Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.86■■■□□ 2.057e-13■■■□□ 17.8
YBX3P16989 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC27.48■■□□□ 1.997e-13■■■□□ 17.8
YBX3P16989 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC26.5■■□□□ 1.837e-13■■■□□ 17.8
YBX3P16989 DONSON-205ENST00000437395 1719 ntTSL 525.23■■□□□ 1.632e-7■■■□□ 17.8
YBX3P16989 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC25.18■■□□□ 1.622e-7■■■□□ 17.8
YBX3P16989 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC24.35■■□□□ 1.492e-7■■■□□ 17.8
YBX3P16989 DONSON-203ENST00000417871 1820 ntTSL 523.91■■□□□ 1.422e-7■■■□□ 17.8
YBX3P16989 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.322e-7■■■□□ 17.8
YBX3P16989 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.3■■□□□ 1.322e-7■■■□□ 17.8
YBX3P16989 DONSON-211ENST00000457359 2273 ntTSL 521.3■■□□□ 12e-7■■■□□ 17.8
YBX3P16989 DONSON-209ENST00000444517 1180 ntTSL 1 (best)7.07□□□□□ -1.282e-7■■■□□ 17.8
YBX3P16989 DONSON-208ENST00000442660 1566 ntTSL 1 (best)5.29□□□□□ -1.562e-7■■■□□ 17.8
YBX3P16989 SLC19A1-204ENST00000427839 648 ntTSL 323.43■■□□□ 1.343e-7■■■□□ 17.8
YBX3P16989 SLC19A1-205ENST00000443742 777 ntTSL 321.2■□□□□ 0.983e-7■■■□□ 17.8
YBX3P16989 RRM1-208ENST00000530368 332 ntTSL 56.42□□□□□ -1.384e-8■■■□□ 17.8
YBX3P16989 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC9.26□□□□□ -0.932e-7■■■□□ 17.8
YBX3P16989 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.222e-7■■■□□ 17.8
YBX3P16989 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC22.88■■□□□ 1.253e-9■■■□□ 17.8
YBX3P16989 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC22.89■■□□□ 1.257e-7■■■□□ 17.8
YBX3P16989 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.74■□□□□ 0.917e-7■■■□□ 17.8
YBX3P16989 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.737e-7■■■□□ 17.8
YBX3P16989 GYG1-209ENST00000483267 801 ntTSL 2 BASIC17.31■□□□□ 0.367e-7■■■□□ 17.8
YBX3P16989 GYG1-210ENST00000484197 1563 ntTSL 1 (best) BASIC13.97□□□□□ -0.177e-7■■■□□ 17.8
YBX3P16989 GYG1-203ENST00000461191 866 ntTSL 212.16□□□□□ -0.467e-7■■■□□ 17.8
YBX3P16989 DAP-203ENST00000508253 785 ntTSL 220.67■□□□□ 0.92e-6■■■□□ 17.8
YBX3P16989 EMC7-202ENST00000527822 581 ntTSL 223.64■■□□□ 1.377e-7■■■□□ 17.8
YBX3P16989 EMC7-203ENST00000528949 506 ntTSL 35.62□□□□□ -1.517e-7■■■□□ 17.8
YBX3P16989 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 01e-6■■■□□ 17.8
YBX3P16989 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 01e-6■■■□□ 17.8
YBX3P16989 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.041e-6■■■□□ 17.8
YBX3P16989 TNPO2-206ENST00000587068 377 ntTSL 214.59□□□□□ -0.074e-12■■■□□ 17.8
YBX3P16989 SHC1-210ENST00000448116 3481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.311e-6■■■□□ 17.8
YBX3P16989 SHC1-203ENST00000368449 2879 ntTSL 5 BASIC12.72□□□□□ -0.371e-6■■■□□ 17.8
YBX3P16989 KPNB1-207ENST00000579901 594 ntTSL 411.07□□□□□ -0.641e-7■■■□□ 17.8
YBX3P16989 KPNB1-206ENST00000578718 550 ntTSL 35.11□□□□□ -1.591e-7■■■□□ 17.8
YBX3P16989 RNF138-201ENST00000257190 2071 ntTSL 2 BASIC10.7□□□□□ -0.78e-7■■■□□ 17.8
YBX3P16989 CNOT1-218ENST00000569732 906 ntTSL 39.94□□□□□ -0.822e-11■■■□□ 17.8
YBX3P16989 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC19.48■□□□□ 0.712e-7■■■□□ 17.8
YBX3P16989 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC17.36■□□□□ 0.372e-7■■■□□ 17.8
YBX3P16989 MRPL48-209ENST00000540162 1004 ntTSL 516.31■□□□□ 0.22e-7■■■□□ 17.8
YBX3P16989 MRPL48-201ENST00000310614 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.042e-7■■■□□ 17.8
YBX3P16989 MRPL48-206ENST00000508278 1560 ntTSL 214.22□□□□□ -0.132e-7■■■□□ 17.8
YBX3P16989 MRPL48-204ENST00000411840 1197 ntTSL 1 (best) BASIC12.63□□□□□ -0.392e-7■■■□□ 17.8
YBX3P16989 MRPL48-202ENST00000314282 1922 ntTSL 1 (best) BASIC11.13□□□□□ -0.632e-7■■■□□ 17.8
YBX3P16989 MRPL48-211ENST00000543058 699 ntTSL 35.52□□□□□ -1.532e-7■■■□□ 17.8
YBX3P16989 HMBOX1-203ENST00000397358 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.272e-7■■■□□ 17.8
YBX3P16989 HMBOX1-201ENST00000287701 3184 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.782e-7■■■□□ 17.8
YBX3P16989 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.032e-8■■■□□ 17.7
YBX3P16989 TFDP2-209ENST00000477292 1403 ntTSL 2 BASIC12.19□□□□□ -0.462e-8■■■□□ 17.7
YBX3P16989 TFDP2-215ENST00000489671 9857 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.482e-8■■■□□ 17.7
YBX3P16989 TFDP2-222ENST00000495310 1442 ntAPPRIS ALT2 TSL 2 BASIC11.51□□□□□ -0.572e-8■■■□□ 17.7
YBX3P16989 TFDP2-213ENST00000487734 1469 ntTSL 59.85□□□□□ -0.832e-8■■■□□ 17.7
YBX3P16989 TFDP2-212ENST00000486111 2360 ntAPPRIS P3 TSL 1 (best) BASIC9.28□□□□□ -0.922e-8■■■□□ 17.7
YBX3P16989 TFDP2-210ENST00000478006 746 ntTSL 39.01□□□□□ -0.972e-8■■■□□ 17.7
YBX3P16989 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.022e-8■■■□□ 17.7
YBX3P16989 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.042e-8■■■□□ 17.7
YBX3P16989 TFDP2-204ENST00000467667 865 ntTSL 36.74□□□□□ -1.332e-8■■■□□ 17.7
YBX3P16989 TFDP2-223ENST00000497579 878 ntTSL 36.48□□□□□ -1.372e-8■■■□□ 17.7
YBX3P16989 ZKSCAN1-204ENST00000482979 1449 ntTSL 1 (best)17.71■□□□□ 0.431e-8■■■□□ 17.7
YBX3P16989 ZKSCAN1-202ENST00000426572 2011 ntTSL 2 BASIC15.02■□□□□ -01e-8■■■□□ 17.7
YBX3P16989 ZKSCAN1-203ENST00000432317 573 ntTSL 49.67□□□□□ -0.861e-8■■■□□ 17.7
YBX3P16989 MPI-214ENST00000566556 2795 nt11.02□□□□□ -0.652e-8■■■□□ 17.7
YBX3P16989 CAPNS1-203ENST00000586963 570 ntTSL 211.1□□□□□ -0.635e-7■■■□□ 17.7
YBX3P16989 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC32.1■■■□□ 2.735e-9■■■□□ 17.7
YBX3P16989 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC25.84■■□□□ 1.735e-9■■■□□ 17.7
YBX3P16989 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC25.78■■□□□ 1.725e-9■■■□□ 17.7
YBX3P16989 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC24.64■■□□□ 1.545e-9■■■□□ 17.7
YBX3P16989 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC17.92■□□□□ 0.465e-9■■■□□ 17.7
YBX3P16989 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.325e-9■■■□□ 17.7
YBX3P16989 XRCC5-204ENST00000429133 576 ntTSL 418.28■□□□□ 0.521e-8■■■□□ 17.7
YBX3P16989 XRCC5-205ENST00000451695 415 ntTSL 53.4□□□□□ -1.871e-8■■■□□ 17.7
YBX3P16989 RNF166-209ENST00000567844 633 ntTSL 5 BASIC34.49■■■■□ 3.111e-7■■■□□ 17.7
YBX3P16989 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.151e-7■■■□□ 17.7
YBX3P16989 RNF166-205ENST00000562544 502 ntTSL 521.22■□□□□ 0.991e-7■■■□□ 17.7
YBX3P16989 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.162e-9■■■□□ 17.7
YBX3P16989 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.242e-9■■■□□ 17.7
YBX3P16989 SRSF11-214ENST00000484162 4008 ntTSL 1 (best)6.44□□□□□ -1.382e-9■■■□□ 17.7
YBX3P16989 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.4□□□□□ -1.552e-9■■■□□ 17.7
YBX3P16989 SRSF11-206ENST00000461935 3501 ntTSL 1 (best)4.65□□□□□ -1.662e-9■■■□□ 17.7
YBX3P16989 RNH1-216ENST00000529368 727 ntTSL 226.48■■□□□ 1.835e-7■■■□□ 17.7
YBX3P16989 RNH1-219ENST00000531223 572 ntTSL 320.91■□□□□ 0.945e-7■■■□□ 17.7
YBX3P16989 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.045e-7■■■□□ 17.7
YBX3P16989 PPP1CA-209ENST00000537694 882 ntTSL 521.15■□□□□ 0.986e-9■■■□□ 17.7
YBX3P16989 NME1-204ENST00000456492 510 ntTSL 26.74□□□□□ -1.332e-8■■■□□ 17.7
YBX3P16989 UXT-203ENST00000376964 894 ntTSL 219.81■□□□□ 0.765e-9■■■□□ 17.7
YBX3P16989 RPL30-210ENST00000521534 573 ntTSL 26.29□□□□□ -1.47e-49■■■□□ 17.7
YBX3P16989 BUD31-208ENST00000473447 480 ntTSL 218.27■□□□□ 0.521e-8■■■□□ 17.7
YBX3P16989 MRPL18-203ENST00000479638 600 ntTSL 519.8■□□□□ 0.762e-7■■■□□ 17.7
YBX3P16989 PLBD2-203ENST00000547163 598 ntTSL 524.24■■□□□ 1.479e-8■■■□□ 17.7
YBX3P16989 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC22.79■■□□□ 1.241e-6■■■□□ 17.7
YBX3P16989 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.1■□□□□ 0.811e-6■■■□□ 17.7
YBX3P16989 LRRC28-214ENST00000559433 1045 ntTSL 516.6■□□□□ 0.251e-6■■■□□ 17.7
YBX3P16989 LRRC28-206ENST00000558471 793 ntTSL 315.97■□□□□ 0.151e-6■■■□□ 17.7
YBX3P16989 LRRC28-204ENST00000558172 644 ntTSL 513.01□□□□□ -0.331e-6■■■□□ 17.7
YBX3P16989 LRRC28-221ENST00000561276 967 ntTSL 512.81□□□□□ -0.361e-6■■■□□ 17.7
YBX3P16989 LRRC28-216ENST00000559819 2712 ntTSL 210.34□□□□□ -0.751e-6■■■□□ 17.7
YBX3P16989 LRRC28-203ENST00000447360 1235 ntTSL 1 (best) BASIC10.28□□□□□ -0.761e-6■■■□□ 17.7
YBX3P16989 LRRC28-219ENST00000560483 535 ntTSL 510.24□□□□□ -0.771e-6■■■□□ 17.7
YBX3P16989 LRRC28-211ENST00000558890 978 ntTSL 39.6□□□□□ -0.871e-6■■■□□ 17.7
YBX3P16989 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.151e-6■■■□□ 17.7
Retrieved 100 of 29,075 protein–RNA pairs in 394.3 ms