RNA–Protein interactions for RNA: ENST00000331450.9

LRRC28-202, Transcript of leucine rich repeat containing 28, humanhuman

TSL 1 (best) BASIC

Gene LRRC28, Length 752 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-202ENST00000331450 NISCHQ9Y2I1 1504 aa38.61■■■■□ 3.77
LRRC28-202ENST00000331450 CCDC180Q9P1Z9 1646 aa34.29■■■■□ 3.08
LRRC28-202ENST00000331450 ABCC9O60706 1549 aa32.98■■■□□ 2.87
LRRC28-202ENST00000331450 ZCCHC6Q5VYS8 1495 aaKnown RBP32.29■■■□□ 2.76
LRRC28-202ENST00000331450 NACADO15069 1562 aa32.04■■■□□ 2.72
LRRC28-202ENST00000331450 DCAF1Q9Y4B6 1507 aa32.02■■■□□ 2.72
LRRC28-202ENST00000331450 MYO15BQ96JP2 1530 aa32.01■■■□□ 2.72
LRRC28-202ENST00000331450 RB1CC1Q8TDY2 1594 aa31.98■■■□□ 2.71
LRRC28-202ENST00000331450 DCAF8L2P0C7V8 631 aa31.82■■■□□ 2.68
LRRC28-202ENST00000331450 UNC13AQ9UPW8 1703 aa31.42■■■□□ 2.62
LRRC28-202ENST00000331450 SCRIBQ14160 1630 aa31.21■■■□□ 2.59
LRRC28-202ENST00000331450 BICRAQ9NZM4 1560 aa31.06■■■□□ 2.56
LRRC28-202ENST00000331450 PABPN1Q86U42 306 aaKnown RBP eCLIP30.77■■■□□ 2.52
LRRC28-202ENST00000331450 SHROOM4Q9ULL8 1493 aa30.75■■■□□ 2.51
LRRC28-202ENST00000331450 EIF4G1Q04637 1599 aaKnown RBP30.15■■■□□ 2.42
LRRC28-202ENST00000331450 CECR2Q9BXF3 1484 aa30.01■■■□□ 2.4
LRRC28-202ENST00000331450 SMARCA4P51532 1647 aa29.93■■■□□ 2.38
LRRC28-202ENST00000331450 CC2D2AQ9P2K1 1620 aa29.93■■■□□ 2.38
LRRC28-202ENST00000331450 BAZ1AQ9NRL2 1556 aaPredicted RBP29.91■■■□□ 2.38
LRRC28-202ENST00000331450 DNAJC5BQ9UF47 199 aa29.86■■■□□ 2.37
LRRC28-202ENST00000331450 MROH2BQ7Z745 1585 aa29.77■■■□□ 2.36
LRRC28-202ENST00000331450 PEG3Q9GZU2 1588 aa29.67■■■□□ 2.34
LRRC28-202ENST00000331450 SMARCA2P51531 1590 aa29.6■■■□□ 2.33
LRRC28-202ENST00000331450 ATAD2BQ9ULI0 1458 aa29.59■■■□□ 2.33
LRRC28-202ENST00000331450 RSF1Q96T23 1441 aaPredicted RBP29.53■■■□□ 2.32
LRRC28-202ENST00000331450 NCAPD3P42695 1498 aa29.52■■■□□ 2.32
LRRC28-202ENST00000331450 WIZO95785 1651 aa29.5■■■□□ 2.31
LRRC28-202ENST00000331450 HMGXB3Q12766 1538 aa29.49■■■□□ 2.31
LRRC28-202ENST00000331450 BAZ1BQ9UIG0 1483 aaKnown RBP29.36■■■□□ 2.29
LRRC28-202ENST00000331450 TOP2AP11388 1531 aaKnown RBP29.2■■■□□ 2.27
LRRC28-202ENST00000331450 SUPT5HO00267 1087 aaKnown RBP28.9■■■□□ 2.22
LRRC28-202ENST00000331450 CCDC88BA6NC98 1476 aa28.79■■■□□ 2.2
LRRC28-202ENST00000331450 LAMC3Q9Y6N6 1575 aa28.74■■■□□ 2.19
LRRC28-202ENST00000331450 NESP48681 1621 aa28.69■■■□□ 2.18
LRRC28-202ENST00000331450 CADPSQ9ULU8 1353 aa28.62■■■□□ 2.17
LRRC28-202ENST00000331450 PRDM2Q13029 1718 aa28.61■■■□□ 2.17
LRRC28-202ENST00000331450 CFTRP13569 1480 aa28.59■■■□□ 2.17
LRRC28-202ENST00000331450 KIF21AQ7Z4S6 1674 aa28.48■■■□□ 2.15
LRRC28-202ENST00000331450 PDS5BQ9NTI5 1447 aa28.41■■■□□ 2.14
LRRC28-202ENST00000331450 ERCC6Q03468 1493 aa28.36■■■□□ 2.13
LRRC28-202ENST00000331450 FANCD2Q9BXW9 1451 aa28.34■■■□□ 2.13
LRRC28-202ENST00000331450 THOC2Q8NI27 1593 aaKnown RBP28.28■■■□□ 2.12
LRRC28-202ENST00000331450 CEP164Q9UPV0 1460 aa28.27■■■□□ 2.12
LRRC28-202ENST00000331450 MRC2Q9UBG0 1479 aa28.16■■■□□ 2.1
LRRC28-202ENST00000331450 WDR62O43379 1518 aa28.12■■■□□ 2.09
LRRC28-202ENST00000331450 URB2Q14146 1524 aaKnown RBP28.08■■■□□ 2.08
LRRC28-202ENST00000331450 CUX2O14529 1486 aa28■■■□□ 2.07
LRRC28-202ENST00000331450 DNMBPQ6XZF7 1577 aa27.99■■■□□ 2.07
LRRC28-202ENST00000331450 TOPBP1Q92547 1522 aa27.96■■■□□ 2.07
LRRC28-202ENST00000331450 ABCC8Q09428 1581 aa27.95■■■□□ 2.07
LRRC28-202ENST00000331450 CUX1P39880 1505 aa27.91■■■□□ 2.06
LRRC28-202ENST00000331450 BIVM-ERCC5R4GMW8 1640 aa27.85■■■□□ 2.05
LRRC28-202ENST00000331450 SYNJ1O43426 1573 aa27.82■■■□□ 2.04
LRRC28-202ENST00000331450 WRNQ14191 1432 aaPredicted RBP eCLIP27.81■■■□□ 2.04
LRRC28-202ENST00000331450 TOP2BQ02880 1626 aa27.81■■■□□ 2.04
LRRC28-202ENST00000331450 POLA1P09884 1462 aaPredicted RBP27.75■■■□□ 2.03
LRRC28-202ENST00000331450 FGD5Q6ZNL6 1462 aa27.73■■■□□ 2.03
LRRC28-202ENST00000331450 TARBP1Q13395 1621 aaKnown RBP27.7■■■□□ 2.02
LRRC28-202ENST00000331450 IFT140Q96RY7 1462 aa27.65■■■□□ 2.02
LRRC28-202ENST00000331450 WDR97A6NE52 1622 aa27.64■■■□□ 2.02
LRRC28-202ENST00000331450 RAD54L2Q9Y4B4 1467 aa27.57■■■□□ 2
LRRC28-202ENST00000331450 SOGA1O94964 1423 aa27.56■■■□□ 2
LRRC28-202ENST00000331450 EIF4G3O43432 1585 aaKnown RBP27.51■■□□□ 1.99
LRRC28-202ENST00000331450 ZNF608Q9ULD9 1512 aaPredicted RBP27.51■■□□□ 1.99
LRRC28-202ENST00000331450 ABCA10Q8WWZ4 1543 aa27.49■■□□□ 1.99
LRRC28-202ENST00000331450 ABCA5Q8WWZ7 1642 aa27.43■■□□□ 1.98
LRRC28-202ENST00000331450 PBRM1Q86U86 1689 aa27.36■■□□□ 1.97
LRRC28-202ENST00000331450 AQRO60306 1485 aaKnown RBP eCLIP27.35■■□□□ 1.97
LRRC28-202ENST00000331450 TDRD9Q8NDG6 1382 aaKnown RBP27.34■■□□□ 1.97
LRRC28-202ENST00000331450 TRIM41Q8WV44 630 aa27.29■■□□□ 1.96
LRRC28-202ENST00000331450 GAPVD1Q14C86 1478 aa27.29■■□□□ 1.96
LRRC28-202ENST00000331450 CHIC1Q5VXU3 224 aa27.26■■□□□ 1.95
LRRC28-202ENST00000331450 GRIN2BQ13224 1484 aa27.24■■□□□ 1.95
LRRC28-202ENST00000331450 ERICH3Q5RHP9 1530 aa27.19■■□□□ 1.94
LRRC28-202ENST00000331450 KIF27Q86VH2 1401 aa27.17■■□□□ 1.94
LRRC28-202ENST00000331450 SNAPC4Q5SXM2 1469 aa27.16■■□□□ 1.94
LRRC28-202ENST00000331450 MAGI1Q96QZ7 1491 aaPredicted RBP27.16■■□□□ 1.94
LRRC28-202ENST00000331450 ADAMTS12P58397 1594 aa27.12■■□□□ 1.93
LRRC28-202ENST00000331450 CHD1O14646 1710 aa27.11■■□□□ 1.93
LRRC28-202ENST00000331450 RUSC2Q8N2Y8 1516 aa27.09■■□□□ 1.93
LRRC28-202ENST00000331450 CUL7Q14999 1698 aa27.06■■□□□ 1.92
LRRC28-202ENST00000331450 SYNJ2O15056 1496 aa27.03■■□□□ 1.92
LRRC28-202ENST00000331450 IGF1RP08069 1367 aa27■■□□□ 1.91
LRRC28-202ENST00000331450 FHAD1B1AJZ9 1412 aa26.99■■□□□ 1.91
LRRC28-202ENST00000331450 EEA1Q15075 1411 aa26.95■■□□□ 1.9
LRRC28-202ENST00000331450 GRIN2AQ12879 1464 aa26.92■■□□□ 1.9
LRRC28-202ENST00000331450 CARMIL1Q5VZK9 1371 aa26.84■■□□□ 1.89
LRRC28-202ENST00000331450 CHMP7Q8WUX9 453 aaPredicted RBP26.84■■□□□ 1.89
LRRC28-202ENST00000331450 PRXQ9BXM0 1461 aa26.81■■□□□ 1.88
LRRC28-202ENST00000331450 CEP170Q5SW79 1584 aa26.81■■□□□ 1.88
LRRC28-202ENST00000331450 FBLN2P98095 1184 aa26.81■■□□□ 1.88
LRRC28-202ENST00000331450 CLASP1Q7Z460 1538 aa26.8■■□□□ 1.88
LRRC28-202ENST00000331450 NUP160Q12769 1436 aa26.79■■□□□ 1.88
LRRC28-202ENST00000331450 RAPGEF2Q9Y4G8 1499 aa26.77■■□□□ 1.88
LRRC28-202ENST00000331450 OSCARQ8IYS5 282 aa26.76■■□□□ 1.87
LRRC28-202ENST00000331450 CSRNP3Q8WYN3 585 aa26.75■■□□□ 1.87
LRRC28-202ENST00000331450 KIF21BO75037 1637 aa26.74■■□□□ 1.87
LRRC28-202ENST00000331450 FAM9AQ8IZU1 332 aaPredicted RBP26.68■■□□□ 1.86
LRRC28-202ENST00000331450 CTTNBP2Q8WZ74 1663 aa26.67■■□□□ 1.86
LRRC28-202ENST00000331450 SHROOM2Q13796 1616 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 129.1 ms