RNA–Protein interactions for RNA: ENST00000460428.5

SFPQ-202, Transcript of splicing factor proline and glutamine rich, humanhuman

TSL 2

Gene SFPQ, Length 464 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQ-202ENST00000460428 NISCHQ9Y2I1 1504 aa18.21■□□□□ 0.51
SFPQ-202ENST00000460428 CCDC180Q9P1Z9 1646 aa15.87■□□□□ 0.13
SFPQ-202ENST00000460428 ZCCHC6Q5VYS8 1495 aaKnown RBP15.33■□□□□ 0.04
SFPQ-202ENST00000460428 DCAF1Q9Y4B6 1507 aa15.16■□□□□ 0.02
SFPQ-202ENST00000460428 MYO15BQ96JP2 1530 aa14.97□□□□□ -0.01
SFPQ-202ENST00000460428 DCAF8L2P0C7V8 631 aa14.79□□□□□ -0.04
SFPQ-202ENST00000460428 ABCC9O60706 1549 aa14.77□□□□□ -0.04
SFPQ-202ENST00000460428 NACADO15069 1562 aa14.77□□□□□ -0.05
SFPQ-202ENST00000460428 SHROOM4Q9ULL8 1493 aa14.69□□□□□ -0.06
SFPQ-202ENST00000460428 RB1CC1Q8TDY2 1594 aa14.57□□□□□ -0.08
SFPQ-202ENST00000460428 SCRIBQ14160 1630 aa14.45□□□□□ -0.1
SFPQ-202ENST00000460428 UNC13AQ9UPW8 1703 aa14.24□□□□□ -0.13
SFPQ-202ENST00000460428 SUPT5HO00267 1087 aaKnown RBP14.21□□□□□ -0.13
SFPQ-202ENST00000460428 RSF1Q96T23 1441 aaPredicted RBP14.15□□□□□ -0.14
SFPQ-202ENST00000460428 BICRAQ9NZM4 1560 aa14.14□□□□□ -0.15
SFPQ-202ENST00000460428 CECR2Q9BXF3 1484 aa14.09□□□□□ -0.15
SFPQ-202ENST00000460428 BAZ1AQ9NRL2 1556 aaPredicted RBP14.05□□□□□ -0.16
SFPQ-202ENST00000460428 MROH2BQ7Z745 1585 aa14.03□□□□□ -0.16
SFPQ-202ENST00000460428 SMARCA4P51532 1647 aa13.96□□□□□ -0.17
SFPQ-202ENST00000460428 PABPN1Q86U42 306 aaKnown RBP eCLIP13.93□□□□□ -0.18
SFPQ-202ENST00000460428 WIZO95785 1651 aa13.89□□□□□ -0.19
SFPQ-202ENST00000460428 PEG3Q9GZU2 1588 aa13.88□□□□□ -0.19
SFPQ-202ENST00000460428 TOP2AP11388 1531 aaKnown RBP13.8□□□□□ -0.2
SFPQ-202ENST00000460428 CHIC1Q5VXU3 224 aa13.77□□□□□ -0.21
SFPQ-202ENST00000460428 ATAD2BQ9ULI0 1458 aa13.73□□□□□ -0.21
SFPQ-202ENST00000460428 SMARCA2P51531 1590 aa13.72□□□□□ -0.21
SFPQ-202ENST00000460428 EIF4G1Q04637 1599 aaKnown RBP13.68□□□□□ -0.22
SFPQ-202ENST00000460428 CCDC88BA6NC98 1476 aa13.65□□□□□ -0.22
SFPQ-202ENST00000460428 NCAPD3P42695 1498 aa13.64□□□□□ -0.23
SFPQ-202ENST00000460428 HMGXB3Q12766 1538 aa13.61□□□□□ -0.23
SFPQ-202ENST00000460428 BAZ1BQ9UIG0 1483 aaKnown RBP13.6□□□□□ -0.23
SFPQ-202ENST00000460428 CC2D2AQ9P2K1 1620 aa13.44□□□□□ -0.26
SFPQ-202ENST00000460428 TRIM41Q8WV44 630 aa13.43□□□□□ -0.26
SFPQ-202ENST00000460428 CFTRP13569 1480 aa13.34□□□□□ -0.27
SFPQ-202ENST00000460428 ABCC8Q09428 1581 aa13.31□□□□□ -0.28
SFPQ-202ENST00000460428 WRNQ14191 1432 aaPredicted RBP eCLIP13.28□□□□□ -0.28
SFPQ-202ENST00000460428 CADPSQ9ULU8 1353 aa13.25□□□□□ -0.29
SFPQ-202ENST00000460428 PRDM2Q13029 1718 aa13.25□□□□□ -0.29
SFPQ-202ENST00000460428 EEA1Q15075 1411 aa13.21□□□□□ -0.3
SFPQ-202ENST00000460428 SYNJ1O43426 1573 aa13.2□□□□□ -0.3
SFPQ-202ENST00000460428 TOP2BQ02880 1626 aa13.2□□□□□ -0.3
SFPQ-202ENST00000460428 BIVM-ERCC5R4GMW8 1640 aa13.19□□□□□ -0.3
SFPQ-202ENST00000460428 LOC105371045A0A1W2PR82 267 aa13.16□□□□□ -0.3
SFPQ-202ENST00000460428 LAMC3Q9Y6N6 1575 aa13.13□□□□□ -0.31
SFPQ-202ENST00000460428 CUX1P39880 1505 aa13.11□□□□□ -0.31
SFPQ-202ENST00000460428 SOGA1O94964 1423 aa13.11□□□□□ -0.31
SFPQ-202ENST00000460428 FAM9AQ8IZU1 332 aaPredicted RBP13.07□□□□□ -0.32
SFPQ-202ENST00000460428 FANCD2Q9BXW9 1451 aa13.06□□□□□ -0.32
SFPQ-202ENST00000460428 CSRNP3Q8WYN3 585 aa13.06□□□□□ -0.32
SFPQ-202ENST00000460428 RUSC2Q8N2Y8 1516 aa13.05□□□□□ -0.32
SFPQ-202ENST00000460428 NESP48681 1621 aa13.02□□□□□ -0.33
SFPQ-202ENST00000460428 DNAJC5BQ9UF47 199 aa13.01□□□□□ -0.33
SFPQ-202ENST00000460428 PDS5BQ9NTI5 1447 aa13□□□□□ -0.33
SFPQ-202ENST00000460428 KIF21BO75037 1637 aa12.99□□□□□ -0.33
SFPQ-202ENST00000460428 DNMBPQ6XZF7 1577 aa12.98□□□□□ -0.33
SFPQ-202ENST00000460428 TNIKQ9UKE5 1360 aa12.97□□□□□ -0.33
SFPQ-202ENST00000460428 CEP164Q9UPV0 1460 aa12.97□□□□□ -0.33
SFPQ-202ENST00000460428 GOLGA3Q08378 1498 aa12.96□□□□□ -0.34
SFPQ-202ENST00000460428 KIF27Q86VH2 1401 aa12.96□□□□□ -0.34
SFPQ-202ENST00000460428 TOPBP1Q92547 1522 aa12.94□□□□□ -0.34
SFPQ-202ENST00000460428 FGD5Q6ZNL6 1462 aa12.94□□□□□ -0.34
SFPQ-202ENST00000460428 PRXQ9BXM0 1461 aa12.93□□□□□ -0.34
SFPQ-202ENST00000460428 ERICH3Q5RHP9 1530 aa12.92□□□□□ -0.34
SFPQ-202ENST00000460428 URB2Q14146 1524 aaKnown RBP12.9□□□□□ -0.34
SFPQ-202ENST00000460428 POLA1P09884 1462 aaPredicted RBP12.89□□□□□ -0.35
SFPQ-202ENST00000460428 ABCA10Q8WWZ4 1543 aa12.88□□□□□ -0.35
SFPQ-202ENST00000460428 KIF21AQ7Z4S6 1674 aa12.87□□□□□ -0.35
SFPQ-202ENST00000460428 CUX2O14529 1486 aa12.85□□□□□ -0.35
SFPQ-202ENST00000460428 IGF1RP08069 1367 aa12.85□□□□□ -0.35
SFPQ-202ENST00000460428 RAPGEF2Q9Y4G8 1499 aa12.85□□□□□ -0.35
SFPQ-202ENST00000460428 CEP162Q5TB80 1403 aa12.84□□□□□ -0.35
SFPQ-202ENST00000460428 WDR97A6NE52 1622 aa12.82□□□□□ -0.36
SFPQ-202ENST00000460428 MRC2Q9UBG0 1479 aa12.82□□□□□ -0.36
SFPQ-202ENST00000460428 UBTFP17480 764 aaKnown RBP12.81□□□□□ -0.36
SFPQ-202ENST00000460428 RAD54L2Q9Y4B4 1467 aa12.8□□□□□ -0.36
SFPQ-202ENST00000460428 WDR62O43379 1518 aa12.78□□□□□ -0.36
SFPQ-202ENST00000460428 EHMT2Q96KQ7 1210 aa12.77□□□□□ -0.37
SFPQ-202ENST00000460428 TARBP1Q13395 1621 aaKnown RBP12.77□□□□□ -0.37
SFPQ-202ENST00000460428 CARMIL1Q5VZK9 1371 aa12.76□□□□□ -0.37
SFPQ-202ENST00000460428 ABCA5Q8WWZ7 1642 aa12.76□□□□□ -0.37
SFPQ-202ENST00000460428 CUL7Q14999 1698 aa12.73□□□□□ -0.37
SFPQ-202ENST00000460428 CLIP1P30622 1438 aa12.73□□□□□ -0.37
SFPQ-202ENST00000460428 TRIM26Q12899 539 aaPredicted RBP12.7□□□□□ -0.38
SFPQ-202ENST00000460428 GAPVD1Q14C86 1478 aa12.7□□□□□ -0.38
SFPQ-202ENST00000460428 THOC2Q8NI27 1593 aaKnown RBP12.69□□□□□ -0.38
SFPQ-202ENST00000460428 IFT140Q96RY7 1462 aa12.69□□□□□ -0.38
SFPQ-202ENST00000460428 VPS8Q8N3P4 1428 aa12.66□□□□□ -0.38
SFPQ-202ENST00000460428 TDRD9Q8NDG6 1382 aaKnown RBP12.66□□□□□ -0.38
SFPQ-202ENST00000460428 ERCC6Q03468 1493 aa12.65□□□□□ -0.38
SFPQ-202ENST00000460428 ARAP1Q96P48 1450 aa12.61□□□□□ -0.39
SFPQ-202ENST00000460428 ARHGAP35Q9NRY4 1499 aa12.61□□□□□ -0.39
SFPQ-202ENST00000460428 PCGF6Q9BYE7 350 aa12.61□□□□□ -0.39
SFPQ-202ENST00000460428 GRIN2BQ13224 1484 aa12.6□□□□□ -0.39
SFPQ-202ENST00000460428 PBRM1Q86U86 1689 aa12.6□□□□□ -0.39
SFPQ-202ENST00000460428 FHAD1B1AJZ9 1412 aa12.59□□□□□ -0.39
SFPQ-202ENST00000460428 AQRO60306 1485 aaKnown RBP eCLIP12.58□□□□□ -0.42e-8■■■□□ 19.1
SFPQ-202ENST00000460428 CTTNBP2Q8WZ74 1663 aa12.57□□□□□ -0.4
SFPQ-202ENST00000460428 ADAMTS12P58397 1594 aa12.56□□□□□ -0.4
SFPQ-202ENST00000460428 EFCAB5A4FU69 1503 aa12.56□□□□□ -0.4
SFPQ-202ENST00000460428 ZNF608Q9ULD9 1512 aaPredicted RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms