RNA–Protein interactions for RNA: ENST00000452162.5

PKP4-206, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 2,359 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-206ENST00000452162 NISCHQ9Y2I1 1504 aa24.68■■□□□ 1.54
PKP4-206ENST00000452162 CCDC180Q9P1Z9 1646 aa21.87■■□□□ 1.09
PKP4-206ENST00000452162 ABCC9O60706 1549 aa21.32■■□□□ 1
PKP4-206ENST00000452162 DCAF8L2P0C7V8 631 aa20.61■□□□□ 0.89
PKP4-206ENST00000452162 ZCCHC6Q5VYS8 1495 aaKnown RBP20.59■□□□□ 0.89
PKP4-206ENST00000452162 NACADO15069 1562 aa20.52■□□□□ 0.88
PKP4-206ENST00000452162 RB1CC1Q8TDY2 1594 aa20.52■□□□□ 0.88
PKP4-206ENST00000452162 MYO15BQ96JP2 1530 aa20.41■□□□□ 0.86
PKP4-206ENST00000452162 DCAF1Q9Y4B6 1507 aa20.39■□□□□ 0.85
PKP4-206ENST00000452162 UNC13AQ9UPW8 1703 aa20.14■□□□□ 0.81
PKP4-206ENST00000452162 SCRIBQ14160 1630 aa20.01■□□□□ 0.79
PKP4-206ENST00000452162 PABPN1Q86U42 306 aaKnown RBP eCLIP19.96■□□□□ 0.79
PKP4-206ENST00000452162 BICRAQ9NZM4 1560 aa19.93■□□□□ 0.78
PKP4-206ENST00000452162 SHROOM4Q9ULL8 1493 aa19.64■□□□□ 0.74
PKP4-206ENST00000452162 DNAJC5BQ9UF47 199 aa19.48■□□□□ 0.71
PKP4-206ENST00000452162 EIF4G1Q04637 1599 aaKnown RBP19.38■□□□□ 0.69
PKP4-206ENST00000452162 CC2D2AQ9P2K1 1620 aa19.28■□□□□ 0.68
PKP4-206ENST00000452162 CECR2Q9BXF3 1484 aa19.25■□□□□ 0.67
PKP4-206ENST00000452162 SMARCA4P51532 1647 aa19.13■□□□□ 0.65
PKP4-206ENST00000452162 BAZ1AQ9NRL2 1556 aaPredicted RBP19.1■□□□□ 0.65
PKP4-206ENST00000452162 MROH2BQ7Z745 1585 aa19.05■□□□□ 0.64
PKP4-206ENST00000452162 ATAD2BQ9ULI0 1458 aa18.99■□□□□ 0.63
PKP4-206ENST00000452162 SMARCA2P51531 1590 aa18.95■□□□□ 0.62
PKP4-206ENST00000452162 NCAPD3P42695 1498 aa18.94■□□□□ 0.62
PKP4-206ENST00000452162 PEG3Q9GZU2 1588 aa18.92■□□□□ 0.62
PKP4-206ENST00000452162 WIZO95785 1651 aa18.87■□□□□ 0.61
PKP4-206ENST00000452162 RSF1Q96T23 1441 aaPredicted RBP18.86■□□□□ 0.61
PKP4-206ENST00000452162 HMGXB3Q12766 1538 aa18.86■□□□□ 0.61
PKP4-206ENST00000452162 BAZ1BQ9UIG0 1483 aaKnown RBP18.83■□□□□ 0.61
PKP4-206ENST00000452162 SUPT5HO00267 1087 aaKnown RBP18.75■□□□□ 0.59
PKP4-206ENST00000452162 TOP2AP11388 1531 aaKnown RBP18.63■□□□□ 0.57
PKP4-206ENST00000452162 NESP48681 1621 aa18.5■□□□□ 0.55
PKP4-206ENST00000452162 CCDC88BA6NC98 1476 aa18.43■□□□□ 0.54
PKP4-206ENST00000452162 LAMC3Q9Y6N6 1575 aa18.42■□□□□ 0.54
PKP4-206ENST00000452162 CADPSQ9ULU8 1353 aa18.4■□□□□ 0.54
PKP4-206ENST00000452162 ERCC6Q03468 1493 aa18.33■□□□□ 0.53
PKP4-206ENST00000452162 CFTRP13569 1480 aa18.32■□□□□ 0.52
PKP4-206ENST00000452162 KIF21AQ7Z4S6 1674 aa18.29■□□□□ 0.52
PKP4-206ENST00000452162 PDS5BQ9NTI5 1447 aa18.28■□□□□ 0.52
PKP4-206ENST00000452162 PRDM2Q13029 1718 aa18.22■□□□□ 0.51
PKP4-206ENST00000452162 FANCD2Q9BXW9 1451 aa18.2■□□□□ 0.5
PKP4-206ENST00000452162 THOC2Q8NI27 1593 aaKnown RBP18.17■□□□□ 0.5
PKP4-206ENST00000452162 CHIC1Q5VXU3 224 aa18.16■□□□□ 0.5
PKP4-206ENST00000452162 CEP164Q9UPV0 1460 aa18.15■□□□□ 0.5
PKP4-206ENST00000452162 MRC2Q9UBG0 1479 aa18.1■□□□□ 0.49
PKP4-206ENST00000452162 CUX2O14529 1486 aa18.07■□□□□ 0.48
PKP4-206ENST00000452162 WDR62O43379 1518 aa18.04■□□□□ 0.48
PKP4-206ENST00000452162 URB2Q14146 1524 aaKnown RBP18.03■□□□□ 0.48
PKP4-206ENST00000452162 TOPBP1Q92547 1522 aa17.93■□□□□ 0.46
PKP4-206ENST00000452162 DNMBPQ6XZF7 1577 aa17.91■□□□□ 0.46
PKP4-206ENST00000452162 ABCC8Q09428 1581 aa17.89■□□□□ 0.45
PKP4-206ENST00000452162 CUX1P39880 1505 aa17.86■□□□□ 0.45
PKP4-206ENST00000452162 POLA1P09884 1462 aaPredicted RBP17.79■□□□□ 0.44
PKP4-206ENST00000452162 FGD5Q6ZNL6 1462 aa17.77■□□□□ 0.43
PKP4-206ENST00000452162 WRNQ14191 1432 aaPredicted RBP eCLIP17.77■□□□□ 0.43
PKP4-206ENST00000452162 IFT140Q96RY7 1462 aa17.76■□□□□ 0.43
PKP4-206ENST00000452162 SYNJ1O43426 1573 aa17.75■□□□□ 0.43
PKP4-206ENST00000452162 RAD54L2Q9Y4B4 1467 aa17.74■□□□□ 0.43
PKP4-206ENST00000452162 TARBP1Q13395 1621 aaKnown RBP17.73■□□□□ 0.43
PKP4-206ENST00000452162 BIVM-ERCC5R4GMW8 1640 aa17.72■□□□□ 0.43
PKP4-206ENST00000452162 TOP2BQ02880 1626 aa17.72■□□□□ 0.43
PKP4-206ENST00000452162 ZNF608Q9ULD9 1512 aaPredicted RBP17.72■□□□□ 0.43
PKP4-206ENST00000452162 SOGA1O94964 1423 aa17.71■□□□□ 0.43
PKP4-206ENST00000452162 EIF4G3O43432 1585 aaKnown RBP17.64■□□□□ 0.41
PKP4-206ENST00000452162 AQRO60306 1485 aaKnown RBP eCLIP17.63■□□□□ 0.411e-9■■□□□ 14.2
PKP4-206ENST00000452162 WDR97A6NE52 1622 aa17.62■□□□□ 0.41
PKP4-206ENST00000452162 TDRD9Q8NDG6 1382 aaKnown RBP17.62■□□□□ 0.41
PKP4-206ENST00000452162 ABCA10Q8WWZ4 1543 aa17.59■□□□□ 0.41
PKP4-206ENST00000452162 TRIM41Q8WV44 630 aa17.58■□□□□ 0.4
PKP4-206ENST00000452162 ABCA5Q8WWZ7 1642 aa17.52■□□□□ 0.39
PKP4-206ENST00000452162 GAPVD1Q14C86 1478 aa17.51■□□□□ 0.39
PKP4-206ENST00000452162 LOC105371045A0A1W2PR82 267 aa17.5■□□□□ 0.39
PKP4-206ENST00000452162 PBRM1Q86U86 1689 aa17.49■□□□□ 0.39
PKP4-206ENST00000452162 GRIN2BQ13224 1484 aa17.47■□□□□ 0.39
PKP4-206ENST00000452162 SNAPC4Q5SXM2 1469 aa17.45■□□□□ 0.38
PKP4-206ENST00000452162 CHD1O14646 1710 aa17.42■□□□□ 0.38
PKP4-206ENST00000452162 MAGI1Q96QZ7 1491 aaPredicted RBP17.41■□□□□ 0.38
PKP4-206ENST00000452162 FBLN2P98095 1184 aa17.39■□□□□ 0.38
PKP4-206ENST00000452162 DNAJC5Q9H3Z4 198 aa17.39■□□□□ 0.38
PKP4-206ENST00000452162 KIF27Q86VH2 1401 aa17.38■□□□□ 0.37
PKP4-206ENST00000452162 ERICH3Q5RHP9 1530 aa17.37■□□□□ 0.37
PKP4-206ENST00000452162 OSCARQ8IYS5 282 aa17.37■□□□□ 0.37
PKP4-206ENST00000452162 SYNJ2O15056 1496 aa17.35■□□□□ 0.37
PKP4-206ENST00000452162 CHMP7Q8WUX9 453 aaPredicted RBP17.34■□□□□ 0.37
PKP4-206ENST00000452162 ADAMTS12P58397 1594 aa17.34■□□□□ 0.37
PKP4-206ENST00000452162 RUSC2Q8N2Y8 1516 aa17.33■□□□□ 0.36
PKP4-206ENST00000452162 IGF1RP08069 1367 aa17.31■□□□□ 0.36
PKP4-206ENST00000452162 FHAD1B1AJZ9 1412 aa17.3■□□□□ 0.36
PKP4-206ENST00000452162 FAM9AQ8IZU1 332 aaPredicted RBP17.29■□□□□ 0.36
PKP4-206ENST00000452162 GRIN2AQ12879 1464 aa17.26■□□□□ 0.35
PKP4-206ENST00000452162 CUL7Q14999 1698 aa17.24■□□□□ 0.35
PKP4-206ENST00000452162 CARMIL1Q5VZK9 1371 aa17.21■□□□□ 0.35
PKP4-206ENST00000452162 CEP170Q5SW79 1584 aa17.19■□□□□ 0.34
PKP4-206ENST00000452162 CLASP1Q7Z460 1538 aa17.19■□□□□ 0.34
PKP4-206ENST00000452162 NUP160Q12769 1436 aa17.17■□□□□ 0.34
PKP4-206ENST00000452162 RAPGEF2Q9Y4G8 1499 aa17.11■□□□□ 0.33
PKP4-206ENST00000452162 CSRNP3Q8WYN3 585 aa17.11■□□□□ 0.33
PKP4-206ENST00000452162 RIMBP3CA6NJZ7 1639 aa17.1■□□□□ 0.33
PKP4-206ENST00000452162 RIMBP3BA6NNM3 1639 aa17.1■□□□□ 0.33
PKP4-206ENST00000452162 RIMBP3Q9UFD9 1639 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms