC-208ENST00000540700 TOP2BQ02880 1626 aa28.69■■■□□ 2.18
UBC-208ENST00000540700 PBRM1Q86U86 1689 aa28.65■■■□□ 2.18
UBC-208ENST00000540700 ABCA10Q8WWZ4 1543 aa28.59■■■□□ 2.17
UBC-208ENST00000540700 ERCC6L2Q5T890 1561 aa28.56■■■□□ 2.16
UBC-208ENST00000540700 ABCA5Q8WWZ7 1642 aa28.54■■■□□ 2.16
UBC-208ENST00000540700 GRIN2AQ12879 1464 aa28.52■■■□□ 2.16
UBC-208ENST00000540700 CEP170Q5SW79 1584 aa28.44■■■□□ 2.14
UBC-208ENST00000540700 NUP160Q12769 1436 aa28.43■■■□□ 2.14
UBC-208ENST00000540700 CHIC1Q5VXU3 224 aa28.42■■■□□ 2.14
UBC-208ENST00000540700 ADAMTS12P58397 1594 aa28.4■■■□□ 2.14
UBC-208ENST00000540700 FHAD1B1AJZ9 1412 aa28.35■■■□□ 2.13
UBC-208ENST00000540700 SHROOM2Q13796 1616 aa28.29■■■□□ 2.12
UBC-208ENST00000540700 PRG4Q92954 1404 aaPredicted RBP28.26■■■□□ 2.12
UBC-208ENST00000540700 JPH4Q96JJ6 628 aa28.22■■■□□ 2.11
UBC-208ENST00000540700 ERICH3Q5RHP9 1530 aa28.19■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms