RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 NISCHQ9Y2I1 1504 aa22.77■■□□□ 1.24
CUX1-218ENST00000560541 SHROOM4Q9ULL8 1493 aa19.85■□□□□ 0.77
CUX1-218ENST00000560541 SUPT5HO00267 1087 aaKnown RBP19.54■□□□□ 0.72
CUX1-218ENST00000560541 ZCCHC6Q5VYS8 1495 aaKnown RBP19.27■□□□□ 0.68
CUX1-218ENST00000560541 DCAF8L2P0C7V8 631 aa19.18■□□□□ 0.66
CUX1-218ENST00000560541 CCDC180Q9P1Z9 1646 aa19.13■□□□□ 0.65
CUX1-218ENST00000560541 MYO15BQ96JP2 1530 aa18.94■□□□□ 0.62
CUX1-218ENST00000560541 CHIC1Q5VXU3 224 aa18.94■□□□□ 0.62
CUX1-218ENST00000560541 PELP1Q8IZL8 1130 aaKnown RBP18.83■□□□□ 0.6
CUX1-218ENST00000560541 PCGF6Q9BYE7 350 aa18.65■□□□□ 0.58
CUX1-218ENST00000560541 HRCP23327 699 aa18.65■□□□□ 0.58
CUX1-218ENST00000560541 DCAF1Q9Y4B6 1507 aa18.53■□□□□ 0.56
CUX1-218ENST00000560541 LOC105371045A0A1W2PR82 267 aa18.52■□□□□ 0.55
CUX1-218ENST00000560541 PPARGC1BQ86YN6 1023 aaKnown RBP18.41■□□□□ 0.54
CUX1-218ENST00000560541 MYT1Q01538 1121 aa18.26■□□□□ 0.51
CUX1-218ENST00000560541 ABCC9O60706 1549 aa18.22■□□□□ 0.51
CUX1-218ENST00000560541 SCRIBQ14160 1630 aa18.21■□□□□ 0.51
CUX1-218ENST00000560541 RSF1Q96T23 1441 aaPredicted RBP18.14■□□□□ 0.5
CUX1-218ENST00000560541 TRIM26Q12899 539 aaPredicted RBP18.12■□□□□ 0.49
CUX1-218ENST00000560541 FAM9AQ8IZU1 332 aaPredicted RBP18.1■□□□□ 0.49
CUX1-218ENST00000560541 TRIM41Q8WV44 630 aa18.09■□□□□ 0.49
CUX1-218ENST00000560541 EHMT2Q96KQ7 1210 aa18.07■□□□□ 0.48
CUX1-218ENST00000560541 RB1CC1Q8TDY2 1594 aa18.02■□□□□ 0.47
CUX1-218ENST00000560541 SCAF1Q9H7N4 1312 aaKnown RBP17.96■□□□□ 0.47
CUX1-218ENST00000560541 CECR2Q9BXF3 1484 aa17.87■□□□□ 0.45
CUX1-218ENST00000560541 MROH2BQ7Z745 1585 aa17.78■□□□□ 0.44
CUX1-218ENST00000560541 ZEB1P37275 1124 aaPredicted RBP17.71■□□□□ 0.43
CUX1-218ENST00000560541 NACADO15069 1562 aa17.7■□□□□ 0.42
CUX1-218ENST00000560541 WIZO95785 1651 aa17.7■□□□□ 0.42
CUX1-218ENST00000560541 TTBK1Q5TCY1 1321 aaPredicted RBP17.51■□□□□ 0.39
CUX1-218ENST00000560541 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.5■□□□□ 0.39
CUX1-218ENST00000560541 BAZ1AQ9NRL2 1556 aaPredicted RBP17.5■□□□□ 0.39
CUX1-218ENST00000560541 ABCC8Q09428 1581 aa17.43■□□□□ 0.38
CUX1-218ENST00000560541 CCER1Q8TC90 406 aaPredicted RBP17.42■□□□□ 0.38
CUX1-218ENST00000560541 EIF4G1Q04637 1599 aaKnown RBP17.42■□□□□ 0.38
CUX1-218ENST00000560541 CCDC88BA6NC98 1476 aa17.39■□□□□ 0.37
CUX1-218ENST00000560541 BCL11AQ9H165 835 aa17.34■□□□□ 0.37
CUX1-218ENST00000560541 PRKCSHP14314 528 aaPredicted RBP17.34■□□□□ 0.37
CUX1-218ENST00000560541 TOP2AP11388 1531 aaKnown RBP17.33■□□□□ 0.36
CUX1-218ENST00000560541 SOGA1O94964 1423 aa17.31■□□□□ 0.36
CUX1-218ENST00000560541 SMARCA4P51532 1647 aa17.3■□□□□ 0.36
CUX1-218ENST00000560541 SMARCA2P51531 1590 aa17.28■□□□□ 0.36
CUX1-218ENST00000560541 CEP162Q5TB80 1403 aa17.27■□□□□ 0.36
CUX1-218ENST00000560541 UBTFP17480 764 aaKnown RBP17.25■□□□□ 0.35
CUX1-218ENST00000560541 PABPN1Q86U42 306 aaKnown RBP eCLIP17.23■□□□□ 0.35
CUX1-218ENST00000560541 RUSC2Q8N2Y8 1516 aa17.23■□□□□ 0.35
CUX1-218ENST00000560541 GTF3C3Q9Y5Q9 886 aa17.21■□□□□ 0.35
CUX1-218ENST00000560541 CSRNP3Q8WYN3 585 aa17.2■□□□□ 0.34
CUX1-218ENST00000560541 UNC13AQ9UPW8 1703 aa17.19■□□□□ 0.34
CUX1-218ENST00000560541 NEUROD1Q13562 356 aa17.19■□□□□ 0.34
CUX1-218ENST00000560541 WRNQ14191 1432 aaPredicted RBP eCLIP17.18■□□□□ 0.346e-6■■■□□ 16.7
CUX1-218ENST00000560541 ACIN1Q9UKV3 1341 aaKnown RBP17.16■□□□□ 0.34
CUX1-218ENST00000560541 TNIKQ9UKE5 1360 aa17.16■□□□□ 0.34
CUX1-218ENST00000560541 DIEXFQ68CQ4 756 aaKnown RBP17.14■□□□□ 0.33
CUX1-218ENST00000560541 EEA1Q15075 1411 aa17.06■□□□□ 0.32
CUX1-218ENST00000560541 GOLGA3Q08378 1498 aa17.04■□□□□ 0.32
CUX1-218ENST00000560541 RANGAP1P46060 587 aaPredicted RBP17.03■□□□□ 0.32
CUX1-218ENST00000560541 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.31
CUX1-218ENST00000560541 CENPBP07199 599 aaPredicted RBP17■□□□□ 0.31
CUX1-218ENST00000560541 BICRAQ9NZM4 1560 aa16.98■□□□□ 0.31
CUX1-218ENST00000560541 SYNJ1O43426 1573 aa16.96■□□□□ 0.3
CUX1-218ENST00000560541 ZNF316A6NFI3 1004 aaPredicted RBP16.92■□□□□ 0.3
CUX1-218ENST00000560541 CLIP1P30622 1438 aa16.91■□□□□ 0.3
CUX1-218ENST00000560541 CEP164Q9UPV0 1460 aa16.91■□□□□ 0.3
CUX1-218ENST00000560541 YTHDC1Q96MU7 727 aaKnown RBP16.89■□□□□ 0.3
CUX1-218ENST00000560541 APLP2Q06481 763 aa16.86■□□□□ 0.29
CUX1-218ENST00000560541 PEG3Q9GZU2 1588 aa16.86■□□□□ 0.29
CUX1-218ENST00000560541 RAPGEF2Q9Y4G8 1499 aa16.85■□□□□ 0.29
CUX1-218ENST00000560541 ATAD2BQ9ULI0 1458 aa16.85■□□□□ 0.29
CUX1-218ENST00000560541 BAZ1BQ9UIG0 1483 aaKnown RBP16.84■□□□□ 0.29
CUX1-218ENST00000560541 KIF21BO75037 1637 aa16.83■□□□□ 0.29
CUX1-218ENST00000560541 VPS8Q8N3P4 1428 aa16.82■□□□□ 0.28
CUX1-218ENST00000560541 MIER1Q8N108 512 aa16.78■□□□□ 0.28
CUX1-218ENST00000560541 ERICH6Q7L0X2 663 aa16.68■□□□□ 0.26
CUX1-218ENST00000560541 ANP32EQ9BTT0 268 aa16.66■□□□□ 0.26
CUX1-218ENST00000560541 TOP2BQ02880 1626 aa16.66■□□□□ 0.26
CUX1-218ENST00000560541 KANK4Q5T7N3 995 aaPredicted RBP16.64■□□□□ 0.25
CUX1-218ENST00000560541 ARAP1Q96P48 1450 aa16.59■□□□□ 0.25
CUX1-218ENST00000560541 PRXQ9BXM0 1461 aa16.57■□□□□ 0.24
CUX1-218ENST00000560541 DHX57Q6P158 1386 aaKnown RBP16.56■□□□□ 0.24
CUX1-218ENST00000560541 ITGAEP38570 1179 aa16.55■□□□□ 0.24
CUX1-218ENST00000560541 BIVM-ERCC5R4GMW8 1640 aa16.55■□□□□ 0.24
CUX1-218ENST00000560541 CUX1P39880 1505 aa16.52■□□□□ 0.24
CUX1-218ENST00000560541 ERICH3Q5RHP9 1530 aa16.52■□□□□ 0.24
CUX1-218ENST00000560541 KIF27Q86VH2 1401 aa16.49■□□□□ 0.23
CUX1-218ENST00000560541 CLSPNQ9HAW4 1339 aa16.44■□□□□ 0.22
CUX1-218ENST00000560541 NCAPD3P42695 1498 aa16.43■□□□□ 0.22
CUX1-218ENST00000560541 ARHGAP35Q9NRY4 1499 aa16.42■□□□□ 0.22
CUX1-218ENST00000560541 RRBP1Q9P2E9 1410 aaKnown RBP16.41■□□□□ 0.22
CUX1-218ENST00000560541 CCNB3Q8WWL7 1395 aa16.41■□□□□ 0.22
CUX1-218ENST00000560541 HMGXB3Q12766 1538 aa16.4■□□□□ 0.22
CUX1-218ENST00000560541 CFTRP13569 1480 aa16.38■□□□□ 0.21
CUX1-218ENST00000560541 CUX2O14529 1486 aa16.35■□□□□ 0.21
CUX1-218ENST00000560541 P3H3Q8IVL6 736 aa16.32■□□□□ 0.2
CUX1-218ENST00000560541 RAB3GAP2Q9H2M9 1393 aa16.32■□□□□ 0.2
CUX1-218ENST00000560541 ATP1B4Q9UN42 357 aaPredicted RBP16.32■□□□□ 0.2
CUX1-218ENST00000560541 IGF1RP08069 1367 aa16.31■□□□□ 0.2
CUX1-218ENST00000560541 FAM50AQ14320 339 aaKnown RBP16.29■□□□□ 0.2
CUX1-218ENST00000560541 ANO8Q9HCE9 1232 aaPredicted RBP16.29■□□□□ 0.2
CUX1-218ENST00000560541 KCNH8Q96L42 1107 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 180 ms