RNA–Protein interactions for RNA: ENST00000505553.5

TRAPPC13-208, Transcript of trafficking protein particle complex 13, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene TRAPPC13, Length 1,410 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC13-208ENST00000505553 AEBP2Q6ZN18 517 aaPredicted RBP22.41■■□□□ 1.18
TRAPPC13-208ENST00000505553 CHIC1Q5VXU3 224 aa21.11■□□□□ 0.97
TRAPPC13-208ENST00000505553 SENP3Q9H4L4 574 aaPredicted RBP19.34■□□□□ 0.69
TRAPPC13-208ENST00000505553 PHF23Q9BUL5 403 aaPredicted RBP18.96■□□□□ 0.63
TRAPPC13-208ENST00000505553 FOXD1Q16676 465 aa17.99■□□□□ 0.47
TRAPPC13-208ENST00000505553 POTEDQ86YR6 584 aa17.45■□□□□ 0.38
TRAPPC13-208ENST00000505553 MSH5O43196 834 aa17.13■□□□□ 0.33
TRAPPC13-208ENST00000505553 PIAS4Q8N2W9 510 aaPredicted RBP16.75■□□□□ 0.27
TRAPPC13-208ENST00000505553 PLPPR3Q6T4P5 718 aa16.53■□□□□ 0.24
TRAPPC13-208ENST00000505553 PPP6R1Q9UPN7 881 aa16.4■□□□□ 0.22
TRAPPC13-208ENST00000505553 ADRA2BP18089 450 aa16.35■□□□□ 0.21
TRAPPC13-208ENST00000505553 DMRT2Q9Y5R5 561 aa15.22■□□□□ 0.03
TRAPPC13-208ENST00000505553 MAPK8IP2Q13387 824 aaPredicted RBP15.14■□□□□ 0.01
TRAPPC13-208ENST00000505553 SCAF1Q9H7N4 1312 aaKnown RBP15.13■□□□□ 0.01
TRAPPC13-208ENST00000505553 CACNB1Q02641 598 aaPredicted RBP14.98□□□□□ -0.01
TRAPPC13-208ENST00000505553 DCAF8L1A6NGE4 600 aa14.66□□□□□ -0.06
TRAPPC13-208ENST00000505553 RNF39Q9H2S5 420 aa14.5□□□□□ -0.09
TRAPPC13-208ENST00000505553 HOXD11P31277 338 aaPredicted RBP14.47□□□□□ -0.09
TRAPPC13-208ENST00000505553 PPP4R3CPQ6ZMV5 832 aa14.39□□□□□ -0.11
TRAPPC13-208ENST00000505553 C1QBPQ07021 282 aaKnown RBP14.32□□□□□ -0.12
TRAPPC13-208ENST00000505553 CNKSR2Q8WXI2 1034 aa14.27□□□□□ -0.12
TRAPPC13-208ENST00000505553 RNF216Q9NWF9 866 aaPredicted RBP14.26□□□□□ -0.13
TRAPPC13-208ENST00000505553 DNAJC5BQ9UF47 199 aa14.13□□□□□ -0.15
TRAPPC13-208ENST00000505553 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.83□□□□□ -0.2
TRAPPC13-208ENST00000505553 NCBP3Q53F19 620 aaKnown RBP13.79□□□□□ -0.2
TRAPPC13-208ENST00000505553 POTEHQ6S545 545 aa13.62□□□□□ -0.23
TRAPPC13-208ENST00000505553 NPM3O75607 178 aaKnown RBP13.47□□□□□ -0.25
TRAPPC13-208ENST00000505553 CAPN15O75808 1086 aa13.43□□□□□ -0.26
TRAPPC13-208ENST00000505553 DSG3P32926 999 aa13.41□□□□□ -0.26
TRAPPC13-208ENST00000505553 U3KPZ7 1027 aaPredicted RBP13.41□□□□□ -0.26
TRAPPC13-208ENST00000505553 SPINK5Q9NQ38 1064 aaPredicted RBP13.34□□□□□ -0.27
TRAPPC13-208ENST00000505553 APLP2Q06481 763 aa13.17□□□□□ -0.3
TRAPPC13-208ENST00000505553 ZNF219Q9P2Y4 722 aaPredicted RBP13.1□□□□□ -0.31
TRAPPC13-208ENST00000505553 TRHP20396 242 aaPredicted RBP13.08□□□□□ -0.32
TRAPPC13-208ENST00000505553 ABCB7O75027 752 aa13.02□□□□□ -0.33
TRAPPC13-208ENST00000505553 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.01□□□□□ -0.33
TRAPPC13-208ENST00000505553 HNRNPUL2Q1KMD3 747 aaKnown RBP13.01□□□□□ -0.33
TRAPPC13-208ENST00000505553 SLC4A2P04920 1241 aa12.96□□□□□ -0.34
TRAPPC13-208ENST00000505553 RBM42Q9BTD8 480 aaKnown RBP12.93□□□□□ -0.34
TRAPPC13-208ENST00000505553 SAMD1Q6SPF0 538 aaPredicted RBP12.88□□□□□ -0.35
TRAPPC13-208ENST00000505553 KCNA4P22459 653 aa12.76□□□□□ -0.37
TRAPPC13-208ENST00000505553 CHRDL2Q6WN34 429 aa12.76□□□□□ -0.37
TRAPPC13-208ENST00000505553 POLA2Q14181 598 aa12.61□□□□□ -0.39
TRAPPC13-208ENST00000505553 MYCNP04198 464 aaPredicted RBP12.54□□□□□ -0.4
TRAPPC13-208ENST00000505553 SP7Q8TDD2 431 aaPredicted RBP12.54□□□□□ -0.4
TRAPPC13-208ENST00000505553 AKT1S1Q96B36 256 aa12.48□□□□□ -0.41
TRAPPC13-208ENST00000505553 ZBTB12Q9Y330 459 aaPredicted RBP12.42□□□□□ -0.42
TRAPPC13-208ENST00000505553 REM2Q8IYK8 340 aaPredicted RBP12.32□□□□□ -0.44
TRAPPC13-208ENST00000505553 PIP4P2Q8N4L2 257 aa12.32□□□□□ -0.44
TRAPPC13-208ENST00000505553 HAX1O00165 279 aa12.28□□□□□ -0.44
TRAPPC13-208ENST00000505553 OSCARQ8IYS5 282 aa12.2□□□□□ -0.46
TRAPPC13-208ENST00000505553 PITPNM1O00562 1244 aa12.18□□□□□ -0.46
TRAPPC13-208ENST00000505553 FXR2P51116 673 aaKnown RBP eCLIP12.18□□□□□ -0.46
TRAPPC13-208ENST00000505553 ATF5Q9Y2D1 282 aaPredicted RBP12.16□□□□□ -0.46
TRAPPC13-208ENST00000505553 FOXD4L1Q9NU39 408 aa12.13□□□□□ -0.47
TRAPPC13-208ENST00000505553 SLC4A1APQ9BWU0 796 aaKnown RBP12.01□□□□□ -0.49
TRAPPC13-208ENST00000505553 EVX2Q03828 476 aa11.96□□□□□ -0.49
TRAPPC13-208ENST00000505553 SPDYE2BA6NHP3 402 aa11.94□□□□□ -0.5
TRAPPC13-208ENST00000505553 SPDYE6P0CI01 402 aa11.94□□□□□ -0.5
TRAPPC13-208ENST00000505553 SPDYE2Q495Y8 402 aa11.94□□□□□ -0.5
TRAPPC13-208ENST00000505553 FBLN2P98095 1184 aa11.89□□□□□ -0.51
TRAPPC13-208ENST00000505553 PRKAR2AP13861 404 aaKnown RBP11.88□□□□□ -0.51
TRAPPC13-208ENST00000505553 SPDYE1Q8NFV5 336 aaPredicted RBP11.86□□□□□ -0.51
TRAPPC13-208ENST00000505553 CLEC11AQ9Y240 323 aa11.85□□□□□ -0.51
TRAPPC13-208ENST00000505553 ATXN8OSP0DMR3 200 aa11.84□□□□□ -0.51
TRAPPC13-208ENST00000505553 C19orf67A6NJJ6 358 aa11.81□□□□□ -0.52
TRAPPC13-208ENST00000505553 GABBR2O75899 941 aa11.76□□□□□ -0.53
TRAPPC13-208ENST00000505553 LHX8Q68G74 356 aa11.76□□□□□ -0.53
TRAPPC13-208ENST00000505553 ZNF692Q9BU19 519 aaPredicted RBP11.71□□□□□ -0.53
TRAPPC13-208ENST00000505553 SSUH2Q9Y2M2 353 aa11.68□□□□□ -0.54
TRAPPC13-208ENST00000505553 ZBTB22O15209 634 aa11.66□□□□□ -0.54
TRAPPC13-208ENST00000505553 CHADLQ6NUI6 762 aa11.6□□□□□ -0.55
TRAPPC13-208ENST00000505553 PRR29P0C7W0 189 aa11.6□□□□□ -0.55
TRAPPC13-208ENST00000505553 MKRN4PQ13434 485 aaPredicted RBP11.59□□□□□ -0.55
TRAPPC13-208ENST00000505553 CLCN6P51797 869 aa11.53□□□□□ -0.56
TRAPPC13-208ENST00000505553 PABPN1Q86U42 306 aaKnown RBP eCLIP11.5□□□□□ -0.57
TRAPPC13-208ENST00000505553 CD44P16070 742 aaKnown RBP11.49□□□□□ -0.57
TRAPPC13-208ENST00000505553 POTEIP0CG38 1075 aa11.43□□□□□ -0.58
TRAPPC13-208ENST00000505553 FARP1Q9Y4F1 1045 aaPredicted RBP11.43□□□□□ -0.58
TRAPPC13-208ENST00000505553 PLSCR2Q9NRY7 297 aa11.42□□□□□ -0.58
TRAPPC13-208ENST00000505553 DCBLD2Q96PD2 775 aa11.41□□□□□ -0.58
TRAPPC13-208ENST00000505553 ZNF579Q8NAF0 562 aaKnown RBP11.28□□□□□ -0.6
TRAPPC13-208ENST00000505553 ZRANB1Q9UGI0 708 aa11.26□□□□□ -0.61
TRAPPC13-208ENST00000505553 STAG3Q9UJ98 1225 aa11.17□□□□□ -0.62
TRAPPC13-208ENST00000505553 PAK3O75914 559 aaPredicted RBP11.15□□□□□ -0.62
TRAPPC13-208ENST00000505553 GALR2O43603 387 aaPredicted RBP11.14□□□□□ -0.63
TRAPPC13-208ENST00000505553 OTUD5Q96G74 571 aa11.14□□□□□ -0.63
TRAPPC13-208ENST00000505553 CREBZFQ9NS37 354 aa11.12□□□□□ -0.63
TRAPPC13-208ENST00000505553 POTEMA6NI47 508 aa11.09□□□□□ -0.63
TRAPPC13-208ENST00000505553 POTEB2H3BUK9 544 aa11.04□□□□□ -0.64
TRAPPC13-208ENST00000505553 POTEGQ6S5H5 508 aa11.04□□□□□ -0.64
TRAPPC13-208ENST00000505553 PCDH10Q9P2E7 1040 aa11.03□□□□□ -0.64
TRAPPC13-208ENST00000505553 NPM1P06748 294 aaKnown RBP eCLIP11.01□□□□□ -0.65
TRAPPC13-208ENST00000505553 PHF12Q96QT6 1004 aa11.01□□□□□ -0.65
TRAPPC13-208ENST00000505553 MAMSTRQ6ZN01 415 aa10.95□□□□□ -0.66
TRAPPC13-208ENST00000505553 SLC39A7Q92504 469 aa10.93□□□□□ -0.66
TRAPPC13-208ENST00000505553 C7P10643 843 aa10.92□□□□□ -0.66
TRAPPC13-208ENST00000505553 PELP1Q8IZL8 1130 aaKnown RBP10.92□□□□□ -0.66
TRAPPC13-208ENST00000505553 METRNQ9UJH8 293 aa10.92□□□□□ -0.66
TRAPPC13-208ENST00000505553 ASTLQ6HA08 431 aaPredicted RBP10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms