RNA–Protein interactions for RNA: ENST00000561276.5

LRRC28-221, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 967 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-221ENST00000561276 NISCHQ9Y2I1 1504 aa24.43■■□□□ 1.5
LRRC28-221ENST00000561276 AEBP2Q6ZN18 517 aaPredicted RBP22.82■■□□□ 1.24
LRRC28-221ENST00000561276 CCDC180Q9P1Z9 1646 aa21.61■■□□□ 1.05
LRRC28-221ENST00000561276 CHIC1Q5VXU3 224 aa21.56■■□□□ 1.04
LRRC28-221ENST00000561276 ABCC9O60706 1549 aa20.91■□□□□ 0.94
LRRC28-221ENST00000561276 DCAF8L2P0C7V8 631 aa20.41■□□□□ 0.86
LRRC28-221ENST00000561276 ZCCHC6Q5VYS8 1495 aaKnown RBP20.37■□□□□ 0.85
LRRC28-221ENST00000561276 NACADO15069 1562 aa20.25■□□□□ 0.83
LRRC28-221ENST00000561276 RB1CC1Q8TDY2 1594 aa20.21■□□□□ 0.83
LRRC28-221ENST00000561276 DCAF1Q9Y4B6 1507 aa20.2■□□□□ 0.82
LRRC28-221ENST00000561276 MYO15BQ96JP2 1530 aa20.17■□□□□ 0.82
LRRC28-221ENST00000561276 UNC13AQ9UPW8 1703 aa19.84■□□□□ 0.77
LRRC28-221ENST00000561276 SCRIBQ14160 1630 aa19.75■□□□□ 0.75
LRRC28-221ENST00000561276 BICRAQ9NZM4 1560 aa19.61■□□□□ 0.73
LRRC28-221ENST00000561276 PABPN1Q86U42 306 aaKnown RBP eCLIP19.6■□□□□ 0.73
LRRC28-221ENST00000561276 SHROOM4Q9ULL8 1493 aa19.5■□□□□ 0.71
LRRC28-221ENST00000561276 SENP3Q9H4L4 574 aaPredicted RBP19.48■□□□□ 0.71
LRRC28-221ENST00000561276 PHF23Q9BUL5 403 aaPredicted RBP19.21■□□□□ 0.67
LRRC28-221ENST00000561276 EIF4G1Q04637 1599 aaKnown RBP19.05■□□□□ 0.64
LRRC28-221ENST00000561276 CECR2Q9BXF3 1484 aa19.02■□□□□ 0.63
LRRC28-221ENST00000561276 DNAJC5BQ9UF47 199 aa18.99■□□□□ 0.63
LRRC28-221ENST00000561276 CC2D2AQ9P2K1 1620 aa18.93■□□□□ 0.62
LRRC28-221ENST00000561276 BAZ1AQ9NRL2 1556 aaPredicted RBP18.91■□□□□ 0.62
LRRC28-221ENST00000561276 SMARCA4P51532 1647 aa18.91■□□□□ 0.62
LRRC28-221ENST00000561276 MROH2BQ7Z745 1585 aa18.85■□□□□ 0.61
LRRC28-221ENST00000561276 ATAD2BQ9ULI0 1458 aa18.72■□□□□ 0.59
LRRC28-221ENST00000561276 RSF1Q96T23 1441 aaPredicted RBP18.72■□□□□ 0.59
LRRC28-221ENST00000561276 SMARCA2P51531 1590 aa18.72■□□□□ 0.59
LRRC28-221ENST00000561276 WIZO95785 1651 aa18.69■□□□□ 0.58
LRRC28-221ENST00000561276 PEG3Q9GZU2 1588 aa18.69■□□□□ 0.58
LRRC28-221ENST00000561276 NCAPD3P42695 1498 aa18.68■□□□□ 0.58
LRRC28-221ENST00000561276 HMGXB3Q12766 1538 aa18.59■□□□□ 0.57
LRRC28-221ENST00000561276 BAZ1BQ9UIG0 1483 aaKnown RBP18.58■□□□□ 0.57
LRRC28-221ENST00000561276 SUPT5HO00267 1087 aaKnown RBP18.51■□□□□ 0.55
LRRC28-221ENST00000561276 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
LRRC28-221ENST00000561276 CCDC88BA6NC98 1476 aa18.26■□□□□ 0.51
LRRC28-221ENST00000561276 NESP48681 1621 aa18.18■□□□□ 0.5
LRRC28-221ENST00000561276 FOXD1Q16676 465 aa18.16■□□□□ 0.5
LRRC28-221ENST00000561276 LAMC3Q9Y6N6 1575 aa18.15■□□□□ 0.5
LRRC28-221ENST00000561276 CADPSQ9ULU8 1353 aa18.15■□□□□ 0.5
LRRC28-221ENST00000561276 CFTRP13569 1480 aa18.09■□□□□ 0.49
LRRC28-221ENST00000561276 PRDM2Q13029 1718 aa18.03■□□□□ 0.48
LRRC28-221ENST00000561276 PDS5BQ9NTI5 1447 aa18.01■□□□□ 0.47
LRRC28-221ENST00000561276 KIF21AQ7Z4S6 1674 aa18■□□□□ 0.47
LRRC28-221ENST00000561276 ERCC6Q03468 1493 aa17.98■□□□□ 0.47
LRRC28-221ENST00000561276 FANCD2Q9BXW9 1451 aa17.94■□□□□ 0.46
LRRC28-221ENST00000561276 CEP164Q9UPV0 1460 aa17.88■□□□□ 0.45
LRRC28-221ENST00000561276 THOC2Q8NI27 1593 aaKnown RBP17.82■□□□□ 0.44
LRRC28-221ENST00000561276 MRC2Q9UBG0 1479 aa17.79■□□□□ 0.44
LRRC28-221ENST00000561276 URB2Q14146 1524 aaKnown RBP17.75■□□□□ 0.43
LRRC28-221ENST00000561276 WDR62O43379 1518 aa17.72■□□□□ 0.43
LRRC28-221ENST00000561276 ABCC8Q09428 1581 aa17.7■□□□□ 0.42
LRRC28-221ENST00000561276 TOPBP1Q92547 1522 aa17.69■□□□□ 0.42
LRRC28-221ENST00000561276 DNMBPQ6XZF7 1577 aa17.68■□□□□ 0.42
LRRC28-221ENST00000561276 CUX2O14529 1486 aa17.67■□□□□ 0.42
LRRC28-221ENST00000561276 CUX1P39880 1505 aa17.66■□□□□ 0.42
LRRC28-221ENST00000561276 WRNQ14191 1432 aaPredicted RBP eCLIP17.64■□□□□ 0.41
LRRC28-221ENST00000561276 SYNJ1O43426 1573 aa17.59■□□□□ 0.41
LRRC28-221ENST00000561276 BIVM-ERCC5R4GMW8 1640 aa17.58■□□□□ 0.41
LRRC28-221ENST00000561276 TOP2BQ02880 1626 aa17.58■□□□□ 0.4
LRRC28-221ENST00000561276 POLA1P09884 1462 aaPredicted RBP17.55■□□□□ 0.4
LRRC28-221ENST00000561276 FGD5Q6ZNL6 1462 aa17.55■□□□□ 0.4
LRRC28-221ENST00000561276 SOGA1O94964 1423 aa17.51■□□□□ 0.39
LRRC28-221ENST00000561276 RAD54L2Q9Y4B4 1467 aa17.5■□□□□ 0.39
LRRC28-221ENST00000561276 TARBP1Q13395 1621 aaKnown RBP17.49■□□□□ 0.39
LRRC28-221ENST00000561276 IFT140Q96RY7 1462 aa17.49■□□□□ 0.39
LRRC28-221ENST00000561276 TRIM41Q8WV44 630 aa17.46■□□□□ 0.39
LRRC28-221ENST00000561276 ZNF608Q9ULD9 1512 aaPredicted RBP17.42■□□□□ 0.38
LRRC28-221ENST00000561276 WDR97A6NE52 1622 aa17.41■□□□□ 0.38
LRRC28-221ENST00000561276 TDRD9Q8NDG6 1382 aaKnown RBP17.39■□□□□ 0.37
LRRC28-221ENST00000561276 ABCA10Q8WWZ4 1543 aa17.38■□□□□ 0.37
LRRC28-221ENST00000561276 AQRO60306 1485 aaKnown RBP eCLIP17.37■□□□□ 0.37
LRRC28-221ENST00000561276 EIF4G3O43432 1585 aaKnown RBP17.36■□□□□ 0.37
LRRC28-221ENST00000561276 GAPVD1Q14C86 1478 aa17.31■□□□□ 0.36
LRRC28-221ENST00000561276 ABCA5Q8WWZ7 1642 aa17.29■□□□□ 0.36
LRRC28-221ENST00000561276 PBRM1Q86U86 1689 aa17.28■□□□□ 0.36
LRRC28-221ENST00000561276 GRIN2BQ13224 1484 aa17.24■□□□□ 0.35
LRRC28-221ENST00000561276 KIF27Q86VH2 1401 aa17.24■□□□□ 0.35
LRRC28-221ENST00000561276 RUSC2Q8N2Y8 1516 aa17.21■□□□□ 0.35
LRRC28-221ENST00000561276 PLPPR3Q6T4P5 718 aa17.2■□□□□ 0.34
LRRC28-221ENST00000561276 ERICH3Q5RHP9 1530 aa17.18■□□□□ 0.34
LRRC28-221ENST00000561276 SNAPC4Q5SXM2 1469 aa17.18■□□□□ 0.34
LRRC28-221ENST00000561276 IGF1RP08069 1367 aa17.16■□□□□ 0.34
LRRC28-221ENST00000561276 MAGI1Q96QZ7 1491 aaPredicted RBP17.16■□□□□ 0.34
LRRC28-221ENST00000561276 FBLN2P98095 1184 aa17.15■□□□□ 0.34
LRRC28-221ENST00000561276 CHD1O14646 1710 aa17.13■□□□□ 0.33
LRRC28-221ENST00000561276 CHMP7Q8WUX9 453 aaPredicted RBP17.12■□□□□ 0.33
LRRC28-221ENST00000561276 FAM9AQ8IZU1 332 aaPredicted RBP17.11■□□□□ 0.33
LRRC28-221ENST00000561276 SYNJ2O15056 1496 aa17.1■□□□□ 0.33
LRRC28-221ENST00000561276 FHAD1B1AJZ9 1412 aa17.09■□□□□ 0.33
LRRC28-221ENST00000561276 ADAMTS12P58397 1594 aa17.09■□□□□ 0.33
LRRC28-221ENST00000561276 CUL7Q14999 1698 aa17.09■□□□□ 0.33
LRRC28-221ENST00000561276 CSRNP3Q8WYN3 585 aa17.08■□□□□ 0.32
LRRC28-221ENST00000561276 EEA1Q15075 1411 aa17.07■□□□□ 0.32
LRRC28-221ENST00000561276 CARMIL1Q5VZK9 1371 aa17.06■□□□□ 0.32
LRRC28-221ENST00000561276 OSCARQ8IYS5 282 aa17.06■□□□□ 0.32
LRRC28-221ENST00000561276 MSH5O43196 834 aa17.04■□□□□ 0.32
LRRC28-221ENST00000561276 GRIN2AQ12879 1464 aa17.02■□□□□ 0.32
LRRC28-221ENST00000561276 RAPGEF2Q9Y4G8 1499 aa16.99■□□□□ 0.31
LRRC28-221ENST00000561276 PRXQ9BXM0 1461 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 162.9 ms