RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 NISCHQ9Y2I1 1504 aa23.2■■□□□ 1.3
CUX1-205ENST00000425244 CCDC180Q9P1Z9 1646 aa20.13■□□□□ 0.81
CUX1-205ENST00000425244 DCAF8L2P0C7V8 631 aa19.61■□□□□ 0.73
CUX1-205ENST00000425244 ZCCHC6Q5VYS8 1495 aaKnown RBP19.44■□□□□ 0.7
CUX1-205ENST00000425244 ABCC9O60706 1549 aa19.42■□□□□ 0.7
CUX1-205ENST00000425244 SHROOM4Q9ULL8 1493 aa19.23■□□□□ 0.67
CUX1-205ENST00000425244 DCAF1Q9Y4B6 1507 aa19.02■□□□□ 0.64
CUX1-205ENST00000425244 NACADO15069 1562 aa18.82■□□□□ 0.6
CUX1-205ENST00000425244 MYO15BQ96JP2 1530 aa18.78■□□□□ 0.6
CUX1-205ENST00000425244 SCRIBQ14160 1630 aa18.76■□□□□ 0.59
CUX1-205ENST00000425244 RB1CC1Q8TDY2 1594 aa18.73■□□□□ 0.59
CUX1-205ENST00000425244 SUPT5HO00267 1087 aaKnown RBP18.57■□□□□ 0.56
CUX1-205ENST00000425244 PABPN1Q86U42 306 aaKnown RBP eCLIP18.4■□□□□ 0.54
CUX1-205ENST00000425244 UNC13AQ9UPW8 1703 aa18.38■□□□□ 0.53
CUX1-205ENST00000425244 BICRAQ9NZM4 1560 aa18.17■□□□□ 0.5
CUX1-205ENST00000425244 CECR2Q9BXF3 1484 aa18.15■□□□□ 0.5
CUX1-205ENST00000425244 RSF1Q96T23 1441 aaPredicted RBP18.03■□□□□ 0.48
CUX1-205ENST00000425244 MROH2BQ7Z745 1585 aa18■□□□□ 0.47
CUX1-205ENST00000425244 CHIC1Q5VXU3 224 aa17.93■□□□□ 0.46
CUX1-205ENST00000425244 BAZ1AQ9NRL2 1556 aaPredicted RBP17.91■□□□□ 0.46
CUX1-205ENST00000425244 WIZO95785 1651 aa17.87■□□□□ 0.45
CUX1-205ENST00000425244 SMARCA4P51532 1647 aa17.86■□□□□ 0.45
CUX1-205ENST00000425244 EIF4G1Q04637 1599 aaKnown RBP17.67■□□□□ 0.42
CUX1-205ENST00000425244 ATAD2BQ9ULI0 1458 aa17.6■□□□□ 0.41
CUX1-205ENST00000425244 TOP2AP11388 1531 aaKnown RBP17.57■□□□□ 0.4
CUX1-205ENST00000425244 BAZ1BQ9UIG0 1483 aaKnown RBP17.54■□□□□ 0.4
CUX1-205ENST00000425244 SMARCA2P51531 1590 aa17.53■□□□□ 0.4
CUX1-205ENST00000425244 PEG3Q9GZU2 1588 aa17.52■□□□□ 0.39
CUX1-205ENST00000425244 CCDC88BA6NC98 1476 aa17.48■□□□□ 0.39
CUX1-205ENST00000425244 CC2D2AQ9P2K1 1620 aa17.46■□□□□ 0.39
CUX1-205ENST00000425244 LOC105371045A0A1W2PR82 267 aa17.45■□□□□ 0.38
CUX1-205ENST00000425244 NCAPD3P42695 1498 aa17.4■□□□□ 0.38
CUX1-205ENST00000425244 PCGF6Q9BYE7 350 aa17.38■□□□□ 0.37
CUX1-205ENST00000425244 HMGXB3Q12766 1538 aa17.33■□□□□ 0.37
CUX1-205ENST00000425244 HRCP23327 699 aa17.27■□□□□ 0.36
CUX1-205ENST00000425244 TRIM41Q8WV44 630 aa17.27■□□□□ 0.36
CUX1-205ENST00000425244 DNAJC5BQ9UF47 199 aa17.25■□□□□ 0.35
CUX1-205ENST00000425244 FAM9AQ8IZU1 332 aaPredicted RBP17.18■□□□□ 0.34
CUX1-205ENST00000425244 ABCC8Q09428 1581 aa17.18■□□□□ 0.34
CUX1-205ENST00000425244 EHMT2Q96KQ7 1210 aa17.1■□□□□ 0.33
CUX1-205ENST00000425244 CADPSQ9ULU8 1353 aa17.02■□□□□ 0.32
CUX1-205ENST00000425244 CFTRP13569 1480 aa17.02■□□□□ 0.32
CUX1-205ENST00000425244 NESP48681 1621 aa17.01■□□□□ 0.31
CUX1-205ENST00000425244 TRIM26Q12899 539 aaPredicted RBP17■□□□□ 0.31
CUX1-205ENST00000425244 WRNQ14191 1432 aaPredicted RBP eCLIP16.99■□□□□ 0.312e-6■■■■■ 54.1
CUX1-205ENST00000425244 PPARGC1BQ86YN6 1023 aaKnown RBP16.99■□□□□ 0.31
CUX1-205ENST00000425244 SYNJ1O43426 1573 aa16.92■□□□□ 0.3
CUX1-205ENST00000425244 FANCD2Q9BXW9 1451 aa16.86■□□□□ 0.29
CUX1-205ENST00000425244 PRDM2Q13029 1718 aa16.85■□□□□ 0.29
CUX1-205ENST00000425244 SOGA1O94964 1423 aa16.83■□□□□ 0.29
CUX1-205ENST00000425244 LAMC3Q9Y6N6 1575 aa16.82■□□□□ 0.28
CUX1-205ENST00000425244 CUX1P39880 1505 aa16.81■□□□□ 0.28
CUX1-205ENST00000425244 RUSC2Q8N2Y8 1516 aa16.79■□□□□ 0.28
CUX1-205ENST00000425244 TOP2BQ02880 1626 aa16.78■□□□□ 0.28
CUX1-205ENST00000425244 PDS5BQ9NTI5 1447 aa16.76■□□□□ 0.27
CUX1-205ENST00000425244 CEP164Q9UPV0 1460 aa16.75■□□□□ 0.27
CUX1-205ENST00000425244 BIVM-ERCC5R4GMW8 1640 aa16.73■□□□□ 0.27
CUX1-205ENST00000425244 KIF21AQ7Z4S6 1674 aa16.72■□□□□ 0.27
CUX1-205ENST00000425244 CSRNP3Q8WYN3 585 aa16.68■□□□□ 0.26
CUX1-205ENST00000425244 FGD5Q6ZNL6 1462 aa16.66■□□□□ 0.26
CUX1-205ENST00000425244 TOPBP1Q92547 1522 aa16.65■□□□□ 0.26
CUX1-205ENST00000425244 PELP1Q8IZL8 1130 aaKnown RBP16.65■□□□□ 0.26
CUX1-205ENST00000425244 URB2Q14146 1524 aaKnown RBP16.64■□□□□ 0.26
CUX1-205ENST00000425244 ERCC6Q03468 1493 aa16.64■□□□□ 0.25
CUX1-205ENST00000425244 DNMBPQ6XZF7 1577 aa16.62■□□□□ 0.25
CUX1-205ENST00000425244 RAD54L2Q9Y4B4 1467 aa16.61■□□□□ 0.25
CUX1-205ENST00000425244 UBTFP17480 764 aaKnown RBP16.6■□□□□ 0.25
CUX1-205ENST00000425244 EEA1Q15075 1411 aa16.59■□□□□ 0.25
CUX1-205ENST00000425244 ZEB1P37275 1124 aaPredicted RBP16.59■□□□□ 0.25
CUX1-205ENST00000425244 CUX2O14529 1486 aa16.58■□□□□ 0.24
CUX1-205ENST00000425244 POLA1P09884 1462 aaPredicted RBP16.58■□□□□ 0.24
CUX1-205ENST00000425244 KIF27Q86VH2 1401 aa16.55■□□□□ 0.24
CUX1-205ENST00000425244 RANGAP1P46060 587 aaPredicted RBP16.54■□□□□ 0.24
CUX1-205ENST00000425244 MRC2Q9UBG0 1479 aa16.53■□□□□ 0.24
CUX1-205ENST00000425244 TTBK1Q5TCY1 1321 aaPredicted RBP16.53■□□□□ 0.24
CUX1-205ENST00000425244 TDRD9Q8NDG6 1382 aaKnown RBP16.49■□□□□ 0.23
CUX1-205ENST00000425244 RAPGEF2Q9Y4G8 1499 aa16.46■□□□□ 0.23
CUX1-205ENST00000425244 CEP162Q5TB80 1403 aa16.46■□□□□ 0.23
CUX1-205ENST00000425244 GOLGA3Q08378 1498 aa16.45■□□□□ 0.22
CUX1-205ENST00000425244 ABCA10Q8WWZ4 1543 aa16.43■□□□□ 0.22
CUX1-205ENST00000425244 IGF1RP08069 1367 aa16.43■□□□□ 0.22
CUX1-205ENST00000425244 TNIKQ9UKE5 1360 aa16.41■□□□□ 0.22
CUX1-205ENST00000425244 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.4■□□□□ 0.22
CUX1-205ENST00000425244 WDR62O43379 1518 aa16.4■□□□□ 0.22
CUX1-205ENST00000425244 KIF21BO75037 1637 aa16.39■□□□□ 0.21
CUX1-205ENST00000425244 THOC2Q8NI27 1593 aaKnown RBP16.38■□□□□ 0.21
CUX1-205ENST00000425244 AQRO60306 1485 aaKnown RBP eCLIP16.37■□□□□ 0.214e-7■■■■□ 26.1
CUX1-205ENST00000425244 PRXQ9BXM0 1461 aa16.37■□□□□ 0.21
CUX1-205ENST00000425244 CARMIL1Q5VZK9 1371 aa16.37■□□□□ 0.21
CUX1-205ENST00000425244 CCER1Q8TC90 406 aaPredicted RBP16.36■□□□□ 0.21
CUX1-205ENST00000425244 TARBP1Q13395 1621 aaKnown RBP16.36■□□□□ 0.21
CUX1-205ENST00000425244 GAPVD1Q14C86 1478 aa16.36■□□□□ 0.21
CUX1-205ENST00000425244 ZNF608Q9ULD9 1512 aaPredicted RBP16.34■□□□□ 0.21
CUX1-205ENST00000425244 WDR97A6NE52 1622 aa16.34■□□□□ 0.21
CUX1-205ENST00000425244 IFT140Q96RY7 1462 aa16.3■□□□□ 0.2
CUX1-205ENST00000425244 ABCA5Q8WWZ7 1642 aa16.29■□□□□ 0.2
CUX1-205ENST00000425244 ERICH3Q5RHP9 1530 aa16.28■□□□□ 0.2
CUX1-205ENST00000425244 MYT1Q01538 1121 aa16.25■□□□□ 0.19
CUX1-205ENST00000425244 CLIP1P30622 1438 aa16.25■□□□□ 0.19
CUX1-205ENST00000425244 FBLN2P98095 1184 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms