RNA–Protein interactions for RNA: ENST00000333188.9

COPB2-201, Transcript of coatomer protein complex subunit beta 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB2, Length 3,360 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB2-201ENST00000333188 NISCHQ9Y2I1 1504 aa18.56■□□□□ 0.56
COPB2-201ENST00000333188 DCAF8L2P0C7V8 631 aa16.85■□□□□ 0.29
COPB2-201ENST00000333188 SHROOM4Q9ULL8 1493 aa16.58■□□□□ 0.24
COPB2-201ENST00000333188 SUPT5HO00267 1087 aaKnown RBP16.2■□□□□ 0.18
COPB2-201ENST00000333188 ABCC9O60706 1549 aa15.61■□□□□ 0.09
COPB2-201ENST00000333188 ZCCHC6Q5VYS8 1495 aaKnown RBP15.51■□□□□ 0.07
COPB2-201ENST00000333188 CCDC180Q9P1Z9 1646 aa15.48■□□□□ 0.07
COPB2-201ENST00000333188 EHMT2Q96KQ7 1210 aa15.36■□□□□ 0.05
COPB2-201ENST00000333188 PABPN1Q86U42 306 aaKnown RBP eCLIP15.18■□□□□ 0.02
COPB2-201ENST00000333188 FAM9AQ8IZU1 332 aaPredicted RBP15.14■□□□□ 0.01
COPB2-201ENST00000333188 SCRIBQ14160 1630 aa15.14■□□□□ 0.01
COPB2-201ENST00000333188 CHIC1Q5VXU3 224 aa15.09■□□□□ 0.01
COPB2-201ENST00000333188 LOC105371045A0A1W2PR82 267 aa14.98□□□□□ -0.01
COPB2-201ENST00000333188 TRIM41Q8WV44 630 aa14.88□□□□□ -0.03
COPB2-201ENST00000333188 DCAF1Q9Y4B6 1507 aa14.81□□□□□ -0.04
COPB2-201ENST00000333188 CECR2Q9BXF3 1484 aa14.79□□□□□ -0.04
COPB2-201ENST00000333188 RSF1Q96T23 1441 aaPredicted RBP14.74□□□□□ -0.05
COPB2-201ENST00000333188 MYO15BQ96JP2 1530 aa14.73□□□□□ -0.05
COPB2-201ENST00000333188 PCGF6Q9BYE7 350 aa14.7□□□□□ -0.06
COPB2-201ENST00000333188 TTBK1Q5TCY1 1321 aaPredicted RBP14.69□□□□□ -0.06
COPB2-201ENST00000333188 PPARGC1BQ86YN6 1023 aaKnown RBP14.68□□□□□ -0.06
COPB2-201ENST00000333188 NACADO15069 1562 aa14.66□□□□□ -0.06
COPB2-201ENST00000333188 RANGAP1P46060 587 aaPredicted RBP14.63□□□□□ -0.07
COPB2-201ENST00000333188 RB1CC1Q8TDY2 1594 aa14.62□□□□□ -0.07
COPB2-201ENST00000333188 MROH2BQ7Z745 1585 aa14.56□□□□□ -0.08
COPB2-201ENST00000333188 WIZO95785 1651 aa14.42□□□□□ -0.1
COPB2-201ENST00000333188 UBTFP17480 764 aaKnown RBP14.4□□□□□ -0.1
COPB2-201ENST00000333188 BAZ1AQ9NRL2 1556 aaPredicted RBP14.27□□□□□ -0.13
COPB2-201ENST00000333188 CCDC88BA6NC98 1476 aa14.21□□□□□ -0.13
COPB2-201ENST00000333188 ABCC8Q09428 1581 aa14.19□□□□□ -0.14
COPB2-201ENST00000333188 SMARCA4P51532 1647 aa14.13□□□□□ -0.15
COPB2-201ENST00000333188 TRIM26Q12899 539 aaPredicted RBP14.12□□□□□ -0.15
COPB2-201ENST00000333188 BICRAQ9NZM4 1560 aa14.11□□□□□ -0.15
COPB2-201ENST00000333188 BAZ1BQ9UIG0 1483 aaKnown RBP14.1□□□□□ -0.15
COPB2-201ENST00000333188 CSRNP3Q8WYN3 585 aa14.1□□□□□ -0.15
COPB2-201ENST00000333188 UNC13AQ9UPW8 1703 aa14.1□□□□□ -0.15
COPB2-201ENST00000333188 SOGA1O94964 1423 aa14.08□□□□□ -0.15
COPB2-201ENST00000333188 ATP1B4Q9UN42 357 aaPredicted RBP14.06□□□□□ -0.16
COPB2-201ENST00000333188 HRCP23327 699 aa14.04□□□□□ -0.16
COPB2-201ENST00000333188 ATAD2BQ9ULI0 1458 aa14.03□□□□□ -0.16
COPB2-201ENST00000333188 TOP2AP11388 1531 aaKnown RBP14.02□□□□□ -0.17
COPB2-201ENST00000333188 RUSC2Q8N2Y8 1516 aa14.01□□□□□ -0.17
COPB2-201ENST00000333188 APLP2Q06481 763 aa14□□□□□ -0.17
COPB2-201ENST00000333188 DNAJC5BQ9UF47 199 aa14□□□□□ -0.17
COPB2-201ENST00000333188 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.99□□□□□ -0.17
COPB2-201ENST00000333188 WRNQ14191 1432 aaPredicted RBP eCLIP13.97□□□□□ -0.17
COPB2-201ENST00000333188 SMARCA2P51531 1590 aa13.97□□□□□ -0.17
COPB2-201ENST00000333188 HNRNPUL2Q1KMD3 747 aaKnown RBP13.94□□□□□ -0.18
COPB2-201ENST00000333188 P3H3Q8IVL6 736 aa13.93□□□□□ -0.18
COPB2-201ENST00000333188 CCER1Q8TC90 406 aaPredicted RBP13.93□□□□□ -0.18
COPB2-201ENST00000333188 ITGAEP38570 1179 aa13.89□□□□□ -0.19
COPB2-201ENST00000333188 EIF4G1Q04637 1599 aaKnown RBP13.84□□□□□ -0.19
COPB2-201ENST00000333188 CEP162Q5TB80 1403 aa13.8□□□□□ -0.2
COPB2-201ENST00000333188 ARID3CA6NKF2 412 aa13.78□□□□□ -0.2
COPB2-201ENST00000333188 SYNJ1O43426 1573 aa13.69□□□□□ -0.22
COPB2-201ENST00000333188 NCAPD3P42695 1498 aa13.69□□□□□ -0.22
COPB2-201ENST00000333188 FBLN2P98095 1184 aa13.69□□□□□ -0.22
COPB2-201ENST00000333188 NESP48681 1621 aa13.68□□□□□ -0.22
COPB2-201ENST00000333188 CLIP1P30622 1438 aa13.68□□□□□ -0.22
COPB2-201ENST00000333188 RAPGEF2Q9Y4G8 1499 aa13.67□□□□□ -0.22
COPB2-201ENST00000333188 TNIKQ9UKE5 1360 aa13.66□□□□□ -0.22
COPB2-201ENST00000333188 CADPSQ9ULU8 1353 aa13.66□□□□□ -0.22
COPB2-201ENST00000333188 GOLGA3Q08378 1498 aa13.65□□□□□ -0.22
COPB2-201ENST00000333188 CC2D2AQ9P2K1 1620 aa13.63□□□□□ -0.23
COPB2-201ENST00000333188 CUX2O14529 1486 aa13.62□□□□□ -0.23
COPB2-201ENST00000333188 TDRD9Q8NDG6 1382 aaKnown RBP13.6□□□□□ -0.23
COPB2-201ENST00000333188 KIF27Q86VH2 1401 aa13.58□□□□□ -0.23
COPB2-201ENST00000333188 CEP164Q9UPV0 1460 aa13.58□□□□□ -0.24
COPB2-201ENST00000333188 EEA1Q15075 1411 aa13.58□□□□□ -0.24
COPB2-201ENST00000333188 FAM50AQ14320 339 aaKnown RBP13.58□□□□□ -0.24
COPB2-201ENST00000333188 KANK4Q5T7N3 995 aaPredicted RBP13.57□□□□□ -0.24
COPB2-201ENST00000333188 PEG3Q9GZU2 1588 aa13.57□□□□□ -0.24
COPB2-201ENST00000333188 ZEB1P37275 1124 aaPredicted RBP13.56□□□□□ -0.24
COPB2-201ENST00000333188 RAD54L2Q9Y4B4 1467 aa13.55□□□□□ -0.24
COPB2-201ENST00000333188 CFTRP13569 1480 aa13.53□□□□□ -0.24
COPB2-201ENST00000333188 FANCD2Q9BXW9 1451 aa13.53□□□□□ -0.24
COPB2-201ENST00000333188 CUX1P39880 1505 aa13.52□□□□□ -0.24
COPB2-201ENST00000333188 CARMIL1Q5VZK9 1371 aa13.51□□□□□ -0.25
COPB2-201ENST00000333188 HMGXB3Q12766 1538 aa13.47□□□□□ -0.25
COPB2-201ENST00000333188 FGD5Q6ZNL6 1462 aa13.47□□□□□ -0.25
COPB2-201ENST00000333188 IGF1RP08069 1367 aa13.46□□□□□ -0.25
COPB2-201ENST00000333188 TOP2BQ02880 1626 aa13.4□□□□□ -0.26
COPB2-201ENST00000333188 YTHDC1Q96MU7 727 aaKnown RBP13.4□□□□□ -0.26
COPB2-201ENST00000333188 NEUROD1Q13562 356 aa13.39□□□□□ -0.27
COPB2-201ENST00000333188 VPS8Q8N3P4 1428 aa13.39□□□□□ -0.27
COPB2-201ENST00000333188 PDS5BQ9NTI5 1447 aa13.35□□□□□ -0.27
COPB2-201ENST00000333188 ERCC6Q03468 1493 aa13.35□□□□□ -0.27
COPB2-201ENST00000333188 CHMP7Q8WUX9 453 aaPredicted RBP13.34□□□□□ -0.27
COPB2-201ENST00000333188 CHIC2Q9UKJ5 165 aa13.34□□□□□ -0.27
COPB2-201ENST00000333188 FHOD3Q2V2M9 1422 aa13.34□□□□□ -0.27
COPB2-201ENST00000333188 AQRO60306 1485 aaKnown RBP eCLIP13.33□□□□□ -0.285e-9■■■□□ 15.4
COPB2-201ENST00000333188 ARAP1Q96P48 1450 aa13.32□□□□□ -0.28
COPB2-201ENST00000333188 POLA1P09884 1462 aaPredicted RBP13.31□□□□□ -0.28
COPB2-201ENST00000333188 PRXQ9BXM0 1461 aa13.31□□□□□ -0.28
COPB2-201ENST00000333188 KIF21BO75037 1637 aa13.31□□□□□ -0.28
COPB2-201ENST00000333188 DIEXFQ68CQ4 756 aaKnown RBP13.3□□□□□ -0.28
COPB2-201ENST00000333188 TOPBP1Q92547 1522 aa13.29□□□□□ -0.28
COPB2-201ENST00000333188 ZNF777Q9ULD5 760 aaPredicted RBP13.28□□□□□ -0.28
COPB2-201ENST00000333188 HIRIP3Q9BW71 556 aaPredicted RBP13.24□□□□□ -0.29
COPB2-201ENST00000333188 URB2Q14146 1524 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms