RNA–Protein interactions for RNA: ENST00000438419.6

TRAPPC13-204, Transcript of trafficking protein particle complex 13, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene TRAPPC13, Length 1,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC13-204ENST00000438419 AEBP2Q6ZN18 517 aaPredicted RBP21.84■■□□□ 1.09
TRAPPC13-204ENST00000438419 CHIC1Q5VXU3 224 aa20.51■□□□□ 0.87
TRAPPC13-204ENST00000438419 SENP3Q9H4L4 574 aaPredicted RBP18.85■□□□□ 0.61
TRAPPC13-204ENST00000438419 PHF23Q9BUL5 403 aaPredicted RBP18.47■□□□□ 0.55
TRAPPC13-204ENST00000438419 POTEDQ86YR6 584 aa17.94■□□□□ 0.46
TRAPPC13-204ENST00000438419 FOXD1Q16676 465 aa17.64■□□□□ 0.41
TRAPPC13-204ENST00000438419 MSH5O43196 834 aa16.9■□□□□ 0.3
TRAPPC13-204ENST00000438419 PIAS4Q8N2W9 510 aaPredicted RBP16.32■□□□□ 0.2
TRAPPC13-204ENST00000438419 PLPPR3Q6T4P5 718 aa15.82■□□□□ 0.12
TRAPPC13-204ENST00000438419 PPP6R1Q9UPN7 881 aa15.78■□□□□ 0.12
TRAPPC13-204ENST00000438419 ADRA2BP18089 450 aa15.72■□□□□ 0.11
TRAPPC13-204ENST00000438419 CACNB1Q02641 598 aaPredicted RBP15.07■□□□□ 0
TRAPPC13-204ENST00000438419 DMRT2Q9Y5R5 561 aa14.78□□□□□ -0.04
TRAPPC13-204ENST00000438419 MAPK8IP2Q13387 824 aaPredicted RBP14.7□□□□□ -0.06
TRAPPC13-204ENST00000438419 SCAF1Q9H7N4 1312 aaKnown RBP14.46□□□□□ -0.09
TRAPPC13-204ENST00000438419 DCAF8L1A6NGE4 600 aa14.33□□□□□ -0.11
TRAPPC13-204ENST00000438419 RNF39Q9H2S5 420 aa14.28□□□□□ -0.12
TRAPPC13-204ENST00000438419 C1QBPQ07021 282 aaKnown RBP14.07□□□□□ -0.16
TRAPPC13-204ENST00000438419 PPP4R3CPQ6ZMV5 832 aa13.98□□□□□ -0.17
TRAPPC13-204ENST00000438419 POTEHQ6S545 545 aa13.9□□□□□ -0.18
TRAPPC13-204ENST00000438419 HOXD11P31277 338 aaPredicted RBP13.88□□□□□ -0.19
TRAPPC13-204ENST00000438419 KCNA4P22459 653 aa13.65□□□□□ -0.22
TRAPPC13-204ENST00000438419 RNF216Q9NWF9 866 aaPredicted RBP13.56□□□□□ -0.24
TRAPPC13-204ENST00000438419 CNKSR2Q8WXI2 1034 aa13.56□□□□□ -0.24
TRAPPC13-204ENST00000438419 DNAJC5BQ9UF47 199 aa13.56□□□□□ -0.24
TRAPPC13-204ENST00000438419 NCBP3Q53F19 620 aaKnown RBP13.55□□□□□ -0.24
TRAPPC13-204ENST00000438419 NPM3O75607 178 aaKnown RBP13.41□□□□□ -0.26
TRAPPC13-204ENST00000438419 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.31□□□□□ -0.28
TRAPPC13-204ENST00000438419 DSG3P32926 999 aa13.09□□□□□ -0.31
TRAPPC13-204ENST00000438419 CAPN15O75808 1086 aa13.05□□□□□ -0.32
TRAPPC13-204ENST00000438419 SLC4A1APQ9BWU0 796 aaKnown RBP12.96□□□□□ -0.33
TRAPPC13-204ENST00000438419 SPINK5Q9NQ38 1064 aaPredicted RBP12.95□□□□□ -0.34
TRAPPC13-204ENST00000438419 U3KPZ7 1027 aaPredicted RBP12.86□□□□□ -0.35
TRAPPC13-204ENST00000438419 SLC4A2P04920 1241 aa12.71□□□□□ -0.38
TRAPPC13-204ENST00000438419 ABCB7O75027 752 aa12.63□□□□□ -0.39
TRAPPC13-204ENST00000438419 CHRDL2Q6WN34 429 aa12.62□□□□□ -0.39
TRAPPC13-204ENST00000438419 SP7Q8TDD2 431 aaPredicted RBP12.62□□□□□ -0.39
TRAPPC13-204ENST00000438419 TRHP20396 242 aaPredicted RBP12.62□□□□□ -0.39
TRAPPC13-204ENST00000438419 ZBTB22O15209 634 aa12.61□□□□□ -0.39
TRAPPC13-204ENST00000438419 RBM42Q9BTD8 480 aaKnown RBP12.59□□□□□ -0.39
TRAPPC13-204ENST00000438419 EHMT2Q96KQ7 1210 aa12.58□□□□□ -0.4
TRAPPC13-204ENST00000438419 ZNF219Q9P2Y4 722 aaPredicted RBP12.54□□□□□ -0.4
TRAPPC13-204ENST00000438419 FOXD4L1Q9NU39 408 aa12.53□□□□□ -0.4
TRAPPC13-204ENST00000438419 APLP2Q06481 763 aa12.52□□□□□ -0.41
TRAPPC13-204ENST00000438419 CSRNP3Q8WYN3 585 aa12.5□□□□□ -0.41
TRAPPC13-204ENST00000438419 MYCNP04198 464 aaPredicted RBP12.36□□□□□ -0.43
TRAPPC13-204ENST00000438419 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.27□□□□□ -0.45
TRAPPC13-204ENST00000438419 HNRNPUL2Q1KMD3 747 aaKnown RBP12.27□□□□□ -0.45
TRAPPC13-204ENST00000438419 HAX1O00165 279 aa12.2□□□□□ -0.46
TRAPPC13-204ENST00000438419 SAMD1Q6SPF0 538 aaPredicted RBP12.18□□□□□ -0.46
TRAPPC13-204ENST00000438419 PIP4P2Q8N4L2 257 aa12.11□□□□□ -0.47
TRAPPC13-204ENST00000438419 ATF5Q9Y2D1 282 aaPredicted RBP12.11□□□□□ -0.47
TRAPPC13-204ENST00000438419 ATXN8OSP0DMR3 200 aa12.09□□□□□ -0.47
TRAPPC13-204ENST00000438419 AKT1S1Q96B36 256 aa12.07□□□□□ -0.48
TRAPPC13-204ENST00000438419 POLA2Q14181 598 aa12.04□□□□□ -0.48
TRAPPC13-204ENST00000438419 REM2Q8IYK8 340 aaPredicted RBP11.95□□□□□ -0.5
TRAPPC13-204ENST00000438419 PLSCR2Q9NRY7 297 aa11.9□□□□□ -0.5
TRAPPC13-204ENST00000438419 FXR2P51116 673 aaKnown RBP eCLIP11.88□□□□□ -0.51
TRAPPC13-204ENST00000438419 EVX2Q03828 476 aa11.87□□□□□ -0.51
TRAPPC13-204ENST00000438419 LHX8Q68G74 356 aa11.85□□□□□ -0.51
TRAPPC13-204ENST00000438419 PITPNM1O00562 1244 aa11.83□□□□□ -0.52
TRAPPC13-204ENST00000438419 ZBTB12Q9Y330 459 aaPredicted RBP11.76□□□□□ -0.53
TRAPPC13-204ENST00000438419 OSCARQ8IYS5 282 aa11.69□□□□□ -0.54
TRAPPC13-204ENST00000438419 GABBR2O75899 941 aa11.61□□□□□ -0.55
TRAPPC13-204ENST00000438419 MKRN4PQ13434 485 aaPredicted RBP11.57□□□□□ -0.56
TRAPPC13-204ENST00000438419 PRKAR2AP13861 404 aaKnown RBP11.55□□□□□ -0.56
TRAPPC13-204ENST00000438419 C19orf67A6NJJ6 358 aa11.54□□□□□ -0.56
TRAPPC13-204ENST00000438419 FBLN2P98095 1184 aa11.49□□□□□ -0.57
TRAPPC13-204ENST00000438419 CLEC11AQ9Y240 323 aa11.4□□□□□ -0.58
TRAPPC13-204ENST00000438419 SPDYE1Q8NFV5 336 aaPredicted RBP11.34□□□□□ -0.59
TRAPPC13-204ENST00000438419 POTEIP0CG38 1075 aa11.3□□□□□ -0.6
TRAPPC13-204ENST00000438419 SPDYE2BA6NHP3 402 aa11.29□□□□□ -0.6
TRAPPC13-204ENST00000438419 SPDYE6P0CI01 402 aa11.29□□□□□ -0.6
TRAPPC13-204ENST00000438419 SPDYE2Q495Y8 402 aa11.29□□□□□ -0.6
TRAPPC13-204ENST00000438419 SPDYE4A6NLX3 237 aa11.25□□□□□ -0.61
TRAPPC13-204ENST00000438419 FKBP8Q14318 412 aa11.25□□□□□ -0.61
TRAPPC13-204ENST00000438419 CHADLQ6NUI6 762 aa11.22□□□□□ -0.61
TRAPPC13-204ENST00000438419 POTEMA6NI47 508 aa11.21□□□□□ -0.61
TRAPPC13-204ENST00000438419 ZNF692Q9BU19 519 aaPredicted RBP11.21□□□□□ -0.61
TRAPPC13-204ENST00000438419 SSUH2Q9Y2M2 353 aa11.2□□□□□ -0.62
TRAPPC13-204ENST00000438419 DCBLD2Q96PD2 775 aa11.18□□□□□ -0.62
TRAPPC13-204ENST00000438419 CLCN6P51797 869 aa11.15□□□□□ -0.62
TRAPPC13-204ENST00000438419 POTEGQ6S5H5 508 aa11.14□□□□□ -0.63
TRAPPC13-204ENST00000438419 CD44P16070 742 aaKnown RBP11.13□□□□□ -0.63
TRAPPC13-204ENST00000438419 PROM2Q8N271 834 aa11.1□□□□□ -0.63
TRAPPC13-204ENST00000438419 PABPN1Q86U42 306 aaKnown RBP eCLIP11.08□□□□□ -0.64
TRAPPC13-204ENST00000438419 OTUD5Q96G74 571 aa11.08□□□□□ -0.64
TRAPPC13-204ENST00000438419 PRR29P0C7W0 189 aa11.07□□□□□ -0.64
TRAPPC13-204ENST00000438419 PCDH10Q9P2E7 1040 aa11.07□□□□□ -0.64
TRAPPC13-204ENST00000438419 FARP1Q9Y4F1 1045 aaPredicted RBP10.96□□□□□ -0.65
TRAPPC13-204ENST00000438419 POTEB2H3BUK9 544 aa10.92□□□□□ -0.66
TRAPPC13-204ENST00000438419 ZNF579Q8NAF0 562 aaKnown RBP10.88□□□□□ -0.67
TRAPPC13-204ENST00000438419 ZRANB1Q9UGI0 708 aa10.85□□□□□ -0.67
TRAPPC13-204ENST00000438419 STAG3Q9UJ98 1225 aa10.84□□□□□ -0.67
TRAPPC13-204ENST00000438419 GALR2O43603 387 aaPredicted RBP10.82□□□□□ -0.68
TRAPPC13-204ENST00000438419 FBXO3Q9UK99 471 aa10.81□□□□□ -0.68
TRAPPC13-204ENST00000438419 FAM163AQ96GL9 167 aaPredicted RBP10.74□□□□□ -0.69
TRAPPC13-204ENST00000438419 VASPP50552 380 aaPredicted RBP10.71□□□□□ -0.69
TRAPPC13-204ENST00000438419 MAMSTRQ6ZN01 415 aa10.7□□□□□ -0.7
TRAPPC13-204ENST00000438419 LCE2DQ5TA82 110 aaPredicted RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms