RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 NISCHQ9Y2I1 1504 aa20.17■□□□□ 0.82
USP48-207ENST00000471752 AEBP2Q6ZN18 517 aaPredicted RBP18.19■□□□□ 0.5
USP48-207ENST00000471752 ABCC9O60706 1549 aa18.1■□□□□ 0.49
USP48-207ENST00000471752 CCDC180Q9P1Z9 1646 aa17.87■□□□□ 0.45
USP48-207ENST00000471752 CHIC1Q5VXU3 224 aa17.31■□□□□ 0.36
USP48-207ENST00000471752 DCAF8L2P0C7V8 631 aa17.2■□□□□ 0.34
USP48-207ENST00000471752 DNAJC5BQ9UF47 199 aa17.13■□□□□ 0.33
USP48-207ENST00000471752 RB1CC1Q8TDY2 1594 aa17.06■□□□□ 0.32
USP48-207ENST00000471752 PABPN1Q86U42 306 aaKnown RBP eCLIP16.99■□□□□ 0.31
USP48-207ENST00000471752 NACADO15069 1562 aa16.96■□□□□ 0.31
USP48-207ENST00000471752 MYO15BQ96JP2 1530 aa16.7■□□□□ 0.26
USP48-207ENST00000471752 BICRAQ9NZM4 1560 aa16.7■□□□□ 0.26
USP48-207ENST00000471752 ZCCHC6Q5VYS8 1495 aaKnown RBP16.7■□□□□ 0.26
USP48-207ENST00000471752 UNC13AQ9UPW8 1703 aa16.7■□□□□ 0.26
USP48-207ENST00000471752 DCAF1Q9Y4B6 1507 aa16.55■□□□□ 0.24
USP48-207ENST00000471752 SCRIBQ14160 1630 aa16.48■□□□□ 0.23
USP48-207ENST00000471752 CC2D2AQ9P2K1 1620 aa16.26■□□□□ 0.19
USP48-207ENST00000471752 CECR2Q9BXF3 1484 aa16.24■□□□□ 0.19
USP48-207ENST00000471752 SHROOM4Q9ULL8 1493 aa16.22■□□□□ 0.19
USP48-207ENST00000471752 EIF4G1Q04637 1599 aaKnown RBP16.22■□□□□ 0.19
USP48-207ENST00000471752 NCAPD3P42695 1498 aa15.75■□□□□ 0.11
USP48-207ENST00000471752 ATAD2BQ9ULI0 1458 aa15.75■□□□□ 0.11
USP48-207ENST00000471752 SMARCA4P51532 1647 aa15.68■□□□□ 0.1
USP48-207ENST00000471752 SENP3Q9H4L4 574 aaPredicted RBP15.67■□□□□ 0.1
USP48-207ENST00000471752 MROH2BQ7Z745 1585 aa15.62■□□□□ 0.09
USP48-207ENST00000471752 NESP48681 1621 aa15.61■□□□□ 0.09
USP48-207ENST00000471752 SMARCA2P51531 1590 aa15.58■□□□□ 0.08
USP48-207ENST00000471752 BAZ1AQ9NRL2 1556 aaPredicted RBP15.56■□□□□ 0.08
USP48-207ENST00000471752 HMGXB3Q12766 1538 aa15.54■□□□□ 0.08
USP48-207ENST00000471752 BAZ1BQ9UIG0 1483 aaKnown RBP15.54■□□□□ 0.08
USP48-207ENST00000471752 DNAJC5Q9H3Z4 198 aa15.51■□□□□ 0.07
USP48-207ENST00000471752 ERCC6Q03468 1493 aa15.51■□□□□ 0.07
USP48-207ENST00000471752 PEG3Q9GZU2 1588 aa15.48■□□□□ 0.07
USP48-207ENST00000471752 PHF23Q9BUL5 403 aaPredicted RBP15.4■□□□□ 0.06
USP48-207ENST00000471752 CUX2O14529 1486 aa15.4■□□□□ 0.06
USP48-207ENST00000471752 WIZO95785 1651 aa15.39■□□□□ 0.05
USP48-207ENST00000471752 RSF1Q96T23 1441 aaPredicted RBP15.34■□□□□ 0.05
USP48-207ENST00000471752 CADPSQ9ULU8 1353 aa15.31■□□□□ 0.04
USP48-207ENST00000471752 LAMC3Q9Y6N6 1575 aa15.28■□□□□ 0.04
USP48-207ENST00000471752 THOC2Q8NI27 1593 aaKnown RBP15.27■□□□□ 0.03
USP48-207ENST00000471752 KIF21AQ7Z4S6 1674 aa15.25■□□□□ 0.03
USP48-207ENST00000471752 PDS5BQ9NTI5 1447 aa15.25■□□□□ 0.03
USP48-207ENST00000471752 CFTRP13569 1480 aa15.13■□□□□ 0.01
USP48-207ENST00000471752 MRC2Q9UBG0 1479 aa15.13■□□□□ 0.01
USP48-207ENST00000471752 TOP2AP11388 1531 aaKnown RBP15.12■□□□□ 0.01
USP48-207ENST00000471752 FANCD2Q9BXW9 1451 aa15.11■□□□□ 0.01
USP48-207ENST00000471752 CCDC88BA6NC98 1476 aa15.08■□□□□ 0
USP48-207ENST00000471752 WDR62O43379 1518 aa15.07■□□□□ 0
USP48-207ENST00000471752 CEP164Q9UPV0 1460 aa15.06■□□□□ 0
USP48-207ENST00000471752 URB2Q14146 1524 aaKnown RBP15.03■□□□□ -0
USP48-207ENST00000471752 TRIM41Q8WV44 630 aa14.91□□□□□ -0.02
USP48-207ENST00000471752 ZNF608Q9ULD9 1512 aaPredicted RBP14.88□□□□□ -0.03
USP48-207ENST00000471752 OSCARQ8IYS5 282 aa14.85□□□□□ -0.03
USP48-207ENST00000471752 TOPBP1Q92547 1522 aa14.83□□□□□ -0.04
USP48-207ENST00000471752 SUPT5HO00267 1087 aaKnown RBP14.82□□□□□ -0.04
USP48-207ENST00000471752 AQRO60306 1485 aaKnown RBP eCLIP14.77□□□□□ -0.042e-6■■□□□ 13.2
USP48-207ENST00000471752 IFT140Q96RY7 1462 aa14.77□□□□□ -0.04
USP48-207ENST00000471752 RAD54L2Q9Y4B4 1467 aa14.75□□□□□ -0.05
USP48-207ENST00000471752 PRDM2Q13029 1718 aa14.75□□□□□ -0.05
USP48-207ENST00000471752 DNMBPQ6XZF7 1577 aa14.72□□□□□ -0.05
USP48-207ENST00000471752 TDRD9Q8NDG6 1382 aaKnown RBP14.71□□□□□ -0.06
USP48-207ENST00000471752 POLA1P09884 1462 aaPredicted RBP14.7□□□□□ -0.06
USP48-207ENST00000471752 TARBP1Q13395 1621 aaKnown RBP14.68□□□□□ -0.06
USP48-207ENST00000471752 ABCC8Q09428 1581 aa14.68□□□□□ -0.06
USP48-207ENST00000471752 FBLN2P98095 1184 aa14.67□□□□□ -0.06
USP48-207ENST00000471752 SOGA1O94964 1423 aa14.66□□□□□ -0.06
USP48-207ENST00000471752 EIF4G3O43432 1585 aaKnown RBP14.64□□□□□ -0.07
USP48-207ENST00000471752 CUX1P39880 1505 aa14.64□□□□□ -0.07
USP48-207ENST00000471752 FGD5Q6ZNL6 1462 aa14.62□□□□□ -0.07
USP48-207ENST00000471752 CYB5RLQ6IPT4 315 aa14.58□□□□□ -0.08
USP48-207ENST00000471752 RIMBP3CA6NJZ7 1639 aa14.58□□□□□ -0.08
USP48-207ENST00000471752 RIMBP3BA6NNM3 1639 aa14.58□□□□□ -0.08
USP48-207ENST00000471752 RIMBP3Q9UFD9 1639 aa14.58□□□□□ -0.08
USP48-207ENST00000471752 ARHGEF11O15085 1522 aa14.56□□□□□ -0.08
USP48-207ENST00000471752 SNAPC4Q5SXM2 1469 aa14.52□□□□□ -0.08
USP48-207ENST00000471752 CHD1O14646 1710 aa14.52□□□□□ -0.09
USP48-207ENST00000471752 FOXD1Q16676 465 aa14.51□□□□□ -0.09
USP48-207ENST00000471752 CHMP7Q8WUX9 453 aaPredicted RBP14.51□□□□□ -0.09
USP48-207ENST00000471752 ARAP1Q96P48 1450 aa14.46□□□□□ -0.09
USP48-207ENST00000471752 GRIN2BQ13224 1484 aa14.45□□□□□ -0.1
USP48-207ENST00000471752 GAPVD1Q14C86 1478 aa14.44□□□□□ -0.1
USP48-207ENST00000471752 ABCA10Q8WWZ4 1543 aa14.41□□□□□ -0.1
USP48-207ENST00000471752 SYNJ1O43426 1573 aa14.4□□□□□ -0.1
USP48-207ENST00000471752 WDR97A6NE52 1622 aa14.4□□□□□ -0.1
USP48-207ENST00000471752 SYNJ2O15056 1496 aa14.39□□□□□ -0.11
USP48-207ENST00000471752 MAGI1Q96QZ7 1491 aaPredicted RBP14.39□□□□□ -0.11
USP48-207ENST00000471752 CLASP1Q7Z460 1538 aa14.39□□□□□ -0.11
USP48-207ENST00000471752 WRNQ14191 1432 aaPredicted RBP eCLIP14.39□□□□□ -0.11
USP48-207ENST00000471752 ABCA5Q8WWZ7 1642 aa14.35□□□□□ -0.11
USP48-207ENST00000471752 TRHP20396 242 aaPredicted RBP14.35□□□□□ -0.11
USP48-207ENST00000471752 TOP2BQ02880 1626 aa14.33□□□□□ -0.12
USP48-207ENST00000471752 PBRM1Q86U86 1689 aa14.32□□□□□ -0.12
USP48-207ENST00000471752 ERCC6L2Q5T890 1561 aa14.31□□□□□ -0.12
USP48-207ENST00000471752 BIVM-ERCC5R4GMW8 1640 aa14.3□□□□□ -0.12
USP48-207ENST00000471752 GRIN2AQ12879 1464 aa14.28□□□□□ -0.12
USP48-207ENST00000471752 CEP170Q5SW79 1584 aa14.25□□□□□ -0.13
USP48-207ENST00000471752 FHAD1B1AJZ9 1412 aa14.24□□□□□ -0.13
USP48-207ENST00000471752 NUP160Q12769 1436 aa14.24□□□□□ -0.13
USP48-207ENST00000471752 ADAMTS12P58397 1594 aa14.24□□□□□ -0.13
USP48-207ENST00000471752 IGF1RP08069 1367 aa14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms