RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 NISCHQ9Y2I1 1504 aa23.82■■□□□ 1.4
CUX1-212ENST00000547394 SHROOM4Q9ULL8 1493 aa20.39■□□□□ 0.85
CUX1-212ENST00000547394 DCAF8L2P0C7V8 631 aa20.26■□□□□ 0.83
CUX1-212ENST00000547394 CCDC180Q9P1Z9 1646 aa20.25■□□□□ 0.83
CUX1-212ENST00000547394 ZCCHC6Q5VYS8 1495 aaKnown RBP20.04■□□□□ 0.8
CUX1-212ENST00000547394 SUPT5HO00267 1087 aaKnown RBP19.79■□□□□ 0.76
CUX1-212ENST00000547394 ABCC9O60706 1549 aa19.45■□□□□ 0.7
CUX1-212ENST00000547394 DCAF1Q9Y4B6 1507 aa19.37■□□□□ 0.69
CUX1-212ENST00000547394 SCRIBQ14160 1630 aa19.2■□□□□ 0.66
CUX1-212ENST00000547394 CHIC1Q5VXU3 224 aa18.91■□□□□ 0.62
CUX1-212ENST00000547394 MYO15BQ96JP2 1530 aa18.9■□□□□ 0.62
CUX1-212ENST00000547394 NACADO15069 1562 aa18.88■□□□□ 0.61
CUX1-212ENST00000547394 RSF1Q96T23 1441 aaPredicted RBP18.77■□□□□ 0.6
CUX1-212ENST00000547394 CECR2Q9BXF3 1484 aa18.75■□□□□ 0.59
CUX1-212ENST00000547394 RB1CC1Q8TDY2 1594 aa18.7■□□□□ 0.58
CUX1-212ENST00000547394 PABPN1Q86U42 306 aaKnown RBP eCLIP18.63■□□□□ 0.57
CUX1-212ENST00000547394 MROH2BQ7Z745 1585 aa18.59■□□□□ 0.57
CUX1-212ENST00000547394 LOC105371045A0A1W2PR82 267 aa18.48■□□□□ 0.55
CUX1-212ENST00000547394 WIZO95785 1651 aa18.46■□□□□ 0.55
CUX1-212ENST00000547394 UNC13AQ9UPW8 1703 aa18.43■□□□□ 0.54
CUX1-212ENST00000547394 EHMT2Q96KQ7 1210 aa18.37■□□□□ 0.53
CUX1-212ENST00000547394 FAM9AQ8IZU1 332 aaPredicted RBP18.37■□□□□ 0.53
CUX1-212ENST00000547394 TRIM41Q8WV44 630 aa18.34■□□□□ 0.53
CUX1-212ENST00000547394 BAZ1AQ9NRL2 1556 aaPredicted RBP18.28■□□□□ 0.52
CUX1-212ENST00000547394 BICRAQ9NZM4 1560 aa18.26■□□□□ 0.51
CUX1-212ENST00000547394 SMARCA4P51532 1647 aa18.21■□□□□ 0.5
CUX1-212ENST00000547394 CCDC88BA6NC98 1476 aa18.07■□□□□ 0.48
CUX1-212ENST00000547394 TOP2AP11388 1531 aaKnown RBP18.05■□□□□ 0.48
CUX1-212ENST00000547394 PCGF6Q9BYE7 350 aa18.05■□□□□ 0.48
CUX1-212ENST00000547394 SMARCA2P51531 1590 aa17.99■□□□□ 0.47
CUX1-212ENST00000547394 ABCC8Q09428 1581 aa17.99■□□□□ 0.47
CUX1-212ENST00000547394 EIF4G1Q04637 1599 aaKnown RBP17.9■□□□□ 0.46
CUX1-212ENST00000547394 ATAD2BQ9ULI0 1458 aa17.88■□□□□ 0.45
CUX1-212ENST00000547394 BAZ1BQ9UIG0 1483 aaKnown RBP17.83■□□□□ 0.44
CUX1-212ENST00000547394 PPARGC1BQ86YN6 1023 aaKnown RBP17.81■□□□□ 0.44
CUX1-212ENST00000547394 PEG3Q9GZU2 1588 aa17.76■□□□□ 0.43
CUX1-212ENST00000547394 SOGA1O94964 1423 aa17.75■□□□□ 0.43
CUX1-212ENST00000547394 RUSC2Q8N2Y8 1516 aa17.71■□□□□ 0.43
CUX1-212ENST00000547394 WRNQ14191 1432 aaPredicted RBP eCLIP17.65■□□□□ 0.422e-6■■■■■ 54.1
CUX1-212ENST00000547394 TTBK1Q5TCY1 1321 aaPredicted RBP17.64■□□□□ 0.41
CUX1-212ENST00000547394 HRCP23327 699 aa17.62■□□□□ 0.41
CUX1-212ENST00000547394 TRIM26Q12899 539 aaPredicted RBP17.62■□□□□ 0.41
CUX1-212ENST00000547394 UBTFP17480 764 aaKnown RBP17.58■□□□□ 0.4
CUX1-212ENST00000547394 SYNJ1O43426 1573 aa17.57■□□□□ 0.4
CUX1-212ENST00000547394 CSRNP3Q8WYN3 585 aa17.57■□□□□ 0.4
CUX1-212ENST00000547394 RANGAP1P46060 587 aaPredicted RBP17.54■□□□□ 0.4
CUX1-212ENST00000547394 NCAPD3P42695 1498 aa17.53■□□□□ 0.4
CUX1-212ENST00000547394 HMGXB3Q12766 1538 aa17.44■□□□□ 0.38
CUX1-212ENST00000547394 CEP162Q5TB80 1403 aa17.42■□□□□ 0.38
CUX1-212ENST00000547394 CC2D2AQ9P2K1 1620 aa17.38■□□□□ 0.37
CUX1-212ENST00000547394 DNAJC5BQ9UF47 199 aa17.36■□□□□ 0.37
CUX1-212ENST00000547394 TNIKQ9UKE5 1360 aa17.34■□□□□ 0.37
CUX1-212ENST00000547394 EEA1Q15075 1411 aa17.34■□□□□ 0.37
CUX1-212ENST00000547394 GOLGA3Q08378 1498 aa17.32■□□□□ 0.36
CUX1-212ENST00000547394 CFTRP13569 1480 aa17.31■□□□□ 0.36
CUX1-212ENST00000547394 CUX1P39880 1505 aa17.3■□□□□ 0.36
CUX1-212ENST00000547394 RAPGEF2Q9Y4G8 1499 aa17.3■□□□□ 0.36
CUX1-212ENST00000547394 TOP2BQ02880 1626 aa17.29■□□□□ 0.36
CUX1-212ENST00000547394 CEP164Q9UPV0 1460 aa17.24■□□□□ 0.35
CUX1-212ENST00000547394 CADPSQ9ULU8 1353 aa17.24■□□□□ 0.35
CUX1-212ENST00000547394 NESP48681 1621 aa17.21■□□□□ 0.35
CUX1-212ENST00000547394 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.19■□□□□ 0.34
CUX1-212ENST00000547394 BIVM-ERCC5R4GMW8 1640 aa17.19■□□□□ 0.34
CUX1-212ENST00000547394 CLIP1P30622 1438 aa17.18■□□□□ 0.34
CUX1-212ENST00000547394 KIF21BO75037 1637 aa17.14■□□□□ 0.34
CUX1-212ENST00000547394 KIF27Q86VH2 1401 aa17.11■□□□□ 0.33
CUX1-212ENST00000547394 CUX2O14529 1486 aa17.1■□□□□ 0.33
CUX1-212ENST00000547394 FANCD2Q9BXW9 1451 aa17.1■□□□□ 0.33
CUX1-212ENST00000547394 FGD5Q6ZNL6 1462 aa17.07■□□□□ 0.32
CUX1-212ENST00000547394 PRXQ9BXM0 1461 aa17.06■□□□□ 0.32
CUX1-212ENST00000547394 CCER1Q8TC90 406 aaPredicted RBP17.04■□□□□ 0.32
CUX1-212ENST00000547394 RAD54L2Q9Y4B4 1467 aa17.03■□□□□ 0.32
CUX1-212ENST00000547394 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.32
CUX1-212ENST00000547394 APLP2Q06481 763 aa17.02■□□□□ 0.31
CUX1-212ENST00000547394 IGF1RP08069 1367 aa17■□□□□ 0.31
CUX1-212ENST00000547394 VPS8Q8N3P4 1428 aa16.99■□□□□ 0.31
CUX1-212ENST00000547394 PRDM2Q13029 1718 aa16.98■□□□□ 0.31
CUX1-212ENST00000547394 P3H3Q8IVL6 736 aa16.96■□□□□ 0.31
CUX1-212ENST00000547394 ARAP1Q96P48 1450 aa16.93■□□□□ 0.3
CUX1-212ENST00000547394 CARMIL1Q5VZK9 1371 aa16.93■□□□□ 0.3
CUX1-212ENST00000547394 KANK4Q5T7N3 995 aaPredicted RBP16.93■□□□□ 0.3
CUX1-212ENST00000547394 ERICH3Q5RHP9 1530 aa16.93■□□□□ 0.3
CUX1-212ENST00000547394 ZEB1P37275 1124 aaPredicted RBP16.92■□□□□ 0.3
CUX1-212ENST00000547394 TOPBP1Q92547 1522 aa16.92■□□□□ 0.3
CUX1-212ENST00000547394 POLA1P09884 1462 aaPredicted RBP16.91■□□□□ 0.3
CUX1-212ENST00000547394 TDRD9Q8NDG6 1382 aaKnown RBP16.89■□□□□ 0.29
CUX1-212ENST00000547394 URB2Q14146 1524 aaKnown RBP16.88■□□□□ 0.29
CUX1-212ENST00000547394 ATP1B4Q9UN42 357 aaPredicted RBP16.87■□□□□ 0.29
CUX1-212ENST00000547394 DNMBPQ6XZF7 1577 aa16.86■□□□□ 0.29
CUX1-212ENST00000547394 ARHGAP35Q9NRY4 1499 aa16.85■□□□□ 0.29
CUX1-212ENST00000547394 LAMC3Q9Y6N6 1575 aa16.8■□□□□ 0.28
CUX1-212ENST00000547394 PDS5BQ9NTI5 1447 aa16.79■□□□□ 0.28
CUX1-212ENST00000547394 ITGAEP38570 1179 aa16.79■□□□□ 0.28
CUX1-212ENST00000547394 KIF21AQ7Z4S6 1674 aa16.77■□□□□ 0.28
CUX1-212ENST00000547394 ABCA10Q8WWZ4 1543 aa16.77■□□□□ 0.28
CUX1-212ENST00000547394 FHOD3Q2V2M9 1422 aa16.71■□□□□ 0.27
CUX1-212ENST00000547394 GAPVD1Q14C86 1478 aa16.67■□□□□ 0.26
CUX1-212ENST00000547394 AQRO60306 1485 aaKnown RBP eCLIP16.67■□□□□ 0.264e-7■■■■□ 26.1
CUX1-212ENST00000547394 ARID3CA6NKF2 412 aa16.61■□□□□ 0.25
CUX1-212ENST00000547394 WDR97A6NE52 1622 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms