RNA–Protein interactions for RNA: ENST00000508304.5

TRAPPC13-209, Transcript of trafficking protein particle complex 13, humanhuman

TSL 2

Gene TRAPPC13, Length 729 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC13-209ENST00000508304 AEBP2Q6ZN18 517 aaPredicted RBP34.11■■■■□ 3.05
TRAPPC13-209ENST00000508304 CHIC1Q5VXU3 224 aa32.37■■■□□ 2.77
TRAPPC13-209ENST00000508304 SENP3Q9H4L4 574 aaPredicted RBP29.08■■■□□ 2.25
TRAPPC13-209ENST00000508304 PHF23Q9BUL5 403 aaPredicted RBP28.7■■■□□ 2.18
TRAPPC13-209ENST00000508304 FOXD1Q16676 465 aa27.11■■□□□ 1.93
TRAPPC13-209ENST00000508304 PLPPR3Q6T4P5 718 aa25.83■■□□□ 1.73
TRAPPC13-209ENST00000508304 MSH5O43196 834 aa25.38■■□□□ 1.65
TRAPPC13-209ENST00000508304 PPP6R1Q9UPN7 881 aa25.34■■□□□ 1.65
TRAPPC13-209ENST00000508304 PIAS4Q8N2W9 510 aaPredicted RBP25.31■■□□□ 1.64
TRAPPC13-209ENST00000508304 ADRA2BP18089 450 aa25.24■■□□□ 1.63
TRAPPC13-209ENST00000508304 POTEDQ86YR6 584 aa24.82■■□□□ 1.56
TRAPPC13-209ENST00000508304 MAPK8IP2Q13387 824 aaPredicted RBP23.19■■□□□ 1.3
TRAPPC13-209ENST00000508304 SCAF1Q9H7N4 1312 aaKnown RBP23.08■■□□□ 1.28
TRAPPC13-209ENST00000508304 DMRT2Q9Y5R5 561 aa23.07■■□□□ 1.28
TRAPPC13-209ENST00000508304 PPP4R3CPQ6ZMV5 832 aa22.64■■□□□ 1.21
TRAPPC13-209ENST00000508304 HOXD11P31277 338 aaPredicted RBP22.23■■□□□ 1.15
TRAPPC13-209ENST00000508304 CNKSR2Q8WXI2 1034 aa22.23■■□□□ 1.15
TRAPPC13-209ENST00000508304 DCAF8L1A6NGE4 600 aa22.05■■□□□ 1.12
TRAPPC13-209ENST00000508304 RNF216Q9NWF9 866 aaPredicted RBP22.04■■□□□ 1.12
TRAPPC13-209ENST00000508304 CACNB1Q02641 598 aaPredicted RBP21.76■■□□□ 1.07
TRAPPC13-209ENST00000508304 NCBP3Q53F19 620 aaKnown RBP21.74■■□□□ 1.07
TRAPPC13-209ENST00000508304 RNF39Q9H2S5 420 aa21.67■■□□□ 1.06
TRAPPC13-209ENST00000508304 DNAJC5BQ9UF47 199 aa21.49■■□□□ 1.03
TRAPPC13-209ENST00000508304 NPM3O75607 178 aaKnown RBP21.45■■□□□ 1.02
TRAPPC13-209ENST00000508304 C1QBPQ07021 282 aaKnown RBP21.34■■□□□ 1.01
TRAPPC13-209ENST00000508304 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.12■□□□□ 0.97
TRAPPC13-209ENST00000508304 KCNA4P22459 653 aa21.02■□□□□ 0.96
TRAPPC13-209ENST00000508304 U3KPZ7 1027 aaPredicted RBP20.71■□□□□ 0.91
TRAPPC13-209ENST00000508304 SLC4A2P04920 1241 aa20.51■□□□□ 0.87
TRAPPC13-209ENST00000508304 SPINK5Q9NQ38 1064 aaPredicted RBP20.41■□□□□ 0.86
TRAPPC13-209ENST00000508304 CAPN15O75808 1086 aa20.34■□□□□ 0.85
TRAPPC13-209ENST00000508304 DSG3P32926 999 aa20.28■□□□□ 0.84
TRAPPC13-209ENST00000508304 APLP2Q06481 763 aa20.1■□□□□ 0.81
TRAPPC13-209ENST00000508304 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.09■□□□□ 0.81
TRAPPC13-209ENST00000508304 HNRNPUL2Q1KMD3 747 aaKnown RBP20.09■□□□□ 0.81
TRAPPC13-209ENST00000508304 TRHP20396 242 aaPredicted RBP20.01■□□□□ 0.79
TRAPPC13-209ENST00000508304 ZNF219Q9P2Y4 722 aaPredicted RBP20■□□□□ 0.79
TRAPPC13-209ENST00000508304 SAMD1Q6SPF0 538 aaPredicted RBP19.98■□□□□ 0.79
TRAPPC13-209ENST00000508304 ABCB7O75027 752 aa19.88■□□□□ 0.77
TRAPPC13-209ENST00000508304 MYCNP04198 464 aaPredicted RBP19.84■□□□□ 0.77
TRAPPC13-209ENST00000508304 SLC4A1APQ9BWU0 796 aaKnown RBP19.82■□□□□ 0.76
TRAPPC13-209ENST00000508304 FOXD4L1Q9NU39 408 aa19.62■□□□□ 0.73
TRAPPC13-209ENST00000508304 POLA2Q14181 598 aa19.48■□□□□ 0.71
TRAPPC13-209ENST00000508304 POTEHQ6S545 545 aa19.44■□□□□ 0.7
TRAPPC13-209ENST00000508304 ATF5Q9Y2D1 282 aaPredicted RBP19.4■□□□□ 0.7
TRAPPC13-209ENST00000508304 ZBTB22O15209 634 aa19.34■□□□□ 0.69
TRAPPC13-209ENST00000508304 RBM42Q9BTD8 480 aaKnown RBP19.33■□□□□ 0.68
TRAPPC13-209ENST00000508304 ZBTB12Q9Y330 459 aaPredicted RBP19.1■□□□□ 0.65
TRAPPC13-209ENST00000508304 ATXN8OSP0DMR3 200 aa19.04■□□□□ 0.64
TRAPPC13-209ENST00000508304 CHRDL2Q6WN34 429 aa18.92■□□□□ 0.62
TRAPPC13-209ENST00000508304 AKT1S1Q96B36 256 aa18.89■□□□□ 0.61
TRAPPC13-209ENST00000508304 OSCARQ8IYS5 282 aa18.87■□□□□ 0.61
TRAPPC13-209ENST00000508304 REM2Q8IYK8 340 aaPredicted RBP18.71■□□□□ 0.59
TRAPPC13-209ENST00000508304 FBLN2P98095 1184 aa18.6■□□□□ 0.57
TRAPPC13-209ENST00000508304 SPDYE2BA6NHP3 402 aa18.52■□□□□ 0.56
TRAPPC13-209ENST00000508304 SPDYE6P0CI01 402 aa18.52■□□□□ 0.56
TRAPPC13-209ENST00000508304 SPDYE2Q495Y8 402 aa18.52■□□□□ 0.56
TRAPPC13-209ENST00000508304 PITPNM1O00562 1244 aa18.51■□□□□ 0.55
TRAPPC13-209ENST00000508304 MKRN4PQ13434 485 aaPredicted RBP18.51■□□□□ 0.55
TRAPPC13-209ENST00000508304 PIP4P2Q8N4L2 257 aa18.48■□□□□ 0.55
TRAPPC13-209ENST00000508304 CSRNP3Q8WYN3 585 aa18.41■□□□□ 0.54
TRAPPC13-209ENST00000508304 FXR2P51116 673 aaKnown RBP eCLIP18.38■□□□□ 0.53
TRAPPC13-209ENST00000508304 SSUH2Q9Y2M2 353 aa18.29■□□□□ 0.52
TRAPPC13-209ENST00000508304 ZNF692Q9BU19 519 aaPredicted RBP18.26■□□□□ 0.51
TRAPPC13-209ENST00000508304 SP7Q8TDD2 431 aaPredicted RBP18.21■□□□□ 0.51
TRAPPC13-209ENST00000508304 SPDYE1Q8NFV5 336 aaPredicted RBP18.19■□□□□ 0.5
TRAPPC13-209ENST00000508304 CLEC11AQ9Y240 323 aa18.12■□□□□ 0.49
TRAPPC13-209ENST00000508304 HAX1O00165 279 aa18.11■□□□□ 0.49
TRAPPC13-209ENST00000508304 EHMT2Q96KQ7 1210 aa18.11■□□□□ 0.49
TRAPPC13-209ENST00000508304 PRKAR2AP13861 404 aaKnown RBP18.02■□□□□ 0.48
TRAPPC13-209ENST00000508304 PABPN1Q86U42 306 aaKnown RBP eCLIP18■□□□□ 0.47
TRAPPC13-209ENST00000508304 EVX2Q03828 476 aa17.92■□□□□ 0.46
TRAPPC13-209ENST00000508304 PRR29P0C7W0 189 aa17.84■□□□□ 0.45
TRAPPC13-209ENST00000508304 CHADLQ6NUI6 762 aa17.81■□□□□ 0.44
TRAPPC13-209ENST00000508304 C19orf67A6NJJ6 358 aa17.79■□□□□ 0.44
TRAPPC13-209ENST00000508304 SPDYE4A6NLX3 237 aa17.59■□□□□ 0.41
TRAPPC13-209ENST00000508304 FARP1Q9Y4F1 1045 aaPredicted RBP17.56■□□□□ 0.4
TRAPPC13-209ENST00000508304 GABBR2O75899 941 aa17.51■□□□□ 0.39
TRAPPC13-209ENST00000508304 STAG3Q9UJ98 1225 aa17.51■□□□□ 0.39
TRAPPC13-209ENST00000508304 CD44P16070 742 aaKnown RBP17.45■□□□□ 0.38
TRAPPC13-209ENST00000508304 CREBZFQ9NS37 354 aa17.43■□□□□ 0.38
TRAPPC13-209ENST00000508304 CLCN6P51797 869 aa17.24■□□□□ 0.35
TRAPPC13-209ENST00000508304 PROM2Q8N271 834 aa17.22■□□□□ 0.35
TRAPPC13-209ENST00000508304 ZNF579Q8NAF0 562 aaKnown RBP17.21■□□□□ 0.35
TRAPPC13-209ENST00000508304 ZRANB1Q9UGI0 708 aa17.19■□□□□ 0.34
TRAPPC13-209ENST00000508304 POTEIP0CG38 1075 aa17.16■□□□□ 0.34
TRAPPC13-209ENST00000508304 MNX1P50219 401 aaPredicted RBP17.15■□□□□ 0.34
TRAPPC13-209ENST00000508304 NPM1P06748 294 aaKnown RBP eCLIP17.07■□□□□ 0.32
TRAPPC13-209ENST00000508304 LHX8Q68G74 356 aa17.07■□□□□ 0.32
TRAPPC13-209ENST00000508304 PAK3O75914 559 aaPredicted RBP17.03■□□□□ 0.32
TRAPPC13-209ENST00000508304 DCBLD2Q96PD2 775 aa17■□□□□ 0.31
TRAPPC13-209ENST00000508304 GALR2O43603 387 aaPredicted RBP16.98■□□□□ 0.31
TRAPPC13-209ENST00000508304 PHF12Q96QT6 1004 aa16.96■□□□□ 0.31
TRAPPC13-209ENST00000508304 MIER1Q8N108 512 aa16.76■□□□□ 0.27
TRAPPC13-209ENST00000508304 TSPYL2Q9H2G4 693 aaPredicted RBP16.75■□□□□ 0.27
TRAPPC13-209ENST00000508304 PLEKHG5O94827 1062 aa16.74■□□□□ 0.27
TRAPPC13-209ENST00000508304 MS4A3Q96HJ5 214 aa16.74■□□□□ 0.27
TRAPPC13-209ENST00000508304 CCDC61Q9Y6R9 512 aa16.72■□□□□ 0.27
TRAPPC13-209ENST00000508304 FKBP8Q14318 412 aa16.67■□□□□ 0.26
TRAPPC13-209ENST00000508304 PELP1Q8IZL8 1130 aaKnown RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms