RNA–Protein interactions for RNA: ENST00000628904.2

PKP4-217, Transcript of plakophilin 4, humanhuman

TSL 5 BASIC

Gene PKP4, Length 3,856 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-217ENST00000628904 NISCHQ9Y2I1 1504 aa14.79□□□□□ -0.04
PKP4-217ENST00000628904 DCAF8L2P0C7V8 631 aa13.9□□□□□ -0.18
PKP4-217ENST00000628904 SHROOM4Q9ULL8 1493 aa13.65□□□□□ -0.22
PKP4-217ENST00000628904 SUPT5HO00267 1087 aaKnown RBP13.43□□□□□ -0.26
PKP4-217ENST00000628904 EHMT2Q96KQ7 1210 aa12.88□□□□□ -0.35
PKP4-217ENST00000628904 FAM9AQ8IZU1 332 aaPredicted RBP12.6□□□□□ -0.39
PKP4-217ENST00000628904 ABCC9O60706 1549 aa12.51□□□□□ -0.41
PKP4-217ENST00000628904 LOC105371045A0A1W2PR82 267 aa12.41□□□□□ -0.42
PKP4-217ENST00000628904 CHIC1Q5VXU3 224 aa12.39□□□□□ -0.43
PKP4-217ENST00000628904 TTBK1Q5TCY1 1321 aaPredicted RBP12.34□□□□□ -0.43
PKP4-217ENST00000628904 ZCCHC6Q5VYS8 1495 aaKnown RBP12.34□□□□□ -0.43
PKP4-217ENST00000628904 PCGF6Q9BYE7 350 aa12.34□□□□□ -0.43
PKP4-217ENST00000628904 PABPN1Q86U42 306 aaKnown RBP eCLIP12.31□□□□□ -0.447e-8■□□□□ 10
PKP4-217ENST00000628904 PPARGC1BQ86YN6 1023 aaKnown RBP12.28□□□□□ -0.44
PKP4-217ENST00000628904 TRIM41Q8WV44 630 aa12.26□□□□□ -0.45
PKP4-217ENST00000628904 RANGAP1P46060 587 aaPredicted RBP12.2□□□□□ -0.46
PKP4-217ENST00000628904 SCRIBQ14160 1630 aa12.13□□□□□ -0.47
PKP4-217ENST00000628904 CCDC180Q9P1Z9 1646 aa12.13□□□□□ -0.47
PKP4-217ENST00000628904 MYO15BQ96JP2 1530 aa12.04□□□□□ -0.48
PKP4-217ENST00000628904 UBTFP17480 764 aaKnown RBP11.91□□□□□ -0.5
PKP4-217ENST00000628904 CECR2Q9BXF3 1484 aa11.87□□□□□ -0.51
PKP4-217ENST00000628904 RSF1Q96T23 1441 aaPredicted RBP11.85□□□□□ -0.51
PKP4-217ENST00000628904 HRCP23327 699 aa11.74□□□□□ -0.53
PKP4-217ENST00000628904 TRIM26Q12899 539 aaPredicted RBP11.72□□□□□ -0.53
PKP4-217ENST00000628904 ATP1B4Q9UN42 357 aaPredicted RBP11.7□□□□□ -0.54
PKP4-217ENST00000628904 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.68□□□□□ -0.54
PKP4-217ENST00000628904 CCER1Q8TC90 406 aaPredicted RBP11.66□□□□□ -0.54
PKP4-217ENST00000628904 MROH2BQ7Z745 1585 aa11.66□□□□□ -0.54
PKP4-217ENST00000628904 DCAF1Q9Y4B6 1507 aa11.65□□□□□ -0.54
PKP4-217ENST00000628904 RB1CC1Q8TDY2 1594 aa11.64□□□□□ -0.55
PKP4-217ENST00000628904 APLP2Q06481 763 aa11.64□□□□□ -0.55
PKP4-217ENST00000628904 HNRNPUL2Q1KMD3 747 aaKnown RBP11.61□□□□□ -0.55
PKP4-217ENST00000628904 ITGAEP38570 1179 aa11.59□□□□□ -0.55
PKP4-217ENST00000628904 NACADO15069 1562 aa11.57□□□□□ -0.56
PKP4-217ENST00000628904 WIZO95785 1651 aa11.53□□□□□ -0.56
PKP4-217ENST00000628904 CSRNP3Q8WYN3 585 aa11.51□□□□□ -0.57
PKP4-217ENST00000628904 P3H3Q8IVL6 736 aa11.47□□□□□ -0.57
PKP4-217ENST00000628904 ABCC8Q09428 1581 aa11.46□□□□□ -0.57
PKP4-217ENST00000628904 SOGA1O94964 1423 aa11.43□□□□□ -0.58
PKP4-217ENST00000628904 CCDC88BA6NC98 1476 aa11.4□□□□□ -0.58
PKP4-217ENST00000628904 ARID3CA6NKF2 412 aa11.39□□□□□ -0.59
PKP4-217ENST00000628904 YTHDC1Q96MU7 727 aaKnown RBP11.37□□□□□ -0.59
PKP4-217ENST00000628904 BAZ1AQ9NRL2 1556 aaPredicted RBP11.37□□□□□ -0.59
PKP4-217ENST00000628904 RUSC2Q8N2Y8 1516 aa11.34□□□□□ -0.59
PKP4-217ENST00000628904 ZEB1P37275 1124 aaPredicted RBP11.3□□□□□ -0.6
PKP4-217ENST00000628904 BAZ1BQ9UIG0 1483 aaKnown RBP11.3□□□□□ -0.6
PKP4-217ENST00000628904 WRNQ14191 1432 aaPredicted RBP eCLIP11.28□□□□□ -0.6
PKP4-217ENST00000628904 CEP162Q5TB80 1403 aa11.24□□□□□ -0.61
PKP4-217ENST00000628904 FAM50AQ14320 339 aaKnown RBP11.24□□□□□ -0.61
PKP4-217ENST00000628904 FBLN2P98095 1184 aa11.22□□□□□ -0.61
PKP4-217ENST00000628904 DNAJC5BQ9UF47 199 aa11.22□□□□□ -0.61
PKP4-217ENST00000628904 SMARCA4P51532 1647 aa11.21□□□□□ -0.61
PKP4-217ENST00000628904 ATAD2BQ9ULI0 1458 aa11.17□□□□□ -0.62
PKP4-217ENST00000628904 TOP2AP11388 1531 aaKnown RBP11.16□□□□□ -0.62
PKP4-217ENST00000628904 NEUROD1Q13562 356 aa11.16□□□□□ -0.62
PKP4-217ENST00000628904 CNGB1Q14028 1251 aaPredicted RBP11.15□□□□□ -0.62
PKP4-217ENST00000628904 CLIP1P30622 1438 aa11.15□□□□□ -0.62
PKP4-217ENST00000628904 DIEXFQ68CQ4 756 aaKnown RBP11.15□□□□□ -0.62
PKP4-217ENST00000628904 SMARCA2P51531 1590 aa11.13□□□□□ -0.63
PKP4-217ENST00000628904 KANK4Q5T7N3 995 aaPredicted RBP11.11□□□□□ -0.63
PKP4-217ENST00000628904 BICRAQ9NZM4 1560 aa11.08□□□□□ -0.64
PKP4-217ENST00000628904 TNIKQ9UKE5 1360 aa11.08□□□□□ -0.64
PKP4-217ENST00000628904 GOLGA3Q08378 1498 aa11.07□□□□□ -0.64
PKP4-217ENST00000628904 RAPGEF2Q9Y4G8 1499 aa11.06□□□□□ -0.64
PKP4-217ENST00000628904 HIRIP3Q9BW71 556 aaPredicted RBP11.06□□□□□ -0.64
PKP4-217ENST00000628904 CHIC2Q9UKJ5 165 aa11.02□□□□□ -0.64
PKP4-217ENST00000628904 UNC13AQ9UPW8 1703 aa11.01□□□□□ -0.65
PKP4-217ENST00000628904 CUX2O14529 1486 aa11.01□□□□□ -0.65
PKP4-217ENST00000628904 TDRD9Q8NDG6 1382 aaKnown RBP11.01□□□□□ -0.65
PKP4-217ENST00000628904 CEP164Q9UPV0 1460 aa10.98□□□□□ -0.65
PKP4-217ENST00000628904 POLR3GLQ9BT43 218 aa10.98□□□□□ -0.65
PKP4-217ENST00000628904 TRIM52Q96A61 297 aa10.97□□□□□ -0.65
PKP4-217ENST00000628904 KIF27Q86VH2 1401 aa10.97□□□□□ -0.65
PKP4-217ENST00000628904 SYNJ1O43426 1573 aa10.96□□□□□ -0.66
PKP4-217ENST00000628904 ZNF316A6NFI3 1004 aaPredicted RBP10.96□□□□□ -0.66
PKP4-217ENST00000628904 ZNF777Q9ULD5 760 aaPredicted RBP10.96□□□□□ -0.66
PKP4-217ENST00000628904 EIF4G1Q04637 1599 aaKnown RBP10.94□□□□□ -0.66
PKP4-217ENST00000628904 EEA1Q15075 1411 aa10.94□□□□□ -0.66
PKP4-217ENST00000628904 NESP48681 1621 aa10.94□□□□□ -0.66
PKP4-217ENST00000628904 CENPBP07199 599 aaPredicted RBP10.93□□□□□ -0.66
PKP4-217ENST00000628904 CARMIL1Q5VZK9 1371 aa10.93□□□□□ -0.66
PKP4-217ENST00000628904 CADPSQ9ULU8 1353 aa10.92□□□□□ -0.66
PKP4-217ENST00000628904 SIN3AQ96ST3 1273 aa10.91□□□□□ -0.66
PKP4-217ENST00000628904 MIER1Q8N108 512 aa10.9□□□□□ -0.66
PKP4-217ENST00000628904 RAD54L2Q9Y4B4 1467 aa10.9□□□□□ -0.67
PKP4-217ENST00000628904 ZNF326Q5BKZ1 582 aaKnown RBP10.89□□□□□ -0.67
PKP4-217ENST00000628904 RRP7BPQ9NSQ0 103 aa10.89□□□□□ -0.67
PKP4-217ENST00000628904 GTF3C3Q9Y5Q9 886 aa10.89□□□□□ -0.67
PKP4-217ENST00000628904 VPS8Q8N3P4 1428 aa10.87□□□□□ -0.67
PKP4-217ENST00000628904 MYT1LQ9UL68 1186 aa10.86□□□□□ -0.67
PKP4-217ENST00000628904 NCAPD3P42695 1498 aa10.84□□□□□ -0.67
PKP4-217ENST00000628904 CHMP7Q8WUX9 453 aaPredicted RBP10.84□□□□□ -0.67
PKP4-217ENST00000628904 SCAF1Q9H7N4 1312 aaKnown RBP10.83□□□□□ -0.67
PKP4-217ENST00000628904 IGF1RP08069 1367 aa10.83□□□□□ -0.68
PKP4-217ENST00000628904 SENP3-EIF4A1A0A087X0R7 540 aa10.83□□□□□ -0.68
PKP4-217ENST00000628904 DDX10Q13206 875 aaKnown RBP10.83□□□□□ -0.68
PKP4-217ENST00000628904 FHOD3Q2V2M9 1422 aa10.83□□□□□ -0.68
PKP4-217ENST00000628904 MTUS2Q5JR59 1369 aa10.82□□□□□ -0.68
PKP4-217ENST00000628904 FANCD2Q9BXW9 1451 aa10.82□□□□□ -0.68
PKP4-217ENST00000628904 FGD5Q6ZNL6 1462 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms