RNA–Protein interactions for RNA: ENST00000504243.5

TRAPPC13-205, Transcript of trafficking protein particle complex 13, humanhuman

TSL 5

Gene TRAPPC13, Length 643 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC13-205ENST00000504243 AEBP2Q6ZN18 517 aaPredicted RBP24.37■■□□□ 1.49
TRAPPC13-205ENST00000504243 CHIC1Q5VXU3 224 aa23.87■■□□□ 1.41
TRAPPC13-205ENST00000504243 PHF23Q9BUL5 403 aaPredicted RBP20.93■□□□□ 0.94
TRAPPC13-205ENST00000504243 SENP3Q9H4L4 574 aaPredicted RBP20.78■□□□□ 0.92
TRAPPC13-205ENST00000504243 PLPPR3Q6T4P5 718 aa19.42■□□□□ 0.7
TRAPPC13-205ENST00000504243 FOXD1Q16676 465 aa19.22■□□□□ 0.67
TRAPPC13-205ENST00000504243 PPP6R1Q9UPN7 881 aa18.46■□□□□ 0.55
TRAPPC13-205ENST00000504243 ADRA2BP18089 450 aa18.45■□□□□ 0.54
TRAPPC13-205ENST00000504243 PIAS4Q8N2W9 510 aaPredicted RBP18.15■□□□□ 0.5
TRAPPC13-205ENST00000504243 MSH5O43196 834 aa17.81■□□□□ 0.44
TRAPPC13-205ENST00000504243 PPP4R3CPQ6ZMV5 832 aa17.08■□□□□ 0.32
TRAPPC13-205ENST00000504243 SCAF1Q9H7N4 1312 aaKnown RBP17.01■□□□□ 0.31
TRAPPC13-205ENST00000504243 MAPK8IP2Q13387 824 aaPredicted RBP16.73■□□□□ 0.27
TRAPPC13-205ENST00000504243 NCBP3Q53F19 620 aaKnown RBP16.69■□□□□ 0.26
TRAPPC13-205ENST00000504243 KCNA4P22459 653 aa16.63■□□□□ 0.25
TRAPPC13-205ENST00000504243 CNKSR2Q8WXI2 1034 aa16.63■□□□□ 0.25
TRAPPC13-205ENST00000504243 DMRT2Q9Y5R5 561 aa16.57■□□□□ 0.24
TRAPPC13-205ENST00000504243 NPM3O75607 178 aaKnown RBP16.37■□□□□ 0.21
TRAPPC13-205ENST00000504243 RNF216Q9NWF9 866 aaPredicted RBP16.31■□□□□ 0.2
TRAPPC13-205ENST00000504243 HOXD11P31277 338 aaPredicted RBP16.23■□□□□ 0.19
TRAPPC13-205ENST00000504243 POTEDQ86YR6 584 aa16.16■□□□□ 0.18
TRAPPC13-205ENST00000504243 DNAJC5BQ9UF47 199 aa15.95■□□□□ 0.14
TRAPPC13-205ENST00000504243 SLC4A1APQ9BWU0 796 aaKnown RBP15.88■□□□□ 0.13
TRAPPC13-205ENST00000504243 DCAF8L1A6NGE4 600 aa15.84■□□□□ 0.13
TRAPPC13-205ENST00000504243 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.47■□□□□ 0.07
TRAPPC13-205ENST00000504243 SLC4A2P04920 1241 aa15.43■□□□□ 0.06
TRAPPC13-205ENST00000504243 EHMT2Q96KQ7 1210 aa15.38■□□□□ 0.05
TRAPPC13-205ENST00000504243 FOXD4L1Q9NU39 408 aa15.37■□□□□ 0.05
TRAPPC13-205ENST00000504243 ZBTB22O15209 634 aa15.27■□□□□ 0.04
TRAPPC13-205ENST00000504243 CSRNP3Q8WYN3 585 aa15.22■□□□□ 0.03
TRAPPC13-205ENST00000504243 RNF39Q9H2S5 420 aa15.21■□□□□ 0.03
TRAPPC13-205ENST00000504243 U3KPZ7 1027 aaPredicted RBP15.18■□□□□ 0.02
TRAPPC13-205ENST00000504243 MYCNP04198 464 aaPredicted RBP15.17■□□□□ 0.02
TRAPPC13-205ENST00000504243 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.1■□□□□ 0.01
TRAPPC13-205ENST00000504243 HNRNPUL2Q1KMD3 747 aaKnown RBP15.1■□□□□ 0.01
TRAPPC13-205ENST00000504243 C1QBPQ07021 282 aaKnown RBP15.08■□□□□ 0
TRAPPC13-205ENST00000504243 SAMD1Q6SPF0 538 aaPredicted RBP15.02■□□□□ -0
TRAPPC13-205ENST00000504243 APLP2Q06481 763 aa14.96□□□□□ -0.01
TRAPPC13-205ENST00000504243 ATXN8OSP0DMR3 200 aa14.87□□□□□ -0.03
TRAPPC13-205ENST00000504243 CACNB1Q02641 598 aaPredicted RBP14.83□□□□□ -0.04
TRAPPC13-205ENST00000504243 SPINK5Q9NQ38 1064 aaPredicted RBP14.74□□□□□ -0.05
TRAPPC13-205ENST00000504243 CAPN15O75808 1086 aa14.73□□□□□ -0.05
TRAPPC13-205ENST00000504243 ZNF219Q9P2Y4 722 aaPredicted RBP14.69□□□□□ -0.06
TRAPPC13-205ENST00000504243 ATF5Q9Y2D1 282 aaPredicted RBP14.67□□□□□ -0.06
TRAPPC13-205ENST00000504243 TRHP20396 242 aaPredicted RBP14.65□□□□□ -0.06
TRAPPC13-205ENST00000504243 DSG3P32926 999 aa14.47□□□□□ -0.09
TRAPPC13-205ENST00000504243 ABCB7O75027 752 aa14.41□□□□□ -0.1
TRAPPC13-205ENST00000504243 POLA2Q14181 598 aa14.41□□□□□ -0.1
TRAPPC13-205ENST00000504243 ZBTB12Q9Y330 459 aaPredicted RBP14.25□□□□□ -0.13
TRAPPC13-205ENST00000504243 FBLN2P98095 1184 aa14.17□□□□□ -0.14
TRAPPC13-205ENST00000504243 MKRN4PQ13434 485 aaPredicted RBP14.05□□□□□ -0.16
TRAPPC13-205ENST00000504243 OSCARQ8IYS5 282 aa13.9□□□□□ -0.18
TRAPPC13-205ENST00000504243 RBM42Q9BTD8 480 aaKnown RBP13.86□□□□□ -0.19
TRAPPC13-205ENST00000504243 SPDYE2BA6NHP3 402 aa13.83□□□□□ -0.2
TRAPPC13-205ENST00000504243 SPDYE6P0CI01 402 aa13.83□□□□□ -0.2
TRAPPC13-205ENST00000504243 SPDYE2Q495Y8 402 aa13.83□□□□□ -0.2
TRAPPC13-205ENST00000504243 SPDYE4A6NLX3 237 aa13.79□□□□□ -0.2
TRAPPC13-205ENST00000504243 FKBP8Q14318 412 aa13.78□□□□□ -0.2
TRAPPC13-205ENST00000504243 ZNF692Q9BU19 519 aaPredicted RBP13.76□□□□□ -0.21
TRAPPC13-205ENST00000504243 SSUH2Q9Y2M2 353 aa13.69□□□□□ -0.22
TRAPPC13-205ENST00000504243 AKT1S1Q96B36 256 aa13.66□□□□□ -0.22
TRAPPC13-205ENST00000504243 PABPN1Q86U42 306 aaKnown RBP eCLIP13.56□□□□□ -0.24
TRAPPC13-205ENST00000504243 PROM2Q8N271 834 aa13.54□□□□□ -0.24
TRAPPC13-205ENST00000504243 REM2Q8IYK8 340 aaPredicted RBP13.49□□□□□ -0.25
TRAPPC13-205ENST00000504243 SPDYE1Q8NFV5 336 aaPredicted RBP13.43□□□□□ -0.26
TRAPPC13-205ENST00000504243 STAG3Q9UJ98 1225 aa13.41□□□□□ -0.26
TRAPPC13-205ENST00000504243 FBXO3Q9UK99 471 aa13.37□□□□□ -0.27
TRAPPC13-205ENST00000504243 CLEC11AQ9Y240 323 aa13.34□□□□□ -0.27
TRAPPC13-205ENST00000504243 PITPNM1O00562 1244 aa13.32□□□□□ -0.28
TRAPPC13-205ENST00000504243 PRR29P0C7W0 189 aa13.24□□□□□ -0.29
TRAPPC13-205ENST00000504243 CHRDL2Q6WN34 429 aa13.23□□□□□ -0.29
TRAPPC13-205ENST00000504243 VASPP50552 380 aaPredicted RBP13.12□□□□□ -0.31
TRAPPC13-205ENST00000504243 PLEKHG5O94827 1062 aa13.1□□□□□ -0.31
TRAPPC13-205ENST00000504243 FXR2P51116 673 aaKnown RBP eCLIP13.1□□□□□ -0.31
TRAPPC13-205ENST00000504243 MIER1Q8N108 512 aa13.1□□□□□ -0.31
TRAPPC13-205ENST00000504243 PLCD3Q8N3E9 789 aa13.08□□□□□ -0.32
TRAPPC13-205ENST00000504243 PIP4P2Q8N4L2 257 aa13.04□□□□□ -0.32
TRAPPC13-205ENST00000504243 CREBZFQ9NS37 354 aa13.02□□□□□ -0.33
TRAPPC13-205ENST00000504243 PRKAR2AP13861 404 aaKnown RBP13.01□□□□□ -0.33
TRAPPC13-205ENST00000504243 ZBTB47Q9UFB7 747 aaPredicted RBP13□□□□□ -0.33
TRAPPC13-205ENST00000504243 CHADLQ6NUI6 762 aa12.97□□□□□ -0.33
TRAPPC13-205ENST00000504243 AMER1Q5JTC6 1135 aaPredicted RBP12.93□□□□□ -0.34
TRAPPC13-205ENST00000504243 KLHL34Q8N239 644 aa12.93□□□□□ -0.34
TRAPPC13-205ENST00000504243 IFNLR1Q8IU57 520 aaPredicted RBP12.92□□□□□ -0.34
TRAPPC13-205ENST00000504243 RTN4Q9NQC3 1192 aaKnown RBP12.9□□□□□ -0.34
TRAPPC13-205ENST00000504243 NPM1P06748 294 aaKnown RBP eCLIP12.89□□□□□ -0.35
TRAPPC13-205ENST00000504243 FARP1Q9Y4F1 1045 aaPredicted RBP12.89□□□□□ -0.35
TRAPPC13-205ENST00000504243 MNX1P50219 401 aaPredicted RBP12.88□□□□□ -0.35
TRAPPC13-205ENST00000504243 POTEHQ6S545 545 aa12.82□□□□□ -0.36
TRAPPC13-205ENST00000504243 SPOCK2Q92563 424 aa12.82□□□□□ -0.36
TRAPPC13-205ENST00000504243 NUBP1P53384 320 aa12.72□□□□□ -0.37
TRAPPC13-205ENST00000504243 PAK3O75914 559 aaPredicted RBP12.68□□□□□ -0.38
TRAPPC13-205ENST00000504243 FAM212AQ96EL1 285 aa12.67□□□□□ -0.38
TRAPPC13-205ENST00000504243 GSE1Q14687 1217 aa12.66□□□□□ -0.38
TRAPPC13-205ENST00000504243 RASEFQ8IZ41 740 aa12.66□□□□□ -0.38
TRAPPC13-205ENST00000504243 C19orf67A6NJJ6 358 aa12.65□□□□□ -0.38
TRAPPC13-205ENST00000504243 HAX1O00165 279 aa12.65□□□□□ -0.38
TRAPPC13-205ENST00000504243 CD44P16070 742 aaKnown RBP12.64□□□□□ -0.39
TRAPPC13-205ENST00000504243 DCAF8Q5TAQ9 597 aa12.64□□□□□ -0.39
TRAPPC13-205ENST00000504243 TSPYL2Q9H2G4 693 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms