RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NISCHQ9Y2I1 1504 aa22.68■■□□□ 1.22
CUX1-221ENST00000622516 SHROOM4Q9ULL8 1493 aa19.35■□□□□ 0.69
CUX1-221ENST00000622516 CCDC180Q9P1Z9 1646 aa19.32■□□□□ 0.68
CUX1-221ENST00000622516 DCAF8L2P0C7V8 631 aa19.19■□□□□ 0.66
CUX1-221ENST00000622516 ZCCHC6Q5VYS8 1495 aaKnown RBP19.1■□□□□ 0.65
CUX1-221ENST00000622516 SUPT5HO00267 1087 aaKnown RBP18.84■□□□□ 0.61
CUX1-221ENST00000622516 DCAF1Q9Y4B6 1507 aa18.5■□□□□ 0.55
CUX1-221ENST00000622516 ABCC9O60706 1549 aa18.38■□□□□ 0.53
CUX1-221ENST00000622516 SCRIBQ14160 1630 aa18.23■□□□□ 0.51
CUX1-221ENST00000622516 CHIC1Q5VXU3 224 aa18.07■□□□□ 0.48
CUX1-221ENST00000622516 MYO15BQ96JP2 1530 aa18.06■□□□□ 0.48
CUX1-221ENST00000622516 NACADO15069 1562 aa17.98■□□□□ 0.47
CUX1-221ENST00000622516 RSF1Q96T23 1441 aaPredicted RBP17.88■□□□□ 0.45
CUX1-221ENST00000622516 CECR2Q9BXF3 1484 aa17.81■□□□□ 0.44
CUX1-221ENST00000622516 RB1CC1Q8TDY2 1594 aa17.77■□□□□ 0.44
CUX1-221ENST00000622516 MROH2BQ7Z745 1585 aa17.67■□□□□ 0.42
CUX1-221ENST00000622516 LOC105371045A0A1W2PR82 267 aa17.63■□□□□ 0.41
CUX1-221ENST00000622516 PABPN1Q86U42 306 aaKnown RBP eCLIP17.61■□□□□ 0.41
CUX1-221ENST00000622516 WIZO95785 1651 aa17.57■□□□□ 0.4
CUX1-221ENST00000622516 UNC13AQ9UPW8 1703 aa17.52■□□□□ 0.4
CUX1-221ENST00000622516 TRIM41Q8WV44 630 aa17.51■□□□□ 0.39
CUX1-221ENST00000622516 FAM9AQ8IZU1 332 aaPredicted RBP17.46■□□□□ 0.39
CUX1-221ENST00000622516 BAZ1AQ9NRL2 1556 aaPredicted RBP17.42■□□□□ 0.38
CUX1-221ENST00000622516 EHMT2Q96KQ7 1210 aa17.41■□□□□ 0.38
CUX1-221ENST00000622516 BICRAQ9NZM4 1560 aa17.33■□□□□ 0.36
CUX1-221ENST00000622516 SMARCA4P51532 1647 aa17.33■□□□□ 0.36
CUX1-221ENST00000622516 PCGF6Q9BYE7 350 aa17.29■□□□□ 0.36
CUX1-221ENST00000622516 CCDC88BA6NC98 1476 aa17.21■□□□□ 0.35
CUX1-221ENST00000622516 TOP2AP11388 1531 aaKnown RBP17.21■□□□□ 0.34
CUX1-221ENST00000622516 SMARCA2P51531 1590 aa17.13■□□□□ 0.33
CUX1-221ENST00000622516 ABCC8Q09428 1581 aa17.11■□□□□ 0.33
CUX1-221ENST00000622516 EIF4G1Q04637 1599 aaKnown RBP17.08■□□□□ 0.33
CUX1-221ENST00000622516 ATAD2BQ9ULI0 1458 aa16.99■□□□□ 0.31
CUX1-221ENST00000622516 HRCP23327 699 aa16.96■□□□□ 0.31
CUX1-221ENST00000622516 BAZ1BQ9UIG0 1483 aaKnown RBP16.94■□□□□ 0.3
CUX1-221ENST00000622516 PEG3Q9GZU2 1588 aa16.94■□□□□ 0.3
CUX1-221ENST00000622516 PPARGC1BQ86YN6 1023 aaKnown RBP16.93■□□□□ 0.3
CUX1-221ENST00000622516 TRIM26Q12899 539 aaPredicted RBP16.92■□□□□ 0.3
CUX1-221ENST00000622516 SOGA1O94964 1423 aa16.9■□□□□ 0.3
CUX1-221ENST00000622516 RUSC2Q8N2Y8 1516 aa16.85■□□□□ 0.29
CUX1-221ENST00000622516 WRNQ14191 1432 aaPredicted RBP eCLIP16.81■□□□□ 0.282e-6■■■■■ 54.1
CUX1-221ENST00000622516 CSRNP3Q8WYN3 585 aa16.77■□□□□ 0.28
CUX1-221ENST00000622516 UBTFP17480 764 aaKnown RBP16.75■□□□□ 0.27
CUX1-221ENST00000622516 TTBK1Q5TCY1 1321 aaPredicted RBP16.74■□□□□ 0.27
CUX1-221ENST00000622516 SYNJ1O43426 1573 aa16.73■□□□□ 0.27
CUX1-221ENST00000622516 NCAPD3P42695 1498 aa16.68■□□□□ 0.26
CUX1-221ENST00000622516 CEP162Q5TB80 1403 aa16.63■□□□□ 0.25
CUX1-221ENST00000622516 RANGAP1P46060 587 aaPredicted RBP16.63■□□□□ 0.25
CUX1-221ENST00000622516 EEA1Q15075 1411 aa16.6■□□□□ 0.25
CUX1-221ENST00000622516 HMGXB3Q12766 1538 aa16.6■□□□□ 0.25
CUX1-221ENST00000622516 TNIKQ9UKE5 1360 aa16.59■□□□□ 0.25
CUX1-221ENST00000622516 GOLGA3Q08378 1498 aa16.54■□□□□ 0.24
CUX1-221ENST00000622516 TOP2BQ02880 1626 aa16.49■□□□□ 0.23
CUX1-221ENST00000622516 RAPGEF2Q9Y4G8 1499 aa16.48■□□□□ 0.23
CUX1-221ENST00000622516 CFTRP13569 1480 aa16.47■□□□□ 0.23
CUX1-221ENST00000622516 CEP164Q9UPV0 1460 aa16.47■□□□□ 0.23
CUX1-221ENST00000622516 CC2D2AQ9P2K1 1620 aa16.47■□□□□ 0.23
CUX1-221ENST00000622516 CUX1P39880 1505 aa16.45■□□□□ 0.22
CUX1-221ENST00000622516 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.43■□□□□ 0.22
CUX1-221ENST00000622516 BIVM-ERCC5R4GMW8 1640 aa16.4■□□□□ 0.22
CUX1-221ENST00000622516 CLIP1P30622 1438 aa16.4■□□□□ 0.22
CUX1-221ENST00000622516 KIF21BO75037 1637 aa16.4■□□□□ 0.22
CUX1-221ENST00000622516 CADPSQ9ULU8 1353 aa16.39■□□□□ 0.21
CUX1-221ENST00000622516 DNAJC5BQ9UF47 199 aa16.34■□□□□ 0.21
CUX1-221ENST00000622516 ZEB1P37275 1124 aaPredicted RBP16.33■□□□□ 0.2
CUX1-221ENST00000622516 CCER1Q8TC90 406 aaPredicted RBP16.32■□□□□ 0.2
CUX1-221ENST00000622516 KIF27Q86VH2 1401 aa16.3■□□□□ 0.2
CUX1-221ENST00000622516 NESP48681 1621 aa16.29■□□□□ 0.2
CUX1-221ENST00000622516 PRXQ9BXM0 1461 aa16.28■□□□□ 0.2
CUX1-221ENST00000622516 APLP2Q06481 763 aa16.26■□□□□ 0.19
CUX1-221ENST00000622516 CUX2O14529 1486 aa16.25■□□□□ 0.19
CUX1-221ENST00000622516 VPS8Q8N3P4 1428 aa16.24■□□□□ 0.19
CUX1-221ENST00000622516 FANCD2Q9BXW9 1451 aa16.23■□□□□ 0.19
CUX1-221ENST00000622516 FGD5Q6ZNL6 1462 aa16.23■□□□□ 0.19
CUX1-221ENST00000622516 HNRNPUL2Q1KMD3 747 aaKnown RBP16.23■□□□□ 0.19
CUX1-221ENST00000622516 PRDM2Q13029 1718 aa16.22■□□□□ 0.19
CUX1-221ENST00000622516 IGF1RP08069 1367 aa16.19■□□□□ 0.18
CUX1-221ENST00000622516 ERICH3Q5RHP9 1530 aa16.19■□□□□ 0.18
CUX1-221ENST00000622516 RAD54L2Q9Y4B4 1467 aa16.16■□□□□ 0.18
CUX1-221ENST00000622516 ARAP1Q96P48 1450 aa16.13■□□□□ 0.17
CUX1-221ENST00000622516 KANK4Q5T7N3 995 aaPredicted RBP16.13■□□□□ 0.17
CUX1-221ENST00000622516 CARMIL1Q5VZK9 1371 aa16.12■□□□□ 0.17
CUX1-221ENST00000622516 PELP1Q8IZL8 1130 aaKnown RBP16.11■□□□□ 0.17
CUX1-221ENST00000622516 P3H3Q8IVL6 736 aa16.09■□□□□ 0.17
CUX1-221ENST00000622516 TOPBP1Q92547 1522 aa16.08■□□□□ 0.16
CUX1-221ENST00000622516 POLA1P09884 1462 aaPredicted RBP16.07■□□□□ 0.16
CUX1-221ENST00000622516 ARHGAP35Q9NRY4 1499 aa16.06■□□□□ 0.16
CUX1-221ENST00000622516 DNMBPQ6XZF7 1577 aa16.04■□□□□ 0.16
CUX1-221ENST00000622516 ATP1B4Q9UN42 357 aaPredicted RBP16.02■□□□□ 0.15
CUX1-221ENST00000622516 URB2Q14146 1524 aaKnown RBP16.01■□□□□ 0.15
CUX1-221ENST00000622516 TDRD9Q8NDG6 1382 aaKnown RBP16.01■□□□□ 0.15
CUX1-221ENST00000622516 LAMC3Q9Y6N6 1575 aa15.98■□□□□ 0.15
CUX1-221ENST00000622516 ABCA10Q8WWZ4 1543 aa15.97■□□□□ 0.15
CUX1-221ENST00000622516 ITGAEP38570 1179 aa15.96■□□□□ 0.15
CUX1-221ENST00000622516 PDS5BQ9NTI5 1447 aa15.96■□□□□ 0.14
CUX1-221ENST00000622516 KIF21AQ7Z4S6 1674 aa15.91■□□□□ 0.14
CUX1-221ENST00000622516 MYT1Q01538 1121 aa15.89■□□□□ 0.13
CUX1-221ENST00000622516 FHOD3Q2V2M9 1422 aa15.88■□□□□ 0.13
CUX1-221ENST00000622516 GAPVD1Q14C86 1478 aa15.85■□□□□ 0.13
CUX1-221ENST00000622516 CCNB3Q8WWL7 1395 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms