RNA–Protein interactions for RNA: ENST00000563047.1

GGA2-204, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 2, humanhuman

TSL 5

Gene GGA2, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA2-204ENST00000563047 NISCHQ9Y2I1 1504 aa53.28■■■■■ 6.12
GGA2-204ENST00000563047 ABCC9O60706 1549 aa47.88■■■■■ 5.26
GGA2-204ENST00000563047 CCDC180Q9P1Z9 1646 aa47.81■■■■■ 5.24
GGA2-204ENST00000563047 RB1CC1Q8TDY2 1594 aa45.53■■■■■ 4.88
GGA2-204ENST00000563047 NACADO15069 1562 aa45.21■■■■■ 4.83
GGA2-204ENST00000563047 DNAJC5BQ9UF47 199 aa45.01■■■■■ 4.8
GGA2-204ENST00000563047 DCAF8L2P0C7V8 631 aa44.98■■■■■ 4.79
GGA2-204ENST00000563047 PABPN1Q86U42 306 aaKnown RBP eCLIP44.59■■■■■ 4.73
GGA2-204ENST00000563047 MYO15BQ96JP2 1530 aa44.59■■■■■ 4.73
GGA2-204ENST00000563047 UNC13AQ9UPW8 1703 aa44.53■■■■■ 4.72
GGA2-204ENST00000563047 BICRAQ9NZM4 1560 aa44.26■■■■■ 4.68
GGA2-204ENST00000563047 ZCCHC6Q5VYS8 1495 aaKnown RBP44.15■■■■■ 4.66
GGA2-204ENST00000563047 DCAF1Q9Y4B6 1507 aa44■■■■■ 4.63
GGA2-204ENST00000563047 SHROOM4Q9ULL8 1493 aa43.6■■■■■ 4.57
GGA2-204ENST00000563047 SCRIBQ14160 1630 aa43.59■■■■■ 4.57
GGA2-204ENST00000563047 CC2D2AQ9P2K1 1620 aa43.26■■■■■ 4.52
GGA2-204ENST00000563047 EIF4G1Q04637 1599 aaKnown RBP43.15■■■■■ 4.5
GGA2-204ENST00000563047 CECR2Q9BXF3 1484 aa43.13■■■■■ 4.5
GGA2-204ENST00000563047 NCAPD3P42695 1498 aa41.77■■■■■ 4.28
GGA2-204ENST00000563047 ATAD2BQ9ULI0 1458 aa41.64■■■■■ 4.26
GGA2-204ENST00000563047 SMARCA4P51532 1647 aa41.58■■■■■ 4.25
GGA2-204ENST00000563047 SMARCA2P51531 1590 aa41.49■■■■■ 4.23
GGA2-204ENST00000563047 HMGXB3Q12766 1538 aa41.44■■■■■ 4.22
GGA2-204ENST00000563047 BAZ1AQ9NRL2 1556 aaPredicted RBP41.35■■■■■ 4.21
GGA2-204ENST00000563047 DNAJC5Q9H3Z4 198 aa41.32■■■■■ 4.21
GGA2-204ENST00000563047 ERCC6Q03468 1493 aa41.32■■■■■ 4.2
GGA2-204ENST00000563047 CUX2O14529 1486 aa41.28■■■■■ 4.2
GGA2-204ENST00000563047 BAZ1BQ9UIG0 1483 aaKnown RBP41.21■■■■■ 4.19
GGA2-204ENST00000563047 PEG3Q9GZU2 1588 aa41.17■■■■■ 4.18
GGA2-204ENST00000563047 NESP48681 1621 aa41.15■■■■■ 4.18
GGA2-204ENST00000563047 MROH2BQ7Z745 1585 aa41.08■■■■■ 4.17
GGA2-204ENST00000563047 LAMC3Q9Y6N6 1575 aa40.81■■■■■ 4.12
GGA2-204ENST00000563047 THOC2Q8NI27 1593 aaKnown RBP40.72■■■■■ 4.11
GGA2-204ENST00000563047 KIF21AQ7Z4S6 1674 aa40.59■■■■■ 4.09
GGA2-204ENST00000563047 WIZO95785 1651 aa40.57■■■■■ 4.09
GGA2-204ENST00000563047 PDS5BQ9NTI5 1447 aa40.57■■■■■ 4.08
GGA2-204ENST00000563047 CADPSQ9ULU8 1353 aa40.49■■■■■ 4.07
GGA2-204ENST00000563047 MRC2Q9UBG0 1479 aa40.24■■■■■ 4.03
GGA2-204ENST00000563047 RSF1Q96T23 1441 aaPredicted RBP40.2■■■■■ 4.03
GGA2-204ENST00000563047 WDR62O43379 1518 aa40.15■■■■■ 4.02
GGA2-204ENST00000563047 CEP164Q9UPV0 1460 aa40.07■■■■■ 4
GGA2-204ENST00000563047 TOP2AP11388 1531 aaKnown RBP40.04■■■■■ 4
GGA2-204ENST00000563047 FANCD2Q9BXW9 1451 aa40.03■■■■■ 4
GGA2-204ENST00000563047 CFTRP13569 1480 aa40.02■■■■■ 4
GGA2-204ENST00000563047 URB2Q14146 1524 aaKnown RBP39.72■■■■□ 3.95
GGA2-204ENST00000563047 CCDC88BA6NC98 1476 aa39.61■■■■□ 3.93
GGA2-204ENST00000563047 PRDM2Q13029 1718 aa39.59■■■■□ 3.93
GGA2-204ENST00000563047 TRIM41Q8WV44 630 aa39.47■■■■□ 3.91
GGA2-204ENST00000563047 OSCARQ8IYS5 282 aa39.38■■■■□ 3.89
GGA2-204ENST00000563047 TOPBP1Q92547 1522 aa39.27■■■■□ 3.88
GGA2-204ENST00000563047 IFT140Q96RY7 1462 aa39.27■■■■□ 3.88
GGA2-204ENST00000563047 ZNF608Q9ULD9 1512 aaPredicted RBP39.24■■■■□ 3.87
GGA2-204ENST00000563047 ABCC8Q09428 1581 aa39.15■■■■□ 3.86
GGA2-204ENST00000563047 DNMBPQ6XZF7 1577 aa39.11■■■■□ 3.85
GGA2-204ENST00000563047 EIF4G3O43432 1585 aaKnown RBP38.99■■■■□ 3.83
GGA2-204ENST00000563047 TARBP1Q13395 1621 aaKnown RBP38.93■■■■□ 3.82
GGA2-204ENST00000563047 RIMBP3CA6NJZ7 1639 aa38.89■■■■□ 3.82
GGA2-204ENST00000563047 RIMBP3BA6NNM3 1639 aa38.89■■■■□ 3.82
GGA2-204ENST00000563047 RIMBP3Q9UFD9 1639 aa38.89■■■■□ 3.82
GGA2-204ENST00000563047 AQRO60306 1485 aaKnown RBP eCLIP38.87■■■■□ 3.811e-8■■■■□ 25.3
GGA2-204ENST00000563047 POLA1P09884 1462 aaPredicted RBP38.87■■■■□ 3.81
GGA2-204ENST00000563047 ARHGEF11O15085 1522 aa38.76■■■■□ 3.8
GGA2-204ENST00000563047 RAD54L2Q9Y4B4 1467 aa38.74■■■■□ 3.79
GGA2-204ENST00000563047 CHD1O14646 1710 aa38.72■■■■□ 3.79
GGA2-204ENST00000563047 SOGA1O94964 1423 aa38.69■■■■□ 3.78
GGA2-204ENST00000563047 TDRD9Q8NDG6 1382 aaKnown RBP38.63■■■■□ 3.77
GGA2-204ENST00000563047 FGD5Q6ZNL6 1462 aa38.61■■■■□ 3.77
GGA2-204ENST00000563047 FBLN2P98095 1184 aa38.6■■■■□ 3.77
GGA2-204ENST00000563047 CUX1P39880 1505 aa38.59■■■■□ 3.77
GGA2-204ENST00000563047 WDR97A6NE52 1622 aa38.49■■■■□ 3.75
GGA2-204ENST00000563047 CYB5RLQ6IPT4 315 aa38.48■■■■□ 3.75
GGA2-204ENST00000563047 SNAPC4Q5SXM2 1469 aa38.47■■■■□ 3.75
GGA2-204ENST00000563047 ARAP1Q96P48 1450 aa38.4■■■■□ 3.74
GGA2-204ENST00000563047 SUPT5HO00267 1087 aaKnown RBP38.38■■■■□ 3.73
GGA2-204ENST00000563047 GRIN2BQ13224 1484 aa38.35■■■■□ 3.73
GGA2-204ENST00000563047 MAGI1Q96QZ7 1491 aaPredicted RBP38.35■■■■□ 3.73
GGA2-204ENST00000563047 CHMP7Q8WUX9 453 aaPredicted RBP38.31■■■■□ 3.72
GGA2-204ENST00000563047 CLASP1Q7Z460 1538 aa38.28■■■■□ 3.72
GGA2-204ENST00000563047 SYNJ1O43426 1573 aa38.23■■■■□ 3.71
GGA2-204ENST00000563047 SYNJ2O15056 1496 aa38.22■■■■□ 3.71
GGA2-204ENST00000563047 GAPVD1Q14C86 1478 aa38.22■■■■□ 3.71
GGA2-204ENST00000563047 PBRM1Q86U86 1689 aa38.2■■■■□ 3.71
GGA2-204ENST00000563047 ABCA10Q8WWZ4 1543 aa38.18■■■■□ 3.7
GGA2-204ENST00000563047 ABCA5Q8WWZ7 1642 aa38.12■■■■□ 3.69
GGA2-204ENST00000563047 TRHP20396 242 aaPredicted RBP38.04■■■■□ 3.68
GGA2-204ENST00000563047 WRNQ14191 1432 aaPredicted RBP eCLIP38■■■■□ 3.671e-7■■■■■ 66.8
GGA2-204ENST00000563047 TOP2BQ02880 1626 aa37.94■■■■□ 3.66
GGA2-204ENST00000563047 BIVM-ERCC5R4GMW8 1640 aa37.94■■■■□ 3.66
GGA2-204ENST00000563047 GRIN2AQ12879 1464 aa37.86■■■■□ 3.65
GGA2-204ENST00000563047 ADAMTS12P58397 1594 aa37.84■■■■□ 3.65
GGA2-204ENST00000563047 NUP160Q12769 1436 aa37.75■■■■□ 3.63
GGA2-204ENST00000563047 CEP170Q5SW79 1584 aa37.74■■■■□ 3.63
GGA2-204ENST00000563047 FHAD1B1AJZ9 1412 aa37.72■■■■□ 3.63
GGA2-204ENST00000563047 ERCC6L2Q5T890 1561 aa37.71■■■■□ 3.63
GGA2-204ENST00000563047 ERICH3Q5RHP9 1530 aa37.69■■■■□ 3.62
GGA2-204ENST00000563047 SHROOM2Q13796 1616 aa37.58■■■■□ 3.61
GGA2-204ENST00000563047 PRG4Q92954 1404 aaPredicted RBP37.37■■■■□ 3.57
GGA2-204ENST00000563047 JPH4Q96JJ6 628 aa37.36■■■■□ 3.57
GGA2-204ENST00000563047 RUSC2Q8N2Y8 1516 aa37.3■■■■□ 3.56
GGA2-204ENST00000563047 IGF1RP08069 1367 aa37.22■■■■□ 3.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms