RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 DCAF8L2P0C7V8 631 aa16.27■□□□□ 0.2
CUX1-203ENST00000360264 PELP1Q8IZL8 1130 aaKnown RBP15.66■□□□□ 0.1
CUX1-203ENST00000360264 FAM9AQ8IZU1 332 aaPredicted RBP15.32■□□□□ 0.04
CUX1-203ENST00000360264 SUPT5HO00267 1087 aaKnown RBP15.25■□□□□ 0.03
CUX1-203ENST00000360264 APLP2Q06481 763 aa15.21■□□□□ 0.03
CUX1-203ENST00000360264 NISCHQ9Y2I1 1504 aa15.01□□□□□ -0.01
CUX1-203ENST00000360264 CCER1Q8TC90 406 aaPredicted RBP14.89□□□□□ -0.03
CUX1-203ENST00000360264 SHROOM4Q9ULL8 1493 aa14.83□□□□□ -0.03
CUX1-203ENST00000360264 ERICH6Q7L0X2 663 aa14.74□□□□□ -0.05
CUX1-203ENST00000360264 EHMT2Q96KQ7 1210 aa14.72□□□□□ -0.05
CUX1-203ENST00000360264 CENPBP07199 599 aaPredicted RBP14.64□□□□□ -0.07
CUX1-203ENST00000360264 ZEB1P37275 1124 aaPredicted RBP14.64□□□□□ -0.07
CUX1-203ENST00000360264 NEFLP07196 543 aa14.48□□□□□ -0.09
CUX1-203ENST00000360264 MYT1Q01538 1121 aa14.46□□□□□ -0.1
CUX1-203ENST00000360264 PCGF6Q9BYE7 350 aa14.42□□□□□ -0.1
CUX1-203ENST00000360264 ATP1B4Q9UN42 357 aaPredicted RBP14.39□□□□□ -0.11
CUX1-203ENST00000360264 TTBK1Q5TCY1 1321 aaPredicted RBP14.32□□□□□ -0.12
CUX1-203ENST00000360264 TRIM41Q8WV44 630 aa14.31□□□□□ -0.12
CUX1-203ENST00000360264 UBTFP17480 764 aaKnown RBP14.31□□□□□ -0.12
CUX1-203ENST00000360264 DAXXQ9UER7 740 aaPredicted RBP14.28□□□□□ -0.12
CUX1-203ENST00000360264 YTHDC1Q96MU7 727 aaKnown RBP14.27□□□□□ -0.12
CUX1-203ENST00000360264 RANGAP1P46060 587 aaPredicted RBP14.26□□□□□ -0.13
CUX1-203ENST00000360264 MYT1LQ9UL68 1186 aa14.05□□□□□ -0.16
CUX1-203ENST00000360264 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.95□□□□□ -0.18
CUX1-203ENST00000360264 HNRNPUL2Q1KMD3 747 aaKnown RBP13.95□□□□□ -0.18
CUX1-203ENST00000360264 ZNF316A6NFI3 1004 aaPredicted RBP13.87□□□□□ -0.19
CUX1-203ENST00000360264 TRIM26Q12899 539 aaPredicted RBP13.85□□□□□ -0.19
CUX1-203ENST00000360264 POLR3GLQ9BT43 218 aa13.83□□□□□ -0.19
CUX1-203ENST00000360264 RTL5Q5HYW3 569 aaPredicted RBP13.82□□□□□ -0.2
CUX1-203ENST00000360264 SLC4A1APQ9BWU0 796 aaKnown RBP13.78□□□□□ -0.2
CUX1-203ENST00000360264 CLSPNQ9HAW4 1339 aa13.74□□□□□ -0.21
CUX1-203ENST00000360264 ITGAEP38570 1179 aa13.72□□□□□ -0.21
CUX1-203ENST00000360264 ZBTB47Q9UFB7 747 aaPredicted RBP13.69□□□□□ -0.22
CUX1-203ENST00000360264 CHIC1Q5VXU3 224 aa13.64□□□□□ -0.23
CUX1-203ENST00000360264 HRCP23327 699 aa13.59□□□□□ -0.23
CUX1-203ENST00000360264 NEFMP07197 916 aa13.57□□□□□ -0.24
CUX1-203ENST00000360264 PPARGC1BQ86YN6 1023 aaKnown RBP13.57□□□□□ -0.24
CUX1-203ENST00000360264 ANP32CO43423 234 aa13.47□□□□□ -0.25
CUX1-203ENST00000360264 TRIM52Q96A61 297 aa13.47□□□□□ -0.25
CUX1-203ENST00000360264 FAM50AQ14320 339 aaKnown RBP13.45□□□□□ -0.26
CUX1-203ENST00000360264 CNGB1Q14028 1251 aaPredicted RBP13.45□□□□□ -0.26
CUX1-203ENST00000360264 CANXP27824 592 aaKnown RBP13.4□□□□□ -0.26
CUX1-203ENST00000360264 DIEXFQ68CQ4 756 aaKnown RBP13.38□□□□□ -0.27
CUX1-203ENST00000360264 CDK11AQ9UQ88 783 aaPredicted RBP13.36□□□□□ -0.27
CUX1-203ENST00000360264 ANP32BQ92688 251 aaKnown RBP13.36□□□□□ -0.27
CUX1-203ENST00000360264 BCANQ96GW7 911 aa13.33□□□□□ -0.28
CUX1-203ENST00000360264 SLC24A1O60721 1099 aa13.32□□□□□ -0.28
CUX1-203ENST00000360264 ESF1Q9H501 851 aaKnown RBP13.3□□□□□ -0.28
CUX1-203ENST00000360264 NEUROD1Q13562 356 aa13.29□□□□□ -0.28
CUX1-203ENST00000360264 LOC105371045A0A1W2PR82 267 aa13.25□□□□□ -0.29
CUX1-203ENST00000360264 ANP32AP39687 249 aaKnown RBP13.25□□□□□ -0.29
CUX1-203ENST00000360264 ZNF326Q5BKZ1 582 aaKnown RBP13.25□□□□□ -0.29
CUX1-203ENST00000360264 HSP90AA1P07900 732 aaKnown RBP13.22□□□□□ -0.29
CUX1-203ENST00000360264 FBLN2P98095 1184 aa13.22□□□□□ -0.29
CUX1-203ENST00000360264 UPF2Q9HAU5 1272 aaKnown RBP13.17□□□□□ -0.3
CUX1-203ENST00000360264 STAG3Q9UJ98 1225 aa13.16□□□□□ -0.3
CUX1-203ENST00000360264 PABPN1Q86U42 306 aaKnown RBP eCLIP13.09□□□□□ -0.31
CUX1-203ENST00000360264 BCL11AQ9H165 835 aa13.07□□□□□ -0.32
CUX1-203ENST00000360264 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.06□□□□□ -0.32
CUX1-203ENST00000360264 CDK11BP21127 795 aaKnown RBP13.04□□□□□ -0.32
CUX1-203ENST00000360264 NPM1P06748 294 aaKnown RBP eCLIP13.02□□□□□ -0.33
CUX1-203ENST00000360264 ZNF777Q9ULD5 760 aaPredicted RBP13.01□□□□□ -0.33
CUX1-203ENST00000360264 ACIN1Q9UKV3 1341 aaKnown RBP13□□□□□ -0.33
CUX1-203ENST00000360264 ABCC9O60706 1549 aa12.99□□□□□ -0.33
CUX1-203ENST00000360264 MYH16Q9H6N6 1097 aa12.99□□□□□ -0.33
CUX1-203ENST00000360264 GTF3C3Q9Y5Q9 886 aa12.98□□□□□ -0.33
CUX1-203ENST00000360264 NPM2Q86SE8 214 aaKnown RBP12.97□□□□□ -0.33
CUX1-203ENST00000360264 GLIPR1L2Q4G1C9 344 aa12.96□□□□□ -0.33
CUX1-203ENST00000360264 TONSLQ96HA7 1378 aa12.96□□□□□ -0.34
CUX1-203ENST00000360264 EIF5BO60841 1220 aaKnown RBP12.95□□□□□ -0.34
CUX1-203ENST00000360264 CSRNP3Q8WYN3 585 aa12.94□□□□□ -0.34
CUX1-203ENST00000360264 CHGAP10645 457 aaKnown RBP12.93□□□□□ -0.34
CUX1-203ENST00000360264 ANP32EQ9BTT0 268 aa12.93□□□□□ -0.34
CUX1-203ENST00000360264 WDR43Q15061 677 aaKnown RBP eCLIP12.88□□□□□ -0.35
CUX1-203ENST00000360264 P3H3Q8IVL6 736 aa12.87□□□□□ -0.35
CUX1-203ENST00000360264 ARID3CA6NKF2 412 aa12.86□□□□□ -0.35
CUX1-203ENST00000360264 TMC1Q8TDI8 760 aa12.84□□□□□ -0.35
CUX1-203ENST00000360264 GOLGA6L22H0YM25 854 aa12.84□□□□□ -0.35
CUX1-203ENST00000360264 CCDC136Q96JN2 1154 aa12.84□□□□□ -0.35
CUX1-203ENST00000360264 TSPY4P0CV99 314 aa12.83□□□□□ -0.36
CUX1-203ENST00000360264 TSPY10P0CW01 314 aa12.83□□□□□ -0.36
CUX1-203ENST00000360264 BECN1Q14457 450 aa12.82□□□□□ -0.36
CUX1-203ENST00000360264 NCLP19338 710 aaKnown RBP12.81□□□□□ -0.36
CUX1-203ENST00000360264 CDCA8Q53HL2 280 aa12.79□□□□□ -0.36
CUX1-203ENST00000360264 SCAF1Q9H7N4 1312 aaKnown RBP12.78□□□□□ -0.36
CUX1-203ENST00000360264 HNRNPUQ00839 825 aaKnown RBP eCLIP12.78□□□□□ -0.361e-6■■■■□ 21.8
CUX1-203ENST00000360264 DDRGK1Q96HY6 314 aa12.78□□□□□ -0.36
CUX1-203ENST00000360264 CASC1Q6TDU7 716 aa12.77□□□□□ -0.37
CUX1-203ENST00000360264 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.76□□□□□ -0.371e-6■■□□□ 13.7
CUX1-203ENST00000360264 PLPPR3Q6T4P5 718 aa12.75□□□□□ -0.37
CUX1-203ENST00000360264 C14orf37Q86TY3 774 aa12.75□□□□□ -0.37
CUX1-203ENST00000360264 ZRSR1Q15695 479 aaKnown RBP12.74□□□□□ -0.37
CUX1-203ENST00000360264 A0A0G2JS52 829 aa12.73□□□□□ -0.37
CUX1-203ENST00000360264 CHMP4BQ9H444 224 aaKnown RBP12.72□□□□□ -0.37
CUX1-203ENST00000360264 FAM9BQ8IZU0 186 aa12.71□□□□□ -0.37
CUX1-203ENST00000360264 CHMP7Q8WUX9 453 aaPredicted RBP12.71□□□□□ -0.37
CUX1-203ENST00000360264 MRS2Q9HD23 443 aa12.71□□□□□ -0.38
CUX1-203ENST00000360264 FKBP8Q14318 412 aa12.7□□□□□ -0.38
CUX1-203ENST00000360264 PPP1R15AO75807 674 aaPredicted RBP12.69□□□□□ -0.38
CUX1-203ENST00000360264 TNNT2P45379 298 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms