Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SLC25A13-206ENST00000490072 578 ntTSL 59.52□□□□□ -0.892e-7■■■□□ 14.6
SMNDC1O75940 SLC25A13-201ENST00000265631 3136 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.892e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-201ENST00000263255 2058 ntTSL 1 (best)9.23□□□□□ -0.932e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-216ENST00000491545 2530 ntTSL 1 (best)9.1□□□□□ -0.952e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-213ENST00000449676 533 ntTSL 49.03□□□□□ -0.962e-7■■■□□ 14.6
SMNDC1O75940 REXO2-218ENST00000544827 880 ntTSL 3 BASIC9.01□□□□□ -0.972e-7■■■□□ 14.6
SMNDC1O75940 COPB2-201ENST00000333188 3360 ntAPPRIS P1 TSL 1 (best) BASIC8.87□□□□□ -0.992e-7■■■□□ 14.6
SMNDC1O75940 CAPN2-210ENST00000492565 331 ntTSL 58.67□□□□□ -1.022e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-205ENST00000426396 641 ntTSL 58.39□□□□□ -1.072e-7■■■□□ 14.6
SMNDC1O75940 REXO2-203ENST00000538403 753 ntTSL 28.28□□□□□ -1.082e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-215ENST00000478550 562 ntTSL 48.2□□□□□ -1.12e-7■■■□□ 14.6
SMNDC1O75940 REXO2-209ENST00000539788 626 ntTSL 38.2□□□□□ -1.12e-7■■■□□ 14.6
SMNDC1O75940 REXO2-217ENST00000544507 641 ntTSL 38.13□□□□□ -1.112e-7■■■□□ 14.6
SMNDC1O75940 SLC25A13-204ENST00000484495 540 ntTSL 58.09□□□□□ -1.112e-7■■■□□ 14.6
SMNDC1O75940 PPME1-203ENST00000535205 636 ntTSL 27.73□□□□□ -1.172e-7■■■□□ 14.6
SMNDC1O75940 COPB2-210ENST00000512309 565 ntTSL 57.7□□□□□ -1.182e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-212ENST00000447566 1243 ntTSL 57.66□□□□□ -1.182e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-209ENST00000434193 598 ntTSL 47.48□□□□□ -1.212e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-207ENST00000430221 734 ntTSL 47.12□□□□□ -1.272e-7■■■□□ 14.6
SMNDC1O75940 SLC25A13-207ENST00000492869 433 ntTSL 56.93□□□□□ -1.32e-7■■■□□ 14.6
SMNDC1O75940 REXO2-219ENST00000546316 726 ntTSL 36.67□□□□□ -1.342e-7■■■□□ 14.6
SMNDC1O75940 CAPN2-209ENST00000487223 2991 ntTSL 26.23□□□□□ -1.412e-7■■■□□ 14.6
SMNDC1O75940 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC6.23□□□□□ -1.412e-7■■■□□ 14.6
SMNDC1O75940 CAPN2-206ENST00000474026 4130 ntTSL 25.13□□□□□ -1.592e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.81□□□□□ -1.642e-7■■■□□ 14.6
SMNDC1O75940 SFPQ-208ENST00000485365 693 ntTSL 28.53□□□□□ -1.048e-15■■■□□ 14.6
SMNDC1O75940 SFPQ-205ENST00000468598 2835 ntTSL 1 (best)7.64□□□□□ -1.198e-15■■■□□ 14.6
SMNDC1O75940 SFPQ-203ENST00000466213 1431 ntTSL 1 (best)7.63□□□□□ -1.198e-15■■■□□ 14.6
SMNDC1O75940 SFPQ-202ENST00000460428 464 ntTSL 27.58□□□□□ -1.28e-15■■■□□ 14.6
SMNDC1O75940 SFPQ-204ENST00000466745 662 ntTSL 26.86□□□□□ -1.318e-15■■■□□ 14.6
SMNDC1O75940 SFPQ-209ENST00000485454 339 ntTSL 26.36□□□□□ -1.398e-15■■■□□ 14.6
SMNDC1O75940 SFPQ-206ENST00000470472 874 ntTSL 55.65□□□□□ -1.58e-15■■■□□ 14.6
SMNDC1O75940 SFPQ-210ENST00000490668 434 ntTSL 24.82□□□□□ -1.648e-15■■■□□ 14.6
SMNDC1O75940 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.01□□□□□ -0.173e-7■■■□□ 14.6
SMNDC1O75940 FDPS-212ENST00000487002 2017 ntTSL 217.03■□□□□ 0.326e-7■■■□□ 14.6
SMNDC1O75940 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.146e-7■■■□□ 14.6
SMNDC1O75940 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.196e-7■■■□□ 14.6
SMNDC1O75940 FDPS-208ENST00000470171 746 ntTSL 213.83□□□□□ -0.26e-7■■■□□ 14.6
SMNDC1O75940 FDPS-205ENST00000465559 677 ntTSL 313.77□□□□□ -0.216e-7■■■□□ 14.6
SMNDC1O75940 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.47□□□□□ -0.256e-7■■■□□ 14.6
SMNDC1O75940 FDPS-210ENST00000474345 713 ntTSL 313.47□□□□□ -0.256e-7■■■□□ 14.6
SMNDC1O75940 FDPS-213ENST00000489003 976 ntTSL 213.47□□□□□ -0.256e-7■■■□□ 14.6
SMNDC1O75940 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.35□□□□□ -0.276e-7■■■□□ 14.6
SMNDC1O75940 FDPS-216ENST00000491013 912 ntTSL 513.13□□□□□ -0.316e-7■■■□□ 14.6
SMNDC1O75940 FDPS-207ENST00000468479 938 ntTSL 212.43□□□□□ -0.426e-7■■■□□ 14.6
SMNDC1O75940 FDPS-219ENST00000495308 808 ntTSL 212.12□□□□□ -0.476e-7■■■□□ 14.6
SMNDC1O75940 FDPS-204ENST00000461507 1022 ntTSL 211.39□□□□□ -0.596e-7■■■□□ 14.6
SMNDC1O75940 FDPS-211ENST00000477057 741 ntTSL 211.39□□□□□ -0.596e-7■■■□□ 14.6
SMNDC1O75940 FDPS-206ENST00000467076 1178 ntAPPRIS ALT1 TSL 3 BASIC11.31□□□□□ -0.66e-7■■■□□ 14.6
SMNDC1O75940 FDPS-220ENST00000611010 1196 ntTSL 5 BASIC10.63□□□□□ -0.716e-7■■■□□ 14.6
SMNDC1O75940 FDPS-209ENST00000471117 630 ntTSL 37.66□□□□□ -1.186e-7■■■□□ 14.6
SMNDC1O75940 PLCG1-212ENST00000492148 597 ntTSL 212.26□□□□□ -0.455e-9■■■□□ 14.6
SMNDC1O75940 IARS-213ENST00000627121 4587 ntTSL 5 BASIC7.42□□□□□ -1.222e-7■■■□□ 14.6
SMNDC1O75940 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.312e-7■■■□□ 14.6
SMNDC1O75940 IARS-205ENST00000443024 4341 ntTSL 5 BASIC6.66□□□□□ -1.342e-7■■■□□ 14.6
SMNDC1O75940 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC6.46□□□□□ -1.372e-7■■■□□ 14.6
SMNDC1O75940 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.23■□□□□ 0.834e-6■■■□□ 14.6
SMNDC1O75940 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.354e-6■■■□□ 14.6
SMNDC1O75940 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.094e-6■■■□□ 14.6
SMNDC1O75940 RBM3-201ENST00000354480 1884 ntTSL 2 BASIC11.87□□□□□ -0.512e-23■■■□□ 14.6
SMNDC1O75940 SNORD12-201ENST00000391002 90 ntBASIC1.59□□□□□ -2.151e-323■■□□□ 14.5
SMNDC1O75940 CPNE7-208ENST00000566398 672 ntTSL 317.07■□□□□ 0.321e-6■■□□□ 14.5
SMNDC1O75940 CPNE7-209ENST00000568977 682 ntTSL 516.75■□□□□ 0.271e-6■■□□□ 14.5
SMNDC1O75940 CPNE7-204ENST00000526232 488 ntTSL 316.24■□□□□ 0.191e-6■■□□□ 14.5
SMNDC1O75940 CPNE7-207ENST00000564421 517 ntTSL 315.2■□□□□ 0.021e-6■■□□□ 14.5
SMNDC1O75940 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.31■□□□□ 0.361e-6■■□□□ 14.5
SMNDC1O75940 SRSF11-204ENST00000395136 1408 ntTSL 1 (best)23.37■■□□□ 1.332e-37■■□□□ 14.5
SMNDC1O75940 SRSF11-211ENST00000473950 796 ntTSL 521.54■■□□□ 1.042e-37■■□□□ 14.5
SMNDC1O75940 SRSF11-212ENST00000475204 760 ntTSL 520.46■□□□□ 0.872e-37■■□□□ 14.5
SMNDC1O75940 TCF25-224ENST00000570116 1947 ntTSL 517.6■□□□□ 0.413e-7■■□□□ 14.5
SMNDC1O75940 ADD1-222ENST00000536424 594 ntTSL 514.05□□□□□ -0.161e-21■■□□□ 14.5
SMNDC1O75940 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.5■■□□□ 1.192e-10■■□□□ 14.5
SMNDC1O75940 AKT2-203ENST00000391844 1795 ntTSL 1 (best)21.66■■□□□ 1.062e-10■■□□□ 14.5
SMNDC1O75940 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.41■■□□□ 1.022e-10■■□□□ 14.5
SMNDC1O75940 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 12e-10■■□□□ 14.5
SMNDC1O75940 AKT2-240ENST00000584288 1706 ntTSL 218.24■□□□□ 0.512e-10■■□□□ 14.5
SMNDC1O75940 AKT2-230ENST00000578282 305 ntTSL 317.05■□□□□ 0.322e-10■■□□□ 14.5
SMNDC1O75940 AKT2-225ENST00000496089 982 ntTSL 515.79■□□□□ 0.122e-10■■□□□ 14.5
SMNDC1O75940 AKT2-232ENST00000578615 877 ntTSL 515□□□□□ -0.012e-10■■□□□ 14.5
SMNDC1O75940 AKT2-237ENST00000580878 709 ntTSL 314.64□□□□□ -0.072e-10■■□□□ 14.5
SMNDC1O75940 AKT2-204ENST00000391845 636 ntTSL 313.73□□□□□ -0.212e-10■■□□□ 14.5
SMNDC1O75940 AKT2-217ENST00000480878 506 ntTSL 313.73□□□□□ -0.212e-10■■□□□ 14.5
SMNDC1O75940 AKT2-216ENST00000476266 3309 ntTSL 513.66□□□□□ -0.222e-10■■□□□ 14.5
SMNDC1O75940 AKT2-218ENST00000483166 4454 ntTSL 213.51□□□□□ -0.252e-10■■□□□ 14.5
SMNDC1O75940 AKT2-235ENST00000579345 561 ntTSL 213.49□□□□□ -0.252e-10■■□□□ 14.5
SMNDC1O75940 AKT2-220ENST00000486647 457 ntTSL 313.49□□□□□ -0.252e-10■■□□□ 14.5
SMNDC1O75940 AKT2-201ENST00000311278 1393 ntTSL 1 (best) BASIC11.23□□□□□ -0.612e-10■■□□□ 14.5
SMNDC1O75940 AKT2-231ENST00000578310 158 ntTSL 33.94□□□□□ -1.782e-10■■□□□ 14.5
SMNDC1O75940 RPL4-216ENST00000569438 565 ntTSL 512.96□□□□□ -0.334e-40■■□□□ 14.4
SMNDC1O75940 RPL4-212ENST00000566622 817 ntTSL 212.29□□□□□ -0.444e-40■■□□□ 14.4
SMNDC1O75940 RPL4-201ENST00000307961 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.554e-40■■□□□ 14.4
SMNDC1O75940 RPL4-214ENST00000567229 2003 ntTSL 510.72□□□□□ -0.694e-40■■□□□ 14.4
SMNDC1O75940 RPL4-215ENST00000568588 1864 ntTSL 2 BASIC9.87□□□□□ -0.834e-40■■□□□ 14.4
SMNDC1O75940 RPL4-202ENST00000561554 580 ntTSL 49.81□□□□□ -0.844e-40■■□□□ 14.4
SMNDC1O75940 RPL4-217ENST00000569696 569 ntTSL 59.7□□□□□ -0.864e-40■■□□□ 14.4
SMNDC1O75940 RPL4-213ENST00000566624 819 ntTSL 29.7□□□□□ -0.864e-40■■□□□ 14.4
SMNDC1O75940 RPL4-205ENST00000564439 582 ntTSL 39.49□□□□□ -0.894e-40■■□□□ 14.4
SMNDC1O75940 RPL4-210ENST00000566039 1099 ntTSL 27.9□□□□□ -1.144e-40■■□□□ 14.4
SMNDC1O75940 RPL4-203ENST00000561775 1396 ntTSL 57.28□□□□□ -1.244e-40■■□□□ 14.4
SMNDC1O75940 SNORD16-201ENST00000362803 99 ntBASIC5.68□□□□□ -1.54e-40■■□□□ 14.4
Retrieved 100 of 11,362 protein–RNA pairs in 204.9 ms