RNA–Protein interactions for RNA: ENST00000341394.8

CAPRIN1-201, Transcript of cell cycle associated protein 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CAPRIN1, Length 4,108 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPRIN1-201ENST00000341394 NISCHQ9Y2I1 1504 aa22.47■■□□□ 1.19
CAPRIN1-201ENST00000341394 CCDC180Q9P1Z9 1646 aa19.42■□□□□ 0.7
CAPRIN1-201ENST00000341394 DCAF8L2P0C7V8 631 aa18.96■□□□□ 0.63
CAPRIN1-201ENST00000341394 ZCCHC6Q5VYS8 1495 aaKnown RBP18.89■□□□□ 0.61
CAPRIN1-201ENST00000341394 SHROOM4Q9ULL8 1493 aa18.69■□□□□ 0.58
CAPRIN1-201ENST00000341394 ABCC9O60706 1549 aa18.56■□□□□ 0.56
CAPRIN1-201ENST00000341394 DCAF1Q9Y4B6 1507 aa18.4■□□□□ 0.54
CAPRIN1-201ENST00000341394 SCRIBQ14160 1630 aa18.13■□□□□ 0.49
CAPRIN1-201ENST00000341394 MYO15BQ96JP2 1530 aa18.1■□□□□ 0.49
CAPRIN1-201ENST00000341394 NACADO15069 1562 aa18.05■□□□□ 0.48
CAPRIN1-201ENST00000341394 SUPT5HO00267 1087 aaKnown RBP17.94■□□□□ 0.46
CAPRIN1-201ENST00000341394 RB1CC1Q8TDY2 1594 aa17.91■□□□□ 0.46
CAPRIN1-201ENST00000341394 UNC13AQ9UPW8 1703 aa17.83■□□□□ 0.45
CAPRIN1-201ENST00000341394 CECR2Q9BXF3 1484 aa17.63■□□□□ 0.41
CAPRIN1-201ENST00000341394 PABPN1Q86U42 306 aaKnown RBP eCLIP17.58■□□□□ 0.41
CAPRIN1-201ENST00000341394 BICRAQ9NZM4 1560 aa17.57■□□□□ 0.4
CAPRIN1-201ENST00000341394 RSF1Q96T23 1441 aaPredicted RBP17.53■□□□□ 0.4
CAPRIN1-201ENST00000341394 MROH2BQ7Z745 1585 aa17.49■□□□□ 0.39
CAPRIN1-201ENST00000341394 EHMT2Q96KQ7 1210 aa17.44■□□□□ 0.38
CAPRIN1-201ENST00000341394 WIZO95785 1651 aa17.39■□□□□ 0.37
CAPRIN1-201ENST00000341394 SMARCA4P51532 1647 aa17.28■□□□□ 0.36
CAPRIN1-201ENST00000341394 BAZ1AQ9NRL2 1556 aaPredicted RBP17.27■□□□□ 0.36
CAPRIN1-201ENST00000341394 CHIC1Q5VXU3 224 aa17.14■□□□□ 0.33
CAPRIN1-201ENST00000341394 PCGF6Q9BYE7 350 aa17.14■□□□□ 0.33
CAPRIN1-201ENST00000341394 TOP2AP11388 1531 aaKnown RBP17.02■□□□□ 0.32
CAPRIN1-201ENST00000341394 EIF4G1Q04637 1599 aaKnown RBP16.97■□□□□ 0.31
CAPRIN1-201ENST00000341394 PEG3Q9GZU2 1588 aa16.97■□□□□ 0.31
CAPRIN1-201ENST00000341394 ATAD2BQ9ULI0 1458 aa16.96■□□□□ 0.31
CAPRIN1-201ENST00000341394 SMARCA2P51531 1590 aa16.96■□□□□ 0.31
CAPRIN1-201ENST00000341394 CCDC88BA6NC98 1476 aa16.95■□□□□ 0.3
CAPRIN1-201ENST00000341394 BAZ1BQ9UIG0 1483 aaKnown RBP16.84■□□□□ 0.29
CAPRIN1-201ENST00000341394 TTBK1Q5TCY1 1321 aaPredicted RBP16.83■□□□□ 0.28
CAPRIN1-201ENST00000341394 FAM9AQ8IZU1 332 aaPredicted RBP16.81■□□□□ 0.28
CAPRIN1-201ENST00000341394 ABCC8Q09428 1581 aa16.76■□□□□ 0.27
CAPRIN1-201ENST00000341394 PPARGC1BQ86YN6 1023 aaKnown RBP16.75■□□□□ 0.27
CAPRIN1-201ENST00000341394 CC2D2AQ9P2K1 1620 aa16.74■□□□□ 0.27
CAPRIN1-201ENST00000341394 NCAPD3P42695 1498 aa16.71■□□□□ 0.27
CAPRIN1-201ENST00000341394 TRIM41Q8WV44 630 aa16.7■□□□□ 0.26
CAPRIN1-201ENST00000341394 HMGXB3Q12766 1538 aa16.68■□□□□ 0.26
CAPRIN1-201ENST00000341394 LOC105371045A0A1W2PR82 267 aa16.65■□□□□ 0.26
CAPRIN1-201ENST00000341394 DNAJC5BQ9UF47 199 aa16.61■□□□□ 0.25
CAPRIN1-201ENST00000341394 SYNJ1O43426 1573 aa16.49■□□□□ 0.23
CAPRIN1-201ENST00000341394 WRNQ14191 1432 aaPredicted RBP eCLIP16.44■□□□□ 0.22
CAPRIN1-201ENST00000341394 RUSC2Q8N2Y8 1516 aa16.43■□□□□ 0.22
CAPRIN1-201ENST00000341394 SOGA1O94964 1423 aa16.42■□□□□ 0.22
CAPRIN1-201ENST00000341394 CFTRP13569 1480 aa16.42■□□□□ 0.22
CAPRIN1-201ENST00000341394 NESP48681 1621 aa16.39■□□□□ 0.21
CAPRIN1-201ENST00000341394 HRCP23327 699 aa16.38■□□□□ 0.21
CAPRIN1-201ENST00000341394 PRDM2Q13029 1718 aa16.33■□□□□ 0.21
CAPRIN1-201ENST00000341394 CADPSQ9ULU8 1353 aa16.33■□□□□ 0.2
CAPRIN1-201ENST00000341394 CUX1P39880 1505 aa16.31■□□□□ 0.2
CAPRIN1-201ENST00000341394 TOP2BQ02880 1626 aa16.29■□□□□ 0.2
CAPRIN1-201ENST00000341394 YTHDC1Q96MU7 727 aaKnown RBP16.28■□□□□ 0.2
CAPRIN1-201ENST00000341394 BIVM-ERCC5R4GMW8 1640 aa16.26■□□□□ 0.19
CAPRIN1-201ENST00000341394 RANGAP1P46060 587 aaPredicted RBP16.24■□□□□ 0.19
CAPRIN1-201ENST00000341394 FANCD2Q9BXW9 1451 aa16.2■□□□□ 0.18
CAPRIN1-201ENST00000341394 CCER1Q8TC90 406 aaPredicted RBP16.14■□□□□ 0.17
CAPRIN1-201ENST00000341394 CSRNP3Q8WYN3 585 aa16.14■□□□□ 0.17
CAPRIN1-201ENST00000341394 KIF21AQ7Z4S6 1674 aa16.13■□□□□ 0.17
CAPRIN1-201ENST00000341394 LAMC3Q9Y6N6 1575 aa16.12■□□□□ 0.17
CAPRIN1-201ENST00000341394 UBTFP17480 764 aaKnown RBP16.1■□□□□ 0.17
CAPRIN1-201ENST00000341394 FGD5Q6ZNL6 1462 aa16.09■□□□□ 0.17
CAPRIN1-201ENST00000341394 URB2Q14146 1524 aaKnown RBP16.06■□□□□ 0.16
CAPRIN1-201ENST00000341394 EEA1Q15075 1411 aa16.05■□□□□ 0.16
CAPRIN1-201ENST00000341394 TOPBP1Q92547 1522 aa16.05■□□□□ 0.16
CAPRIN1-201ENST00000341394 RAPGEF2Q9Y4G8 1499 aa16.04■□□□□ 0.16
CAPRIN1-201ENST00000341394 RAD54L2Q9Y4B4 1467 aa16.04■□□□□ 0.16
CAPRIN1-201ENST00000341394 CEP164Q9UPV0 1460 aa16.04■□□□□ 0.16
CAPRIN1-201ENST00000341394 DNMBPQ6XZF7 1577 aa16.01■□□□□ 0.15
CAPRIN1-201ENST00000341394 POLA1P09884 1462 aaPredicted RBP16■□□□□ 0.15
CAPRIN1-201ENST00000341394 KIF21BO75037 1637 aa15.99■□□□□ 0.15
CAPRIN1-201ENST00000341394 CUX2O14529 1486 aa15.99■□□□□ 0.15
CAPRIN1-201ENST00000341394 GOLGA3Q08378 1498 aa15.98■□□□□ 0.15
CAPRIN1-201ENST00000341394 CEP162Q5TB80 1403 aa15.97■□□□□ 0.15
CAPRIN1-201ENST00000341394 PDS5BQ9NTI5 1447 aa15.96■□□□□ 0.15
CAPRIN1-201ENST00000341394 KIF27Q86VH2 1401 aa15.94■□□□□ 0.14
CAPRIN1-201ENST00000341394 TNIKQ9UKE5 1360 aa15.94■□□□□ 0.14
CAPRIN1-201ENST00000341394 PRXQ9BXM0 1461 aa15.93■□□□□ 0.14
CAPRIN1-201ENST00000341394 TRIM26Q12899 539 aaPredicted RBP15.91■□□□□ 0.14
CAPRIN1-201ENST00000341394 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.9■□□□□ 0.14
CAPRIN1-201ENST00000341394 IGF1RP08069 1367 aa15.89■□□□□ 0.13
CAPRIN1-201ENST00000341394 WDR97A6NE52 1622 aa15.88■□□□□ 0.13
CAPRIN1-201ENST00000341394 CENPBP07199 599 aaPredicted RBP15.86■□□□□ 0.13
CAPRIN1-201ENST00000341394 ABCA10Q8WWZ4 1543 aa15.86■□□□□ 0.13
CAPRIN1-201ENST00000341394 ERCC6Q03468 1493 aa15.85■□□□□ 0.13
CAPRIN1-201ENST00000341394 TDRD9Q8NDG6 1382 aaKnown RBP15.85■□□□□ 0.13
CAPRIN1-201ENST00000341394 TARBP1Q13395 1621 aaKnown RBP15.82■□□□□ 0.12
CAPRIN1-201ENST00000341394 ERICH3Q5RHP9 1530 aa15.82■□□□□ 0.12
CAPRIN1-201ENST00000341394 MRC2Q9UBG0 1479 aa15.81■□□□□ 0.12
CAPRIN1-201ENST00000341394 ABCA5Q8WWZ7 1642 aa15.78■□□□□ 0.12
CAPRIN1-201ENST00000341394 CLIP1P30622 1438 aa15.78■□□□□ 0.12
CAPRIN1-201ENST00000341394 CARMIL1Q5VZK9 1371 aa15.78■□□□□ 0.12
CAPRIN1-201ENST00000341394 ZEB1P37275 1124 aaPredicted RBP15.77■□□□□ 0.11
CAPRIN1-201ENST00000341394 THOC2Q8NI27 1593 aaKnown RBP15.76■□□□□ 0.11
CAPRIN1-201ENST00000341394 WDR62O43379 1518 aa15.75■□□□□ 0.11
CAPRIN1-201ENST00000341394 ZNF608Q9ULD9 1512 aaPredicted RBP15.75■□□□□ 0.11
CAPRIN1-201ENST00000341394 PELP1Q8IZL8 1130 aaKnown RBP15.75■□□□□ 0.11
CAPRIN1-201ENST00000341394 AQRO60306 1485 aaKnown RBP eCLIP15.74■□□□□ 0.114e-7■■■■■ 34.7
CAPRIN1-201ENST00000341394 GAPVD1Q14C86 1478 aa15.72■□□□□ 0.11
CAPRIN1-201ENST00000341394 APLP2Q06481 763 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms