Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC13.04□□□□□ -0.328e-10■■□□□ 13.3
SMNDC1O75940 PTOV1-202ENST00000594151 995 ntTSL 512.67□□□□□ -0.388e-10■■□□□ 13.3
SMNDC1O75940 CAPRIN1-202ENST00000389645 3498 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.431e-7■■□□□ 13.3
SMNDC1O75940 POLR3E-218ENST00000569787 727 ntTSL 312.25□□□□□ -0.451e-7■■□□□ 13.3
SMNDC1O75940 EMC8-203ENST00000595980 556 ntTSL 211.44□□□□□ -0.581e-7■■□□□ 13.3
SMNDC1O75940 PTOV1-215ENST00000600793 426 ntTSL 511.25□□□□□ -0.618e-10■■□□□ 13.3
SMNDC1O75940 CAPRIN1-201ENST00000341394 4108 ntAPPRIS P4 TSL 1 (best) BASIC10.86□□□□□ -0.671e-7■■□□□ 13.3
SMNDC1O75940 PKP4-206ENST00000452162 2359 ntTSL 1 (best)10.47□□□□□ -0.732e-7■■□□□ 13.3
SMNDC1O75940 MDM2-220ENST00000496959 897 ntTSL 1 (best)10.38□□□□□ -0.751e-7■■□□□ 13.3
SMNDC1O75940 PKP4-201ENST00000389757 5777 ntAPPRIS ALT1 TSL 1 (best) BASIC10.19□□□□□ -0.782e-7■■□□□ 13.3
SMNDC1O75940 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC9.91□□□□□ -0.821e-7■■□□□ 13.3
SMNDC1O75940 CKAP5-206ENST00000526876 570 ntTSL 59.89□□□□□ -0.831e-7■■□□□ 13.3
SMNDC1O75940 MDM2-204ENST00000311420 1583 ntTSL 59.69□□□□□ -0.861e-7■■□□□ 13.3
SMNDC1O75940 CKAP5-208ENST00000527333 498 ntTSL 59.43□□□□□ -0.91e-7■■□□□ 13.3
SMNDC1O75940 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC8.93□□□□□ -0.982e-7■■□□□ 13.3
SMNDC1O75940 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC8.88□□□□□ -0.991e-7■■□□□ 13.3
SMNDC1O75940 MDM2-230ENST00000543323 427 ntTSL 1 (best)8.1□□□□□ -1.111e-7■■□□□ 13.3
SMNDC1O75940 MDM2-228ENST00000542502 1127 ntTSL 1 (best)7.93□□□□□ -1.141e-7■■□□□ 13.3
SMNDC1O75940 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.151e-7■■□□□ 13.3
SMNDC1O75940 MDM2-222ENST00000523991 505 ntTSL 1 (best)7.87□□□□□ -1.151e-7■■□□□ 13.3
SMNDC1O75940 EMC8-206ENST00000600807 851 ntTSL 27.59□□□□□ -1.191e-7■■□□□ 13.3
SMNDC1O75940 PKP4-217ENST00000628904 3856 ntTSL 5 BASIC7.52□□□□□ -1.22e-7■■□□□ 13.3
SMNDC1O75940 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC7.07□□□□□ -1.281e-7■■□□□ 13.3
SMNDC1O75940 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC7□□□□□ -1.291e-7■■□□□ 13.3
SMNDC1O75940 MDM2-213ENST00000393417 1683 ntTSL 56.87□□□□□ -1.311e-7■■□□□ 13.3
SMNDC1O75940 MDM2-224ENST00000537182 1011 ntTSL 1 (best)6.66□□□□□ -1.341e-7■■□□□ 13.3
SMNDC1O75940 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC6.56□□□□□ -1.361e-7■■□□□ 13.3
SMNDC1O75940 HMGN2-209ENST00000493418 1496 ntTSL 26.5□□□□□ -1.371e-42■■□□□ 13.3
SMNDC1O75940 MDM2-226ENST00000540352 1315 ntTSL 1 (best)6.5□□□□□ -1.371e-7■■□□□ 13.3
SMNDC1O75940 MDM2-223ENST00000536089 1181 ntTSL 1 (best)6.28□□□□□ -1.41e-7■■□□□ 13.3
SMNDC1O75940 MDM2-218ENST00000481186 1056 ntTSL 56.28□□□□□ -1.41e-7■■□□□ 13.3
SMNDC1O75940 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC6.14□□□□□ -1.431e-7■■□□□ 13.3
SMNDC1O75940 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC5.7□□□□□ -1.51e-7■■□□□ 13.3
SMNDC1O75940 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC5.7□□□□□ -1.51e-7■■□□□ 13.3
SMNDC1O75940 MDM2-233ENST00000545204 398 ntTSL 5 BASIC5.7□□□□□ -1.51e-7■■□□□ 13.3
SMNDC1O75940 MDM2-211ENST00000393415 842 ntTSL 55.44□□□□□ -1.541e-7■■□□□ 13.3
SMNDC1O75940 KIAA0100-212ENST00000581267 449 ntTSL 35.36□□□□□ -1.551e-7■■□□□ 13.3
SMNDC1O75940 MDM2-234ENST00000546048 363 ntTSL 55.24□□□□□ -1.571e-7■■□□□ 13.3
SMNDC1O75940 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC5.19□□□□□ -1.581e-7■■□□□ 13.3
SMNDC1O75940 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC4.75□□□□□ -1.651e-7■■□□□ 13.3
SMNDC1O75940 MDM2-232ENST00000544561 213 ntTSL 5 BASIC4.63□□□□□ -1.671e-7■■□□□ 13.3
SMNDC1O75940 HSP90AB1-203ENST00000371646 2572 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.653e-7■■□□□ 13.3
SMNDC1O75940 HSP90AB1-202ENST00000371554 2674 ntAPPRIS P1 TSL 5 BASIC9.56□□□□□ -0.883e-7■■□□□ 13.3
SMNDC1O75940 HSP90AB1-204ENST00000620073 2644 ntAPPRIS P1 TSL 5 BASIC9.35□□□□□ -0.913e-7■■□□□ 13.3
SMNDC1O75940 HSP90AB1-201ENST00000353801 2582 ntAPPRIS P1 TSL 1 (best) BASIC9□□□□□ -0.973e-7■■□□□ 13.3
SMNDC1O75940 HNRNPU-228ENST00000640306 2917 ntTSL 517.31■□□□□ 0.362e-9■■□□□ 13.3
SMNDC1O75940 AP4B1-209ENST00000472122 583 ntTSL 39.37□□□□□ -0.911e-8■■□□□ 13.3
SMNDC1O75940 DDX39A-209ENST00000589318 1903 ntTSL 1 (best)16.02■□□□□ 0.167e-7■■□□□ 13.3
SMNDC1O75940 DDX39A-202ENST00000324340 1355 ntTSL 1 (best)13.04□□□□□ -0.327e-7■■□□□ 13.3
SMNDC1O75940 DDX39A-208ENST00000588692 1478 ntTSL 512.97□□□□□ -0.337e-7■■□□□ 13.3
SMNDC1O75940 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.47e-7■■□□□ 13.3
SMNDC1O75940 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC22.17■■□□□ 1.142e-6■■□□□ 13.3
SMNDC1O75940 EWSR1-215ENST00000469669 2630 ntTSL 218.23■□□□□ 0.516e-11■■□□□ 13.3
SMNDC1O75940 EWSR1-205ENST00000360091 1289 ntTSL 517.66■□□□□ 0.426e-11■■□□□ 13.3
SMNDC1O75940 EWSR1-218ENST00000483629 1818 ntTSL 517.28■□□□□ 0.366e-11■■□□□ 13.3
SMNDC1O75940 MED15-222ENST00000473244 2733 ntTSL 1 (best)21.1■□□□□ 0.979e-8■■□□□ 13.3
SMNDC1O75940 MED15-231ENST00000493216 4701 ntTSL 217.02■□□□□ 0.319e-8■■□□□ 13.3
SMNDC1O75940 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.141e-6■■□□□ 13.3
SMNDC1O75940 MAP4-201ENST00000335271 1564 ntAPPRIS ALT2 TSL 213.57□□□□□ -0.241e-6■■□□□ 13.3
SMNDC1O75940 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.271e-6■■□□□ 13.3
SMNDC1O75940 MAP4-208ENST00000429422 3724 ntTSL 1 (best)11.08□□□□□ -0.641e-6■■□□□ 13.3
SMNDC1O75940 HSPA5-201ENST00000324460 3908 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.658e-9■■□□□ 13.3
SMNDC1O75940 MAP4-205ENST00000420772 3478 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.731e-6■■□□□ 13.3
SMNDC1O75940 MAP4-207ENST00000426837 8920 ntAPPRIS ALT2 TSL 5 BASIC9.88□□□□□ -0.831e-6■■□□□ 13.3
SMNDC1O75940 PLXNA3-201ENST00000369682 10885 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.452e-6■■□□□ 13.3
SMNDC1O75940 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC23.52■■□□□ 1.367e-7■■□□□ 13.2
SMNDC1O75940 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC22.53■■□□□ 1.27e-7■■□□□ 13.2
SMNDC1O75940 UBALD1-204ENST00000588691 281 ntTSL 321.36■■□□□ 1.017e-7■■□□□ 13.2
SMNDC1O75940 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.87■□□□□ 0.937e-7■■□□□ 13.2
SMNDC1O75940 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.847e-7■■□□□ 13.2
SMNDC1O75940 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.45■□□□□ 0.77e-7■■□□□ 13.2
SMNDC1O75940 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.72■□□□□ 0.437e-7■■□□□ 13.2
SMNDC1O75940 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.46■□□□□ 0.871e-6■■□□□ 13.2
SMNDC1O75940 SNHG14-218ENST00000553108 2208 ntTSL 1 (best) BASIC12.4□□□□□ -0.422e-7■■□□□ 13.2
SMNDC1O75940 SNHG14-210ENST00000546682 8842 ntTSL 5 BASIC10.22□□□□□ -0.772e-7■■□□□ 13.2
SMNDC1O75940 ASPSCR1-218ENST00000583744 539 ntTSL 413.89□□□□□ -0.192e-7■■□□□ 13.2
SMNDC1O75940 ASPSCR1-206ENST00000578361 590 ntTSL 213.53□□□□□ -0.242e-7■■□□□ 13.2
SMNDC1O75940 UNC13D-216ENST00000591616 659 ntTSL 315.17■□□□□ 0.027e-7■■□□□ 13.2
SMNDC1O75940 MAN2A2-206ENST00000558290 1049 ntTSL 515.67■□□□□ 0.11e-6■■□□□ 13.2
SMNDC1O75940 MAN2A2-223ENST00000560534 361 ntTSL 514.76□□□□□ -0.051e-6■■□□□ 13.2
SMNDC1O75940 MAN2A2-210ENST00000558853 624 ntTSL 314.29□□□□□ -0.121e-6■■□□□ 13.2
SMNDC1O75940 MAN2A2-218ENST00000559999 529 ntTSL 413.38□□□□□ -0.271e-6■■□□□ 13.2
SMNDC1O75940 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.72■■□□□ 1.551e-6■■□□□ 13.2
SMNDC1O75940 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.51e-6■■□□□ 13.2
SMNDC1O75940 PICALM-215ENST00000531558 565 ntTSL 523.04■■□□□ 1.281e-6■■□□□ 13.2
SMNDC1O75940 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.11e-6■■□□□ 13.2
SMNDC1O75940 PICALM-218ENST00000532041 699 ntTSL 320.86■□□□□ 0.931e-6■■□□□ 13.2
SMNDC1O75940 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.851e-6■■□□□ 13.2
SMNDC1O75940 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.821e-6■■□□□ 13.2
SMNDC1O75940 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.81e-6■■□□□ 13.2
SMNDC1O75940 PRMT1-204ENST00000525616 780 ntTSL 219.73■□□□□ 0.751e-9■■□□□ 13.2
SMNDC1O75940 BSDC1-208ENST00000474414 978 ntTSL 519.47■□□□□ 0.711e-6■■□□□ 13.2
SMNDC1O75940 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.91■□□□□ 0.621e-9■■□□□ 13.2
SMNDC1O75940 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.68■□□□□ 0.581e-6■■□□□ 13.2
SMNDC1O75940 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.491e-6■■□□□ 13.2
SMNDC1O75940 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.481e-6■■□□□ 13.2
SMNDC1O75940 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.05■□□□□ 0.481e-6■■□□□ 13.2
SMNDC1O75940 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.05■□□□□ 0.481e-6■■□□□ 13.2
SMNDC1O75940 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.67■□□□□ 0.421e-6■■□□□ 13.2
SMNDC1O75940 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.361e-6■■□□□ 13.2
Retrieved 100 of 11,362 protein–RNA pairs in 169.1 ms