Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC17.52■□□□□ 0.395e-6■□□□□ 11.2
U2AF1Q01081 ENO1-202ENST00000464920 2266 ntTSL 1 (best)17.34■□□□□ 0.375e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-215ENST00000472559 1921 ntTSL 1 (best)17.1■□□□□ 0.335e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-210ENST00000424405 758 ntTSL 517.07■□□□□ 0.325e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-214ENST00000457259 1987 ntTSL 1 (best)16.47■□□□□ 0.235e-6■□□□□ 11.2
U2AF1Q01081 ENO1-206ENST00000497492 647 ntTSL 216.45■□□□□ 0.225e-6■□□□□ 11.2
U2AF1Q01081 ENO1-201ENST00000234590 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.215e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-209ENST00000397556 1284 ntTSL 1 (best) BASIC16.35■□□□□ 0.215e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-206ENST00000374394 2329 ntTSL 216.12■□□□□ 0.175e-6■□□□□ 11.2
U2AF1Q01081 STAG3L4-203ENST00000472361 1039 ntTSL 515.43■□□□□ 0.065e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-203ENST00000374380 2133 ntTSL 2 BASIC15.24■□□□□ 0.035e-6■□□□□ 11.2
U2AF1Q01081 CUX1-202ENST00000292538 2930 ntTSL 1 (best) BASIC15.12■□□□□ 0.015e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-201ENST00000349714 2188 ntTSL 5 BASIC15.07■□□□□ 05e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-202ENST00000359226 2036 ntTSL 4 BASIC14.99□□□□□ -0.015e-6■□□□□ 11.2
U2AF1Q01081 STAG3L4-202ENST00000416602 2143 ntTSL 2 BASIC14.6□□□□□ -0.075e-6■□□□□ 11.2
U2AF1Q01081 CUX1-212ENST00000547394 2878 ntTSL 2 BASIC14.59□□□□□ -0.075e-6■□□□□ 11.2
U2AF1Q01081 CUX1-218ENST00000560541 3176 ntTSL 514.45□□□□□ -0.15e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-221ENST00000496812 801 ntTSL 314.44□□□□□ -0.15e-6■□□□□ 11.2
U2AF1Q01081 CUX1-204ENST00000393824 2331 ntTSL 2 BASIC14.06□□□□□ -0.165e-6■□□□□ 11.2
U2AF1Q01081 CUX1-221ENST00000622516 2990 ntTSL 1 (best) BASIC13.93□□□□□ -0.185e-6■□□□□ 11.2
U2AF1Q01081 CUX1-217ENST00000558836 2965 ntTSL 513.93□□□□□ -0.185e-6■□□□□ 11.2
U2AF1Q01081 CUX1-205ENST00000425244 2776 ntTSL 2 BASIC13.77□□□□□ -0.215e-6■□□□□ 11.2
U2AF1Q01081 UQCC1-205ENST00000374385 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.245e-6■□□□□ 11.2
U2AF1Q01081 CUX1-206ENST00000437600 3031 ntTSL 1 (best) BASIC12.35□□□□□ -0.435e-6■□□□□ 11.2
U2AF1Q01081 CUX1-203ENST00000360264 13762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.485e-6■□□□□ 11.2
U2AF1Q01081 CUX1-201ENST00000292535 13747 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.555e-6■□□□□ 11.2
U2AF1Q01081 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC9.13□□□□□ -0.955e-6■□□□□ 11.2
U2AF1Q01081 STAG3L4-201ENST00000352103 530 ntBASIC8.32□□□□□ -1.085e-6■□□□□ 11.2
U2AF1Q01081 ENO1-203ENST00000486051 536 ntTSL 38.12□□□□□ -1.115e-6■□□□□ 11.2
U2AF1Q01081 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.715e-6■□□□□ 11.2
U2AF1Q01081 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC24.49■■□□□ 1.519e-11■□□□□ 11.2
U2AF1Q01081 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.369e-11■□□□□ 11.2
U2AF1Q01081 SLC3A2-214ENST00000539507 534 ntTSL 38.9□□□□□ -0.982e-30■□□□□ 11.2
U2AF1Q01081 GDF15-203ENST00000595973 890 ntTSL 525.27■■□□□ 1.646e-13■□□□□ 11.1
U2AF1Q01081 GDF15-204ENST00000597765 562 ntTSL 418.81■□□□□ 0.66e-13■□□□□ 11.1
U2AF1Q01081 ANKRD17-208ENST00000559367 539 ntTSL 59.73□□□□□ -0.856e-13■□□□□ 11.1
U2AF1Q01081 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.142e-6■□□□□ 11.1
U2AF1Q01081 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.552e-6■□□□□ 11.1
U2AF1Q01081 ZNF638-225ENST00000494241 703 ntTSL 35.18□□□□□ -1.582e-6■□□□□ 11.1
U2AF1Q01081 ZNF638-219ENST00000487638 4233 ntTSL 1 (best)2.3□□□□□ -2.042e-6■□□□□ 11.1
U2AF1Q01081 ZNF638-202ENST00000409407 4470 ntTSL 22.24□□□□□ -2.052e-6■□□□□ 11.1
U2AF1Q01081 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.659e-7■□□□□ 11.1
U2AF1Q01081 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.92□□□□□ -1.789e-7■□□□□ 11.1
U2AF1Q01081 HNRNPH1-245ENST00000523137 1563 ntTSL 425.1■■□□□ 1.616e-9■□□□□ 11.1
U2AF1Q01081 HNRNPH1-213ENST00000505811 1155 ntTSL 520.13■□□□□ 0.816e-9■□□□□ 11.1
U2AF1Q01081 HNRNPH1-215ENST00000508103 610 ntTSL 218.11■□□□□ 0.496e-9■□□□□ 11.1
U2AF1Q01081 HNRNPH1-217ENST00000510431 620 ntTSL 217.91■□□□□ 0.466e-9■□□□□ 11.1
U2AF1Q01081 HNRNPH1-214ENST00000506721 602 ntTSL 517.65■□□□□ 0.426e-9■□□□□ 11.1
U2AF1Q01081 HNRNPH1-232ENST00000519056 530 ntTSL 416.02■□□□□ 0.166e-9■□□□□ 11.1
U2AF1Q01081 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.224e-6■□□□□ 11.1
U2AF1Q01081 SMG5-204ENST00000476954 1161 ntTSL 220.4■□□□□ 0.864e-6■□□□□ 11.1
U2AF1Q01081 GGA2-203ENST00000562944 388 ntTSL 531.33■■■□□ 2.614e-8■□□□□ 11.1
U2AF1Q01081 UBE2D3-214ENST00000503282 584 ntTSL 229.4■■■□□ 2.32e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-229ENST00000510129 582 ntTSL 328.5■■■□□ 2.152e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC28.48■■■□□ 2.152e-12■□□□□ 11.1
U2AF1Q01081 GGA2-204ENST00000563047 366 ntTSL 528.33■■■□□ 2.134e-8■□□□□ 11.1
U2AF1Q01081 UBE2D3-216ENST00000503742 1977 ntTSL 1 (best)28.06■■■□□ 2.082e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-220ENST00000505307 743 ntTSL 526.69■■□□□ 1.862e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-215ENST00000503418 662 ntTSL 426.03■■□□□ 1.762e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-213ENST00000502690 599 ntTSL 422.83■■□□□ 1.252e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.782e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-228ENST00000508974 568 ntTSL 419.84■□□□□ 0.772e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.42e-12■□□□□ 11.1
U2AF1Q01081 GGA2-202ENST00000562117 387 ntTSL 517.54■□□□□ 0.44e-8■□□□□ 11.1
U2AF1Q01081 UBE2D3-209ENST00000394804 4166 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.022e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-232ENST00000514755 593 ntTSL 414.76□□□□□ -0.052e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-206ENST00000357194 660 ntTSL 2 BASIC13.65□□□□□ -0.222e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-227ENST00000508818 584 ntTSL 213.49□□□□□ -0.252e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-208ENST00000394803 2227 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.372e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-202ENST00000338145 896 ntAPPRIS ALT1 TSL 5 BASIC12.21□□□□□ -0.452e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-223ENST00000508249 604 ntTSL 412.16□□□□□ -0.462e-12■□□□□ 11.1
U2AF1Q01081 UBE2D3-222ENST00000508238 547 ntTSL 410.62□□□□□ -0.712e-12■□□□□ 11.1
U2AF1Q01081 GGA2-207ENST00000566651 332 ntTSL 310.51□□□□□ -0.734e-8■□□□□ 11.1
U2AF1Q01081 UBE2D3-204ENST00000349311 838 ntAPPRIS ALT1 TSL 2 BASIC8.94□□□□□ -0.982e-12■□□□□ 11.1
U2AF1Q01081 ZFR-204ENST00000505366 1159 ntTSL 1 (best)21■□□□□ 0.954e-9■□□□□ 11.1
U2AF1Q01081 ARFGAP1-211ENST00000519531 1490 ntTSL 324.13■■□□□ 1.452e-8■□□□□ 11.1
U2AF1Q01081 SRRM2-210ENST00000572721 841 ntTSL 218.8■□□□□ 0.62e-8■□□□□ 11.1
U2AF1Q01081 SRRM2-211ENST00000572883 887 ntTSL 214.32□□□□□ -0.122e-8■□□□□ 11.1
U2AF1Q01081 GK-212ENST00000488296 633 ntTSL 57.05□□□□□ -1.282e-10■□□□□ 11.1
U2AF1Q01081 MKLN1-207ENST00000468830 563 ntTSL 27.75□□□□□ -1.176e-7■□□□□ 11.1
U2AF1Q01081 ABCB6-205ENST00000448398 882 ntTSL 524.23■■□□□ 1.473e-6■□□□□ 11.1
U2AF1Q01081 ABCB6-203ENST00000417678 793 ntTSL 522.96■■□□□ 1.273e-6■□□□□ 11.1
U2AF1Q01081 ATG9A-215ENST00000446716 5245 ntTSL 222.95■■□□□ 1.263e-6■□□□□ 11.1
U2AF1Q01081 ABCB6-202ENST00000295750 2238 ntTSL 522.19■■□□□ 1.143e-6■□□□□ 11.1
U2AF1Q01081 KHSRP-207ENST00000595548 801 ntTSL 221.36■■□□□ 1.013e-6■□□□□ 11.1
U2AF1Q01081 KHSRP-206ENST00000595258 672 ntTSL 521.18■□□□□ 0.983e-6■□□□□ 11.1
U2AF1Q01081 ABCB6-210ENST00000492953 570 ntTSL 421.13■□□□□ 0.973e-6■□□□□ 11.1
U2AF1Q01081 KHSRP-204ENST00000595112 745 ntTSL 321.1■□□□□ 0.973e-6■□□□□ 11.1
U2AF1Q01081 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.963e-6■□□□□ 11.1
U2AF1Q01081 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.863e-6■□□□□ 11.1
U2AF1Q01081 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC20.11■□□□□ 0.813e-6■□□□□ 11.1
U2AF1Q01081 SCML1-205ENST00000419185 817 ntTSL 319.8■□□□□ 0.763e-6■□□□□ 11.1
U2AF1Q01081 KHSRP-210ENST00000599395 837 ntTSL 517.76■□□□□ 0.433e-6■□□□□ 11.1
U2AF1Q01081 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.41e-6■□□□□ 11.1
U2AF1Q01081 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.353e-6■□□□□ 11.1
U2AF1Q01081 HDLBP-241ENST00000487169 4339 ntTSL 217.2■□□□□ 0.343e-6■□□□□ 11.1
U2AF1Q01081 SCML1-201ENST00000380041 1997 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.323e-6■□□□□ 11.1
U2AF1Q01081 LGR5-202ENST00000536515 2664 ntTSL 1 (best) BASIC16.83■□□□□ 0.291e-6■□□□□ 11.1
U2AF1Q01081 ZMIZ1-202ENST00000446377 6686 ntTSL 5 BASIC16.47■□□□□ 0.233e-6■□□□□ 11.1
U2AF1Q01081 ABCB6-211ENST00000494639 552 ntTSL 216.42■□□□□ 0.223e-6■□□□□ 11.1
Retrieved 100 of 10,096 protein–RNA pairs in 44.5 ms