RNA–Protein interactions for RNA: ENST00000389757.7

PKP4-201, Transcript of plakophilin 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PKP4, Length 5,777 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-201ENST00000389757 DCAF8L2P0C7V8 631 aa18.51■□□□□ 0.55
PKP4-201ENST00000389757 NISCHQ9Y2I1 1504 aa18.16■□□□□ 0.5
PKP4-201ENST00000389757 SUPT5HO00267 1087 aaKnown RBP17.26■□□□□ 0.35
PKP4-201ENST00000389757 SHROOM4Q9ULL8 1493 aa17.14■□□□□ 0.33
PKP4-201ENST00000389757 EHMT2Q96KQ7 1210 aa16.56■□□□□ 0.24
PKP4-201ENST00000389757 APLP2Q06481 763 aa16.34■□□□□ 0.21
PKP4-201ENST00000389757 FAM9AQ8IZU1 332 aaPredicted RBP16.33■□□□□ 0.2
PKP4-201ENST00000389757 TRIM41Q8WV44 630 aa16.07■□□□□ 0.16
PKP4-201ENST00000389757 RANGAP1P46060 587 aaPredicted RBP16.01■□□□□ 0.15
PKP4-201ENST00000389757 TTBK1Q5TCY1 1321 aaPredicted RBP15.94■□□□□ 0.14
PKP4-201ENST00000389757 ATP1B4Q9UN42 357 aaPredicted RBP15.9■□□□□ 0.14
PKP4-201ENST00000389757 UBTFP17480 764 aaKnown RBP15.87■□□□□ 0.13
PKP4-201ENST00000389757 ABCC9O60706 1549 aa15.85■□□□□ 0.13
PKP4-201ENST00000389757 PCGF6Q9BYE7 350 aa15.65■□□□□ 0.1
PKP4-201ENST00000389757 PABPN1Q86U42 306 aaKnown RBP eCLIP15.65■□□□□ 0.17e-8■□□□□ 10
PKP4-201ENST00000389757 PELP1Q8IZL8 1130 aaKnown RBP15.5■□□□□ 0.07
PKP4-201ENST00000389757 CCER1Q8TC90 406 aaPredicted RBP15.5■□□□□ 0.07
PKP4-201ENST00000389757 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.48■□□□□ 0.07
PKP4-201ENST00000389757 HNRNPUL2Q1KMD3 747 aaKnown RBP15.48■□□□□ 0.07
PKP4-201ENST00000389757 ZEB1P37275 1124 aaPredicted RBP15.41■□□□□ 0.06
PKP4-201ENST00000389757 MYT1LQ9UL68 1186 aa15.4■□□□□ 0.06
PKP4-201ENST00000389757 PPARGC1BQ86YN6 1023 aaKnown RBP15.35■□□□□ 0.05
PKP4-201ENST00000389757 CHIC1Q5VXU3 224 aa15.3■□□□□ 0.04
PKP4-201ENST00000389757 ITGAEP38570 1179 aa15.24■□□□□ 0.03
PKP4-201ENST00000389757 LOC105371045A0A1W2PR82 267 aa15.2■□□□□ 0.02
PKP4-201ENST00000389757 TRIM26Q12899 539 aaPredicted RBP15.15■□□□□ 0.02
PKP4-201ENST00000389757 FBLN2P98095 1184 aa15.11■□□□□ 0.01
PKP4-201ENST00000389757 CENPBP07199 599 aaPredicted RBP15.11■□□□□ 0.01
PKP4-201ENST00000389757 SCRIBQ14160 1630 aa15.07■□□□□ 0
PKP4-201ENST00000389757 CCDC180Q9P1Z9 1646 aa15.02■□□□□ -0
PKP4-201ENST00000389757 ZCCHC6Q5VYS8 1495 aaKnown RBP15□□□□□ -0.01
PKP4-201ENST00000389757 POLR3GLQ9BT43 218 aa14.97□□□□□ -0.01
PKP4-201ENST00000389757 FAM50AQ14320 339 aaKnown RBP14.95□□□□□ -0.02
PKP4-201ENST00000389757 NEFLP07196 543 aa14.91□□□□□ -0.02
PKP4-201ENST00000389757 YTHDC1Q96MU7 727 aaKnown RBP14.87□□□□□ -0.03
PKP4-201ENST00000389757 RB1CC1Q8TDY2 1594 aa14.85□□□□□ -0.03
PKP4-201ENST00000389757 TRIM52Q96A61 297 aa14.85□□□□□ -0.03
PKP4-201ENST00000389757 CSRNP3Q8WYN3 585 aa14.82□□□□□ -0.04
PKP4-201ENST00000389757 P3H3Q8IVL6 736 aa14.8□□□□□ -0.04
PKP4-201ENST00000389757 SLC4A1APQ9BWU0 796 aaKnown RBP14.79□□□□□ -0.04
PKP4-201ENST00000389757 ERICH6Q7L0X2 663 aa14.77□□□□□ -0.05
PKP4-201ENST00000389757 ARID3CA6NKF2 412 aa14.75□□□□□ -0.05
PKP4-201ENST00000389757 CNGB1Q14028 1251 aaPredicted RBP14.75□□□□□ -0.05
PKP4-201ENST00000389757 HRCP23327 699 aa14.71□□□□□ -0.05
PKP4-201ENST00000389757 CDK11AQ9UQ88 783 aaPredicted RBP14.71□□□□□ -0.05
PKP4-201ENST00000389757 NACADO15069 1562 aa14.68□□□□□ -0.06
PKP4-201ENST00000389757 NEUROD1Q13562 356 aa14.65□□□□□ -0.06
PKP4-201ENST00000389757 NPM1P06748 294 aaKnown RBP eCLIP14.65□□□□□ -0.06
PKP4-201ENST00000389757 ZNF777Q9ULD5 760 aaPredicted RBP14.64□□□□□ -0.07
PKP4-201ENST00000389757 ZNF326Q5BKZ1 582 aaKnown RBP14.61□□□□□ -0.07
PKP4-201ENST00000389757 CHMP7Q8WUX9 453 aaPredicted RBP14.56□□□□□ -0.08
PKP4-201ENST00000389757 BCANQ96GW7 911 aa14.55□□□□□ -0.08
PKP4-201ENST00000389757 ESF1Q9H501 851 aaKnown RBP14.55□□□□□ -0.08
PKP4-201ENST00000389757 BAZ1BQ9UIG0 1483 aaKnown RBP14.49□□□□□ -0.09
PKP4-201ENST00000389757 RSF1Q96T23 1441 aaPredicted RBP14.45□□□□□ -0.1
PKP4-201ENST00000389757 DIEXFQ68CQ4 756 aaKnown RBP14.43□□□□□ -0.1
PKP4-201ENST00000389757 DAXXQ9UER7 740 aaPredicted RBP14.4□□□□□ -0.1
PKP4-201ENST00000389757 STAG3Q9UJ98 1225 aa14.39□□□□□ -0.11
PKP4-201ENST00000389757 ERCC6Q03468 1493 aa14.37□□□□□ -0.11
PKP4-201ENST00000389757 CHGAP10645 457 aaKnown RBP14.36□□□□□ -0.11
PKP4-201ENST00000389757 PLPPR3Q6T4P5 718 aa14.36□□□□□ -0.11
PKP4-201ENST00000389757 DCAF1Q9Y4B6 1507 aa14.35□□□□□ -0.11
PKP4-201ENST00000389757 ANP32CO43423 234 aa14.35□□□□□ -0.11
PKP4-201ENST00000389757 BAZ1AQ9NRL2 1556 aaPredicted RBP14.33□□□□□ -0.12
PKP4-201ENST00000389757 TSPY4P0CV99 314 aa14.33□□□□□ -0.12
PKP4-201ENST00000389757 TSPY10P0CW01 314 aa14.33□□□□□ -0.12
PKP4-201ENST00000389757 MTUS2Q5JR59 1369 aa14.33□□□□□ -0.12
PKP4-201ENST00000389757 WRNQ14191 1432 aaPredicted RBP eCLIP14.32□□□□□ -0.12
PKP4-201ENST00000389757 NEFMP07197 916 aa14.29□□□□□ -0.12
PKP4-201ENST00000389757 CHIC2Q9UKJ5 165 aa14.29□□□□□ -0.12
PKP4-201ENST00000389757 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.28□□□□□ -0.126e-10■■□□□ 12.1
PKP4-201ENST00000389757 EEA1Q15075 1411 aa14.28□□□□□ -0.12
PKP4-201ENST00000389757 CLSPNQ9HAW4 1339 aa14.27□□□□□ -0.12
PKP4-201ENST00000389757 CLIP1P30622 1438 aa14.27□□□□□ -0.13
PKP4-201ENST00000389757 KIF27Q86VH2 1401 aa14.26□□□□□ -0.13
PKP4-201ENST00000389757 KCNH8Q96L42 1107 aa14.25□□□□□ -0.13
PKP4-201ENST00000389757 PLEKHD1A6NEE1 506 aa14.25□□□□□ -0.13
PKP4-201ENST00000389757 SLC24A1O60721 1099 aa14.25□□□□□ -0.13
PKP4-201ENST00000389757 TONSLQ96HA7 1378 aa14.25□□□□□ -0.13
PKP4-201ENST00000389757 CECR2Q9BXF3 1484 aa14.23□□□□□ -0.13
PKP4-201ENST00000389757 ZNF316A6NFI3 1004 aaPredicted RBP14.22□□□□□ -0.13
PKP4-201ENST00000389757 GOLGA3Q08378 1498 aa14.2□□□□□ -0.14
PKP4-201ENST00000389757 ZBTB47Q9UFB7 747 aaPredicted RBP14.17□□□□□ -0.14
PKP4-201ENST00000389757 CANXP27824 592 aaKnown RBP14.13□□□□□ -0.15
PKP4-201ENST00000389757 CEP164Q9UPV0 1460 aa14.1□□□□□ -0.15
PKP4-201ENST00000389757 SMARCA2P51531 1590 aa14.09□□□□□ -0.15
PKP4-201ENST00000389757 CEP162Q5TB80 1403 aa14.09□□□□□ -0.15
PKP4-201ENST00000389757 CFDP1Q9UEE9 299 aaPredicted RBP14.09□□□□□ -0.15
PKP4-201ENST00000389757 RRP7BPQ9NSQ0 103 aa14.08□□□□□ -0.15
PKP4-201ENST00000389757 PDS5BQ9NTI5 1447 aa14.08□□□□□ -0.16
PKP4-201ENST00000389757 KDM2AQ9Y2K7 1162 aa14.07□□□□□ -0.16
PKP4-201ENST00000389757 ARID4BQ4LE39 1312 aaPredicted RBP14.07□□□□□ -0.16
PKP4-201ENST00000389757 CUX2O14529 1486 aa14.05□□□□□ -0.16
PKP4-201ENST00000389757 PPP1R15AO75807 674 aaPredicted RBP14.05□□□□□ -0.16
PKP4-201ENST00000389757 MROH2BQ7Z745 1585 aa14.03□□□□□ -0.16
PKP4-201ENST00000389757 TNIKQ9UKE5 1360 aa14.03□□□□□ -0.16
PKP4-201ENST00000389757 CARMIL1Q5VZK9 1371 aa14.03□□□□□ -0.16
PKP4-201ENST00000389757 ACIN1Q9UKV3 1341 aaKnown RBP14.02□□□□□ -0.17
PKP4-201ENST00000389757 MYO15BQ96JP2 1530 aa14□□□□□ -0.17
PKP4-201ENST00000389757 BCL11AQ9H165 835 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms