Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 GMPPA-207ENST00000443704 1783 ntTSL 523.11■■□□□ 1.291e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.281e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-208ENST00000455657 907 ntTSL 522.82■■□□□ 1.241e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.171e-6■■□□□ 12.9
U2AF1Q01081 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC22.14■■□□□ 1.141e-6■■□□□ 12.9
U2AF1Q01081 PFKP-205ENST00000413079 496 ntTSL 318.61■□□□□ 0.571e-6■■□□□ 12.9
U2AF1Q01081 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.471e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-210ENST00000480506 835 ntTSL 516.67■□□□□ 0.261e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-211ENST00000481170 4942 ntTSL 216.5■□□□□ 0.231e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-206ENST00000435316 786 ntTSL 515.23■□□□□ 0.031e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-218ENST00000552839 511 ntTSL 415.06■□□□□ 01e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-215ENST00000552374 1408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.071e-6■■□□□ 12.9
U2AF1Q01081 GMPPA-214ENST00000635609 569 ntTSL 514.42□□□□□ -0.11e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-203ENST00000546537 599 ntTSL 514.31□□□□□ -0.121e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-216ENST00000552800 485 ntTSL 312.9□□□□□ -0.341e-6■■□□□ 12.9
U2AF1Q01081 GRB10-213ENST00000461886 624 ntTSL 212.14□□□□□ -0.471e-6■■□□□ 12.9
U2AF1Q01081 MBNL1-208ENST00000460166 552 ntTSL 412.09□□□□□ -0.471e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-213ENST00000550831 1446 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.481e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-209ENST00000550020 572 ntTSL 411.6□□□□□ -0.551e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-217ENST00000552801 1397 ntTSL 511.58□□□□□ -0.561e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-207ENST00000549425 615 ntAPPRIS ALT2 TSL 311.11□□□□□ -0.631e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-205ENST00000547878 1716 ntTSL 210.87□□□□□ -0.671e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-201ENST00000355445 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC10.49□□□□□ -0.731e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-214ENST00000551297 660 ntTSL 310.22□□□□□ -0.771e-6■■□□□ 12.9
U2AF1Q01081 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC9.85□□□□□ -0.831e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-206ENST00000548283 3640 ntTSL 59.31□□□□□ -0.921e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC8.88□□□□□ -0.991e-6■■□□□ 12.9
U2AF1Q01081 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC8.78□□□□□ -11e-6■■□□□ 12.9
U2AF1Q01081 DNAJC6-206ENST00000483402 409 ntTSL 37.94□□□□□ -1.141e-6■■□□□ 12.9
U2AF1Q01081 DNAJC6-204ENST00000463018 546 ntTSL 37.76□□□□□ -1.171e-6■■□□□ 12.9
U2AF1Q01081 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC7.62□□□□□ -1.191e-6■■□□□ 12.9
U2AF1Q01081 TRAPPC13-206ENST00000504751 592 ntTSL 47.22□□□□□ -1.251e-6■■□□□ 12.9
U2AF1Q01081 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC7.06□□□□□ -1.281e-6■■□□□ 12.9
U2AF1Q01081 TRAPPC13-205ENST00000504243 643 ntTSL 56.43□□□□□ -1.381e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-211ENST00000550233 571 ntAPPRIS ALT2 TSL 56.32□□□□□ -1.41e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-212ENST00000550800 718 ntAPPRIS ALT2 TSL 35.77□□□□□ -1.491e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-210ENST00000550037 640 ntAPPRIS ALT2 TSL 35.43□□□□□ -1.541e-6■■□□□ 12.9
U2AF1Q01081 TRAPPC13-209ENST00000508304 729 ntTSL 25.2□□□□□ -1.581e-6■■□□□ 12.9
U2AF1Q01081 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.61e-6■■□□□ 12.9
U2AF1Q01081 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.641e-6■■□□□ 12.9
U2AF1Q01081 TMEM116-204ENST00000546962 319 ntAPPRIS ALT2 TSL 53.77□□□□□ -1.811e-6■■□□□ 12.9
U2AF1Q01081 TRAPPC13-211ENST00000512009 5994 ntTSL 21.8□□□□□ -2.121e-6■■□□□ 12.9
U2AF1Q01081 PABPC1L-208ENST00000372826 854 ntTSL 513.89□□□□□ -0.194e-12■■□□□ 12.9
U2AF1Q01081 SLC7A11-202ENST00000509248 797 ntTSL 54.41□□□□□ -1.79e-8■■□□□ 12.9
U2AF1Q01081 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.564e-6■■□□□ 12.9
U2AF1Q01081 DCTN4-213ENST00000521728 661 ntTSL 416.93■□□□□ 0.34e-6■■□□□ 12.9
U2AF1Q01081 MAPRE2-204ENST00000538170 4093 ntTSL 2 BASIC14.03□□□□□ -0.164e-6■■□□□ 12.9
U2AF1Q01081 MAPRE2-203ENST00000436190 4323 ntTSL 2 BASIC9.34□□□□□ -0.914e-6■■□□□ 12.9
U2AF1Q01081 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC8.06□□□□□ -1.124e-6■■□□□ 12.9
U2AF1Q01081 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC7.34□□□□□ -1.234e-6■■□□□ 12.9
U2AF1Q01081 ITIH3-210ENST00000495622 920 ntTSL 519.98■□□□□ 0.793e-8■■□□□ 12.9
U2AF1Q01081 KDM5A-209ENST00000543507 575 ntTSL 428.54■■■□□ 2.165e-6■■□□□ 12.9
U2AF1Q01081 KDM5A-210ENST00000544760 2338 ntTSL 223.55■■□□□ 1.365e-6■■□□□ 12.9
U2AF1Q01081 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.25e-6■■□□□ 12.9
U2AF1Q01081 IST1-218ENST00000541180 635 ntTSL 1 (best)22.09■■□□□ 1.132e-14■■□□□ 12.9
U2AF1Q01081 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC21.51■■□□□ 1.035e-6■■□□□ 12.9
U2AF1Q01081 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.635e-6■■□□□ 12.9
U2AF1Q01081 HNRNPH1-246ENST00000523449 793 ntTSL 317.4■□□□□ 0.385e-6■■□□□ 12.9
U2AF1Q01081 STAM-203ENST00000445846 740 ntTSL 416.42■□□□□ 0.225e-6■■□□□ 12.9
U2AF1Q01081 U2SURP-215ENST00000493782 588 ntTSL 1 (best)15.78■□□□□ 0.124e-11■■□□□ 12.9
U2AF1Q01081 PSMD2-211ENST00000466987 530 ntTSL 214.1□□□□□ -0.155e-6■■□□□ 12.9
U2AF1Q01081 UBQLN1-204ENST00000527373 562 ntTSL 214.01□□□□□ -0.175e-6■■□□□ 12.9
U2AF1Q01081 PSMD2-209ENST00000460628 565 ntTSL 212.51□□□□□ -0.415e-6■■□□□ 12.9
U2AF1Q01081 PSMD2-217ENST00000491149 895 ntTSL 212.32□□□□□ -0.445e-6■■□□□ 12.9
U2AF1Q01081 USP48-207ENST00000471752 445 ntTSL 310.87□□□□□ -0.675e-6■■□□□ 12.9
U2AF1Q01081 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC10.39□□□□□ -0.755e-6■■□□□ 12.9
U2AF1Q01081 DCAF6-211ENST00000489398 1727 ntTSL 210.14□□□□□ -0.795e-6■■□□□ 12.9
U2AF1Q01081 KDM5A-202ENST00000535014 551 ntTSL 48.53□□□□□ -1.045e-6■■□□□ 12.9
U2AF1Q01081 UBQLN1-206ENST00000533705 6055 ntTSL 1 (best)8.17□□□□□ -1.15e-6■■□□□ 12.9
U2AF1Q01081 BRD2-207ENST00000463639 946 ntTSL 27.89□□□□□ -1.152e-14■■□□□ 12.9
U2AF1Q01081 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.195e-6■■□□□ 12.9
U2AF1Q01081 KDM5A-204ENST00000536014 558 ntTSL 46.94□□□□□ -1.35e-6■■□□□ 12.9
U2AF1Q01081 HBP1-202ENST00000461963 581 ntTSL 56.42□□□□□ -1.385e-6■■□□□ 12.9
U2AF1Q01081 TTC37-209ENST00000510228 511 ntTSL 36.35□□□□□ -1.395e-6■■□□□ 12.9
U2AF1Q01081 UBQLN1-203ENST00000526134 475 ntTSL 35.99□□□□□ -1.455e-6■■□□□ 12.9
U2AF1Q01081 U2SURP-210ENST00000485374 470 ntTSL 45.99□□□□□ -1.454e-11■■□□□ 12.9
U2AF1Q01081 TTC37-212ENST00000513823 577 ntTSL 45.25□□□□□ -1.575e-6■■□□□ 12.9
U2AF1Q01081 KMT2C-211ENST00000490130 641 ntTSL 25.14□□□□□ -1.592e-14■■□□□ 12.9
U2AF1Q01081 U2SURP-213ENST00000491827 824 ntTSL 35.06□□□□□ -1.64e-11■■□□□ 12.9
U2AF1Q01081 HBP1-211ENST00000483809 582 ntTSL 25.02□□□□□ -1.615e-6■■□□□ 12.9
U2AF1Q01081 U2SURP-204ENST00000465175 571 ntTSL 44.87□□□□□ -1.634e-11■■□□□ 12.9
U2AF1Q01081 U2SURP-217ENST00000600150 725 ntTSL 54.87□□□□□ -1.634e-11■■□□□ 12.9
U2AF1Q01081 IST1-209ENST00000536027 823 ntTSL 34.65□□□□□ -1.672e-14■■□□□ 12.9
U2AF1Q01081 TTC37-213ENST00000514952 2102 ntTSL 1 (best)4.34□□□□□ -1.715e-6■■□□□ 12.9
U2AF1Q01081 HBP1-215ENST00000607681 476 ntTSL 24.08□□□□□ -1.765e-6■■□□□ 12.9
U2AF1Q01081 SRSF6-202ENST00000483871 1680 ntTSL 218.89■□□□□ 0.612e-19■■□□□ 12.9
U2AF1Q01081 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.577e-7■■□□□ 12.9
U2AF1Q01081 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.537e-7■■□□□ 12.9
U2AF1Q01081 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.427e-7■■□□□ 12.9
U2AF1Q01081 HNRNPH1-236ENST00000519958 885 ntTSL 516.21■□□□□ 0.192e-9■■□□□ 12.9
U2AF1Q01081 LINC01021-205ENST00000514255 545 ntTSL 3 BASIC13.4□□□□□ -0.261e-12■■□□□ 12.8
U2AF1Q01081 LARS-202ENST00000394434 4766 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.457e-8■■□□□ 12.8
U2AF1Q01081 LARS-212ENST00000510191 3737 ntTSL 2 BASIC9.27□□□□□ -0.937e-8■■□□□ 12.8
U2AF1Q01081 LARS-201ENST00000274562 2213 ntTSL 2 BASIC7.04□□□□□ -1.287e-8■■□□□ 12.8
U2AF1Q01081 USP15-216ENST00000550632 728 ntTSL 319.66■□□□□ 0.743e-7■■□□□ 12.8
U2AF1Q01081 SRSF2-211ENST00000592676 559 ntTSL 37.28□□□□□ -1.241e-10■■□□□ 12.8
U2AF1Q01081 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC22.62■■□□□ 1.216e-7■■□□□ 12.8
U2AF1Q01081 CSNK2A1-205ENST00000460062 552 ntTSL 420.03■□□□□ 0.86e-7■■□□□ 12.8
U2AF1Q01081 GCKR-204ENST00000453813 701 ntTSL 319.34■□□□□ 0.694e-10■■□□□ 12.8
U2AF1Q01081 ANKZF1-219ENST00000483188 529 ntTSL 215.41■□□□□ 0.066e-7■■□□□ 12.8
Retrieved 100 of 10,096 protein–RNA pairs in 64 ms