RNA–Protein interactions for RNA: ENST00000536515.5

LGR5-202, Transcript of leucine rich repeat containing G protein-coupled receptor 5, humanhuman

TSL 1 (best) BASIC

Gene LGR5, Length 2,664 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LGR5-202ENST00000536515 NISCHQ9Y2I1 1504 aa27.25■■□□□ 1.95
LGR5-202ENST00000536515 CCDC180Q9P1Z9 1646 aa24.08■■□□□ 1.45
LGR5-202ENST00000536515 SHROOM4Q9ULL8 1493 aa23.11■■□□□ 1.29
LGR5-202ENST00000536515 ABCC9O60706 1549 aa22.95■■□□□ 1.26
LGR5-202ENST00000536515 ZCCHC6Q5VYS8 1495 aaKnown RBP22.83■■□□□ 1.25
LGR5-202ENST00000536515 SUPT5HO00267 1087 aaKnown RBP22.7■■□□□ 1.22
LGR5-202ENST00000536515 DCAF1Q9Y4B6 1507 aa22.63■■□□□ 1.21
LGR5-202ENST00000536515 MYO15BQ96JP2 1530 aa22.55■■□□□ 1.2
LGR5-202ENST00000536515 NACADO15069 1562 aa22.48■■□□□ 1.19
LGR5-202ENST00000536515 DCAF8L2P0C7V8 631 aa22.42■■□□□ 1.18
LGR5-202ENST00000536515 RB1CC1Q8TDY2 1594 aa22.37■■□□□ 1.17
LGR5-202ENST00000536515 CHIC1Q5VXU3 224 aa22.08■■□□□ 1.12
LGR5-202ENST00000536515 SCRIBQ14160 1630 aa21.93■■□□□ 1.1
LGR5-202ENST00000536515 UNC13AQ9UPW8 1703 aa21.91■■□□□ 1.1
LGR5-202ENST00000536515 BICRAQ9NZM4 1560 aa21.68■■□□□ 1.06
LGR5-202ENST00000536515 HRCP23327 699 aa21.51■■□□□ 1.03
LGR5-202ENST00000536515 PCGF6Q9BYE7 350 aa21.49■■□□□ 1.03
LGR5-202ENST00000536515 PABPN1Q86U42 306 aaKnown RBP eCLIP21.47■■□□□ 1.03
LGR5-202ENST00000536515 LOC105371045A0A1W2PR82 267 aa21.45■■□□□ 1.02
LGR5-202ENST00000536515 RSF1Q96T23 1441 aaPredicted RBP21.38■■□□□ 1.01
LGR5-202ENST00000536515 CECR2Q9BXF3 1484 aa21.13■□□□□ 0.97
LGR5-202ENST00000536515 TRIM41Q8WV44 630 aa21.12■□□□□ 0.97
LGR5-202ENST00000536515 BAZ1AQ9NRL2 1556 aaPredicted RBP21.1■□□□□ 0.97
LGR5-202ENST00000536515 PPARGC1BQ86YN6 1023 aaKnown RBP21.09■□□□□ 0.97
LGR5-202ENST00000536515 SMARCA4P51532 1647 aa21.06■□□□□ 0.96
LGR5-202ENST00000536515 EIF4G1Q04637 1599 aaKnown RBP21.06■□□□□ 0.96
LGR5-202ENST00000536515 TRIM26Q12899 539 aaPredicted RBP21.03■□□□□ 0.96
LGR5-202ENST00000536515 MROH2BQ7Z745 1585 aa20.99■□□□□ 0.95
LGR5-202ENST00000536515 FAM9AQ8IZU1 332 aaPredicted RBP20.98■□□□□ 0.95
LGR5-202ENST00000536515 PEG3Q9GZU2 1588 aa20.88■□□□□ 0.93
LGR5-202ENST00000536515 WIZO95785 1651 aa20.87■□□□□ 0.93
LGR5-202ENST00000536515 CC2D2AQ9P2K1 1620 aa20.84■□□□□ 0.93
LGR5-202ENST00000536515 EHMT2Q96KQ7 1210 aa20.83■□□□□ 0.92
LGR5-202ENST00000536515 SMARCA2P51531 1590 aa20.82■□□□□ 0.92
LGR5-202ENST00000536515 ATAD2BQ9ULI0 1458 aa20.79■□□□□ 0.92
LGR5-202ENST00000536515 NCAPD3P42695 1498 aa20.71■□□□□ 0.91
LGR5-202ENST00000536515 HMGXB3Q12766 1538 aa20.7■□□□□ 0.9
LGR5-202ENST00000536515 TOP2AP11388 1531 aaKnown RBP20.64■□□□□ 0.89
LGR5-202ENST00000536515 BAZ1BQ9UIG0 1483 aaKnown RBP20.64■□□□□ 0.89
LGR5-202ENST00000536515 ZEB1P37275 1124 aaPredicted RBP20.58■□□□□ 0.89
LGR5-202ENST00000536515 DNAJC5BQ9UF47 199 aa20.57■□□□□ 0.88
LGR5-202ENST00000536515 CCDC88BA6NC98 1476 aa20.46■□□□□ 0.87
LGR5-202ENST00000536515 ABCC8Q09428 1581 aa20.45■□□□□ 0.86
LGR5-202ENST00000536515 SOGA1O94964 1423 aa20.27■□□□□ 0.84
LGR5-202ENST00000536515 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.21■□□□□ 0.83
LGR5-202ENST00000536515 CEP162Q5TB80 1403 aa20.21■□□□□ 0.83
LGR5-202ENST00000536515 WRNQ14191 1432 aaPredicted RBP eCLIP20.18■□□□□ 0.822e-10■■■■■ 91.9
LGR5-202ENST00000536515 TTBK1Q5TCY1 1321 aaPredicted RBP20.18■□□□□ 0.82
LGR5-202ENST00000536515 RUSC2Q8N2Y8 1516 aa20.18■□□□□ 0.82
LGR5-202ENST00000536515 CSRNP3Q8WYN3 585 aa20.17■□□□□ 0.82
LGR5-202ENST00000536515 CCER1Q8TC90 406 aaPredicted RBP20.16■□□□□ 0.82
LGR5-202ENST00000536515 TNIKQ9UKE5 1360 aa20.16■□□□□ 0.82
LGR5-202ENST00000536515 EEA1Q15075 1411 aa20.14■□□□□ 0.81
LGR5-202ENST00000536515 CFTRP13569 1480 aa20.12■□□□□ 0.81
LGR5-202ENST00000536515 UBTFP17480 764 aaKnown RBP20.12■□□□□ 0.81
LGR5-202ENST00000536515 LAMC3Q9Y6N6 1575 aa20.11■□□□□ 0.81
LGR5-202ENST00000536515 CADPSQ9ULU8 1353 aa20.11■□□□□ 0.81
LGR5-202ENST00000536515 PRDM2Q13029 1718 aa20.09■□□□□ 0.81
LGR5-202ENST00000536515 GOLGA3Q08378 1498 aa20.03■□□□□ 0.8
LGR5-202ENST00000536515 NESP48681 1621 aa20.02■□□□□ 0.8
LGR5-202ENST00000536515 SYNJ1O43426 1573 aa19.98■□□□□ 0.79
LGR5-202ENST00000536515 PDS5BQ9NTI5 1447 aa19.91■□□□□ 0.78
LGR5-202ENST00000536515 CEP164Q9UPV0 1460 aa19.9■□□□□ 0.78
LGR5-202ENST00000536515 FANCD2Q9BXW9 1451 aa19.88■□□□□ 0.77
LGR5-202ENST00000536515 SCAF1Q9H7N4 1312 aaKnown RBP19.87■□□□□ 0.77
LGR5-202ENST00000536515 KIF21BO75037 1637 aa19.86■□□□□ 0.77
LGR5-202ENST00000536515 KIF21AQ7Z4S6 1674 aa19.86■□□□□ 0.77
LGR5-202ENST00000536515 CLIP1P30622 1438 aa19.82■□□□□ 0.76
LGR5-202ENST00000536515 DIEXFQ68CQ4 756 aaKnown RBP19.79■□□□□ 0.76
LGR5-202ENST00000536515 RAPGEF2Q9Y4G8 1499 aa19.77■□□□□ 0.76
LGR5-202ENST00000536515 ERCC6Q03468 1493 aa19.74■□□□□ 0.75
LGR5-202ENST00000536515 RANGAP1P46060 587 aaPredicted RBP19.73■□□□□ 0.75
LGR5-202ENST00000536515 VPS8Q8N3P4 1428 aa19.73■□□□□ 0.75
LGR5-202ENST00000536515 HNRNPUL2Q1KMD3 747 aaKnown RBP19.72■□□□□ 0.75
LGR5-202ENST00000536515 TOP2BQ02880 1626 aa19.71■□□□□ 0.75
LGR5-202ENST00000536515 MRC2Q9UBG0 1479 aa19.69■□□□□ 0.74
LGR5-202ENST00000536515 THOC2Q8NI27 1593 aaKnown RBP19.69■□□□□ 0.74
LGR5-202ENST00000536515 BIVM-ERCC5R4GMW8 1640 aa19.68■□□□□ 0.74
LGR5-202ENST00000536515 DNMBPQ6XZF7 1577 aa19.68■□□□□ 0.74
LGR5-202ENST00000536515 APLP2Q06481 763 aa19.68■□□□□ 0.74
LGR5-202ENST00000536515 CUX1P39880 1505 aa19.67■□□□□ 0.74
LGR5-202ENST00000536515 URB2Q14146 1524 aaKnown RBP19.66■□□□□ 0.74
LGR5-202ENST00000536515 ACIN1Q9UKV3 1341 aaKnown RBP19.66■□□□□ 0.74
LGR5-202ENST00000536515 WDR62O43379 1518 aa19.65■□□□□ 0.74
LGR5-202ENST00000536515 NEUROD1Q13562 356 aa19.64■□□□□ 0.73
LGR5-202ENST00000536515 TOPBP1Q92547 1522 aa19.63■□□□□ 0.73
LGR5-202ENST00000536515 ZNF316A6NFI3 1004 aaPredicted RBP19.62■□□□□ 0.73
LGR5-202ENST00000536515 PRXQ9BXM0 1461 aa19.55■□□□□ 0.72
LGR5-202ENST00000536515 CENPBP07199 599 aaPredicted RBP19.54■□□□□ 0.72
LGR5-202ENST00000536515 ERICH3Q5RHP9 1530 aa19.53■□□□□ 0.72
LGR5-202ENST00000536515 FGD5Q6ZNL6 1462 aa19.52■□□□□ 0.71
LGR5-202ENST00000536515 POLA1P09884 1462 aaPredicted RBP19.5■□□□□ 0.71
LGR5-202ENST00000536515 ARAP1Q96P48 1450 aa19.48■□□□□ 0.71
LGR5-202ENST00000536515 PELP1Q8IZL8 1130 aaKnown RBP19.47■□□□□ 0.71
LGR5-202ENST00000536515 KIF27Q86VH2 1401 aa19.46■□□□□ 0.71
LGR5-202ENST00000536515 GTF3C3Q9Y5Q9 886 aa19.45■□□□□ 0.7
LGR5-202ENST00000536515 CUX2O14529 1486 aa19.43■□□□□ 0.7
LGR5-202ENST00000536515 KANK4Q5T7N3 995 aaPredicted RBP19.42■□□□□ 0.7
LGR5-202ENST00000536515 WDR97A6NE52 1622 aa19.41■□□□□ 0.7
LGR5-202ENST00000536515 TARBP1Q13395 1621 aaKnown RBP19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms