RNA–Protein interactions for RNA: ENST00000593026.1

DDX39A-221, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 657 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-221ENST00000593026 NISCHQ9Y2I1 1504 aa35.84■■■■□ 3.33
DDX39A-221ENST00000593026 CCDC180Q9P1Z9 1646 aa31.78■■■□□ 2.68
DDX39A-221ENST00000593026 ABCC9O60706 1549 aa30.87■■■□□ 2.53
DDX39A-221ENST00000593026 ZCCHC6Q5VYS8 1495 aaKnown RBP29.92■■■□□ 2.38
DDX39A-221ENST00000593026 DCAF8L2P0C7V8 631 aa29.85■■■□□ 2.37
DDX39A-221ENST00000593026 NACADO15069 1562 aa29.81■■■□□ 2.36
DDX39A-221ENST00000593026 RB1CC1Q8TDY2 1594 aa29.8■■■□□ 2.36
DDX39A-221ENST00000593026 MYO15BQ96JP2 1530 aa29.71■■■□□ 2.35
DDX39A-221ENST00000593026 DCAF1Q9Y4B6 1507 aa29.66■■■□□ 2.34
DDX39A-221ENST00000593026 UNC13AQ9UPW8 1703 aa29.12■■■□□ 2.25
DDX39A-221ENST00000593026 SCRIBQ14160 1630 aa29.03■■■□□ 2.24
DDX39A-221ENST00000593026 BICRAQ9NZM4 1560 aa28.87■■■□□ 2.21
DDX39A-221ENST00000593026 PABPN1Q86U42 306 aaKnown RBP eCLIP28.86■■■□□ 2.21
DDX39A-221ENST00000593026 SHROOM4Q9ULL8 1493 aa28.6■■■□□ 2.17
DDX39A-221ENST00000593026 DNAJC5BQ9UF47 199 aa28.32■■■□□ 2.12
DDX39A-221ENST00000593026 EIF4G1Q04637 1599 aaKnown RBP28.1■■■□□ 2.09
DDX39A-221ENST00000593026 CC2D2AQ9P2K1 1620 aa27.92■■■□□ 2.06
DDX39A-221ENST00000593026 CECR2Q9BXF3 1484 aa27.89■■■□□ 2.05
DDX39A-221ENST00000593026 BAZ1AQ9NRL2 1556 aaPredicted RBP27.78■■■□□ 2.04
DDX39A-221ENST00000593026 SMARCA4P51532 1647 aa27.78■■■□□ 2.04
DDX39A-221ENST00000593026 MROH2BQ7Z745 1585 aa27.62■■■□□ 2.01
DDX39A-221ENST00000593026 ATAD2BQ9ULI0 1458 aa27.55■■■□□ 2
DDX39A-221ENST00000593026 SMARCA2P51531 1590 aa27.54■■■□□ 2
DDX39A-221ENST00000593026 PEG3Q9GZU2 1588 aa27.49■■□□□ 1.99
DDX39A-221ENST00000593026 NCAPD3P42695 1498 aa27.49■■□□□ 1.99
DDX39A-221ENST00000593026 HMGXB3Q12766 1538 aa27.4■■□□□ 1.98
DDX39A-221ENST00000593026 RSF1Q96T23 1441 aaPredicted RBP27.39■■□□□ 1.97
DDX39A-221ENST00000593026 BAZ1BQ9UIG0 1483 aaKnown RBP27.36■■□□□ 1.97
DDX39A-221ENST00000593026 WIZO95785 1651 aa27.35■■□□□ 1.97
DDX39A-221ENST00000593026 TOP2AP11388 1531 aaKnown RBP27.08■■□□□ 1.93
DDX39A-221ENST00000593026 SUPT5HO00267 1087 aaKnown RBP26.88■■□□□ 1.89
DDX39A-221ENST00000593026 NESP48681 1621 aa26.77■■□□□ 1.88
DDX39A-221ENST00000593026 LAMC3Q9Y6N6 1575 aa26.75■■□□□ 1.87
DDX39A-221ENST00000593026 CCDC88BA6NC98 1476 aa26.74■■□□□ 1.87
DDX39A-221ENST00000593026 CADPSQ9ULU8 1353 aa26.71■■□□□ 1.87
DDX39A-221ENST00000593026 ERCC6Q03468 1493 aa26.61■■□□□ 1.85
DDX39A-221ENST00000593026 CFTRP13569 1480 aa26.6■■□□□ 1.85
DDX39A-221ENST00000593026 PDS5BQ9NTI5 1447 aa26.56■■□□□ 1.84
DDX39A-221ENST00000593026 KIF21AQ7Z4S6 1674 aa26.47■■□□□ 1.83
DDX39A-221ENST00000593026 PRDM2Q13029 1718 aa26.45■■□□□ 1.82
DDX39A-221ENST00000593026 FANCD2Q9BXW9 1451 aa26.42■■□□□ 1.82
DDX39A-221ENST00000593026 CEP164Q9UPV0 1460 aa26.37■■□□□ 1.81
DDX39A-221ENST00000593026 THOC2Q8NI27 1593 aaKnown RBP26.33■■□□□ 1.8
DDX39A-221ENST00000593026 CUX2O14529 1486 aa26.3■■□□□ 1.8
DDX39A-221ENST00000593026 MRC2Q9UBG0 1479 aa26.28■■□□□ 1.8
DDX39A-221ENST00000593026 WDR62O43379 1518 aa26.18■■□□□ 1.78
DDX39A-221ENST00000593026 URB2Q14146 1524 aaKnown RBP26.14■■□□□ 1.77
DDX39A-221ENST00000593026 ABCC8Q09428 1581 aa26.03■■□□□ 1.76
DDX39A-221ENST00000593026 TOPBP1Q92547 1522 aa26.02■■□□□ 1.76
DDX39A-221ENST00000593026 DNMBPQ6XZF7 1577 aa26.02■■□□□ 1.76
DDX39A-221ENST00000593026 CUX1P39880 1505 aa25.9■■□□□ 1.74
DDX39A-221ENST00000593026 WRNQ14191 1432 aaPredicted RBP eCLIP25.84■■□□□ 1.732e-9■■■■■ 39.4
DDX39A-221ENST00000593026 DNAJC5Q9H3Z4 198 aa25.83■■□□□ 1.73
DDX39A-221ENST00000593026 POLA1P09884 1462 aaPredicted RBP25.81■■□□□ 1.72
DDX39A-221ENST00000593026 IFT140Q96RY7 1462 aa25.8■■□□□ 1.72
DDX39A-221ENST00000593026 FGD5Q6ZNL6 1462 aa25.79■■□□□ 1.72
DDX39A-221ENST00000593026 SYNJ1O43426 1573 aa25.77■■□□□ 1.72
DDX39A-221ENST00000593026 TOP2BQ02880 1626 aa25.76■■□□□ 1.71
DDX39A-221ENST00000593026 BIVM-ERCC5R4GMW8 1640 aa25.76■■□□□ 1.71
DDX39A-221ENST00000593026 TARBP1Q13395 1621 aaKnown RBP25.71■■□□□ 1.71
DDX39A-221ENST00000593026 SOGA1O94964 1423 aa25.71■■□□□ 1.71
DDX39A-221ENST00000593026 RAD54L2Q9Y4B4 1467 aa25.69■■□□□ 1.7
DDX39A-221ENST00000593026 ZNF608Q9ULD9 1512 aaPredicted RBP25.65■■□□□ 1.7
DDX39A-221ENST00000593026 EIF4G3O43432 1585 aaKnown RBP25.59■■□□□ 1.69
DDX39A-221ENST00000593026 WDR97A6NE52 1622 aa25.57■■□□□ 1.68
DDX39A-221ENST00000593026 ABCA10Q8WWZ4 1543 aa25.55■■□□□ 1.68
DDX39A-221ENST00000593026 TDRD9Q8NDG6 1382 aaKnown RBP25.54■■□□□ 1.68
DDX39A-221ENST00000593026 AQRO60306 1485 aaKnown RBP eCLIP25.53■■□□□ 1.682e-8■■■■□ 26.2
DDX39A-221ENST00000593026 ABCA5Q8WWZ7 1642 aa25.44■■□□□ 1.66
DDX39A-221ENST00000593026 GAPVD1Q14C86 1478 aa25.41■■□□□ 1.66
DDX39A-221ENST00000593026 GRIN2BQ13224 1484 aa25.39■■□□□ 1.65
DDX39A-221ENST00000593026 TRIM41Q8WV44 630 aa25.38■■□□□ 1.65
DDX39A-221ENST00000593026 PBRM1Q86U86 1689 aa25.37■■□□□ 1.65
DDX39A-221ENST00000593026 SNAPC4Q5SXM2 1469 aa25.33■■□□□ 1.65
DDX39A-221ENST00000593026 MAGI1Q96QZ7 1491 aaPredicted RBP25.3■■□□□ 1.64
DDX39A-221ENST00000593026 KIF27Q86VH2 1401 aa25.28■■□□□ 1.64
DDX39A-221ENST00000593026 ERICH3Q5RHP9 1530 aa25.25■■□□□ 1.63
DDX39A-221ENST00000593026 CHD1O14646 1710 aa25.22■■□□□ 1.63
DDX39A-221ENST00000593026 CHIC1Q5VXU3 224 aa25.21■■□□□ 1.63
DDX39A-221ENST00000593026 OSCARQ8IYS5 282 aa25.21■■□□□ 1.63
DDX39A-221ENST00000593026 SYNJ2O15056 1496 aa25.2■■□□□ 1.62
DDX39A-221ENST00000593026 FBLN2P98095 1184 aa25.19■■□□□ 1.62
DDX39A-221ENST00000593026 ADAMTS12P58397 1594 aa25.18■■□□□ 1.62
DDX39A-221ENST00000593026 CHMP7Q8WUX9 453 aaPredicted RBP25.16■■□□□ 1.62
DDX39A-221ENST00000593026 FHAD1B1AJZ9 1412 aa25.14■■□□□ 1.62
DDX39A-221ENST00000593026 IGF1RP08069 1367 aa25.12■■□□□ 1.61
DDX39A-221ENST00000593026 RUSC2Q8N2Y8 1516 aa25.1■■□□□ 1.61
DDX39A-221ENST00000593026 CUL7Q14999 1698 aa25.09■■□□□ 1.61
DDX39A-221ENST00000593026 GRIN2AQ12879 1464 aa25.06■■□□□ 1.6
DDX39A-221ENST00000593026 CARMIL1Q5VZK9 1371 aa24.99■■□□□ 1.59
DDX39A-221ENST00000593026 EEA1Q15075 1411 aa24.96■■□□□ 1.59
DDX39A-221ENST00000593026 CLASP1Q7Z460 1538 aa24.94■■□□□ 1.58
DDX39A-221ENST00000593026 CEP170Q5SW79 1584 aa24.93■■□□□ 1.58
DDX39A-221ENST00000593026 NUP160Q12769 1436 aa24.93■■□□□ 1.58
DDX39A-221ENST00000593026 RAPGEF2Q9Y4G8 1499 aa24.88■■□□□ 1.57
DDX39A-221ENST00000593026 CSRNP3Q8WYN3 585 aa24.87■■□□□ 1.57
DDX39A-221ENST00000593026 FAM9AQ8IZU1 332 aaPredicted RBP24.85■■□□□ 1.57
DDX39A-221ENST00000593026 PRXQ9BXM0 1461 aa24.83■■□□□ 1.57
DDX39A-221ENST00000593026 ARHGEF11O15085 1522 aa24.76■■□□□ 1.55
DDX39A-221ENST00000593026 KIAA0586Q9BVV6 1533 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms