RNA–Protein interactions for RNA: ENST00000558172.5

LRRC28-204, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 644 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-204ENST00000558172 NISCHQ9Y2I1 1504 aa24.91■■□□□ 1.58
LRRC28-204ENST00000558172 CCDC180Q9P1Z9 1646 aa22.09■■□□□ 1.13
LRRC28-204ENST00000558172 ABCC9O60706 1549 aa21.26■□□□□ 0.99
LRRC28-204ENST00000558172 ZCCHC6Q5VYS8 1495 aaKnown RBP20.79■□□□□ 0.92
LRRC28-204ENST00000558172 DCAF8L2P0C7V8 631 aa20.69■□□□□ 0.9
LRRC28-204ENST00000558172 NACADO15069 1562 aa20.68■□□□□ 0.9
LRRC28-204ENST00000558172 DCAF1Q9Y4B6 1507 aa20.66■□□□□ 0.9
LRRC28-204ENST00000558172 MYO15BQ96JP2 1530 aa20.65■□□□□ 0.9
LRRC28-204ENST00000558172 RB1CC1Q8TDY2 1594 aa20.64■□□□□ 0.9
LRRC28-204ENST00000558172 UNC13AQ9UPW8 1703 aa20.2■□□□□ 0.82
LRRC28-204ENST00000558172 SCRIBQ14160 1630 aa20.09■□□□□ 0.81
LRRC28-204ENST00000558172 BICRAQ9NZM4 1560 aa19.96■□□□□ 0.79
LRRC28-204ENST00000558172 PABPN1Q86U42 306 aaKnown RBP eCLIP19.9■□□□□ 0.78
LRRC28-204ENST00000558172 SHROOM4Q9ULL8 1493 aa19.83■□□□□ 0.76
LRRC28-204ENST00000558172 EIF4G1Q04637 1599 aaKnown RBP19.42■□□□□ 0.7
LRRC28-204ENST00000558172 CECR2Q9BXF3 1484 aa19.33■□□□□ 0.68
LRRC28-204ENST00000558172 BAZ1AQ9NRL2 1556 aaPredicted RBP19.31■□□□□ 0.68
LRRC28-204ENST00000558172 CC2D2AQ9P2K1 1620 aa19.29■□□□□ 0.68
LRRC28-204ENST00000558172 SMARCA4P51532 1647 aa19.28■□□□□ 0.68
LRRC28-204ENST00000558172 DNAJC5BQ9UF47 199 aa19.24■□□□□ 0.67
LRRC28-204ENST00000558172 MROH2BQ7Z745 1585 aa19.18■□□□□ 0.66
LRRC28-204ENST00000558172 SMARCA2P51531 1590 aa19.12■□□□□ 0.65
LRRC28-204ENST00000558172 PEG3Q9GZU2 1588 aa19.1■□□□□ 0.65
LRRC28-204ENST00000558172 ATAD2BQ9ULI0 1458 aa19.09■□□□□ 0.65
LRRC28-204ENST00000558172 NCAPD3P42695 1498 aa19.06■□□□□ 0.64
LRRC28-204ENST00000558172 RSF1Q96T23 1441 aaPredicted RBP19.06■□□□□ 0.64
LRRC28-204ENST00000558172 WIZO95785 1651 aa19.01■□□□□ 0.63
LRRC28-204ENST00000558172 HMGXB3Q12766 1538 aa19■□□□□ 0.63
LRRC28-204ENST00000558172 BAZ1BQ9UIG0 1483 aaKnown RBP18.96■□□□□ 0.63
LRRC28-204ENST00000558172 TOP2AP11388 1531 aaKnown RBP18.82■□□□□ 0.6
LRRC28-204ENST00000558172 SUPT5HO00267 1087 aaKnown RBP18.77■□□□□ 0.6
LRRC28-204ENST00000558172 CCDC88BA6NC98 1476 aa18.58■□□□□ 0.57
LRRC28-204ENST00000558172 LAMC3Q9Y6N6 1575 aa18.54■□□□□ 0.56
LRRC28-204ENST00000558172 CADPSQ9ULU8 1353 aa18.51■□□□□ 0.55
LRRC28-204ENST00000558172 NESP48681 1621 aa18.47■□□□□ 0.55
LRRC28-204ENST00000558172 CFTRP13569 1480 aa18.46■□□□□ 0.54
LRRC28-204ENST00000558172 PRDM2Q13029 1718 aa18.43■□□□□ 0.54
LRRC28-204ENST00000558172 PDS5BQ9NTI5 1447 aa18.4■□□□□ 0.54
LRRC28-204ENST00000558172 ERCC6Q03468 1493 aa18.33■□□□□ 0.53
LRRC28-204ENST00000558172 KIF21AQ7Z4S6 1674 aa18.32■□□□□ 0.52
LRRC28-204ENST00000558172 FANCD2Q9BXW9 1451 aa18.28■□□□□ 0.52
LRRC28-204ENST00000558172 CEP164Q9UPV0 1460 aa18.25■□□□□ 0.51
LRRC28-204ENST00000558172 THOC2Q8NI27 1593 aaKnown RBP18.17■□□□□ 0.5
LRRC28-204ENST00000558172 MRC2Q9UBG0 1479 aa18.16■□□□□ 0.5
LRRC28-204ENST00000558172 ABCC8Q09428 1581 aa18.1■□□□□ 0.49
LRRC28-204ENST00000558172 WDR62O43379 1518 aa18.1■□□□□ 0.49
LRRC28-204ENST00000558172 URB2Q14146 1524 aaKnown RBP18.07■□□□□ 0.48
LRRC28-204ENST00000558172 CUX2O14529 1486 aa18.07■□□□□ 0.48
LRRC28-204ENST00000558172 DNMBPQ6XZF7 1577 aa18.05■□□□□ 0.48
LRRC28-204ENST00000558172 TOPBP1Q92547 1522 aa18.03■□□□□ 0.48
LRRC28-204ENST00000558172 WRNQ14191 1432 aaPredicted RBP eCLIP17.98■□□□□ 0.47
LRRC28-204ENST00000558172 CUX1P39880 1505 aa17.97■□□□□ 0.47
LRRC28-204ENST00000558172 BIVM-ERCC5R4GMW8 1640 aa17.94■□□□□ 0.46
LRRC28-204ENST00000558172 TOP2BQ02880 1626 aa17.93■□□□□ 0.46
LRRC28-204ENST00000558172 SYNJ1O43426 1573 aa17.9■□□□□ 0.46
LRRC28-204ENST00000558172 POLA1P09884 1462 aaPredicted RBP17.88■□□□□ 0.45
LRRC28-204ENST00000558172 FGD5Q6ZNL6 1462 aa17.88■□□□□ 0.45
LRRC28-204ENST00000558172 IFT140Q96RY7 1462 aa17.87■□□□□ 0.45
LRRC28-204ENST00000558172 SOGA1O94964 1423 aa17.83■□□□□ 0.45
LRRC28-204ENST00000558172 TARBP1Q13395 1621 aaKnown RBP17.83■□□□□ 0.44
LRRC28-204ENST00000558172 RAD54L2Q9Y4B4 1467 aa17.78■□□□□ 0.44
LRRC28-204ENST00000558172 WDR97A6NE52 1622 aa17.76■□□□□ 0.43
LRRC28-204ENST00000558172 TRIM41Q8WV44 630 aa17.75■□□□□ 0.43
LRRC28-204ENST00000558172 ABCA10Q8WWZ4 1543 aa17.73■□□□□ 0.43
LRRC28-204ENST00000558172 ZNF608Q9ULD9 1512 aaPredicted RBP17.71■□□□□ 0.43
LRRC28-204ENST00000558172 EIF4G3O43432 1585 aaKnown RBP17.69■□□□□ 0.42
LRRC28-204ENST00000558172 CHIC1Q5VXU3 224 aa17.68■□□□□ 0.42
LRRC28-204ENST00000558172 TDRD9Q8NDG6 1382 aaKnown RBP17.67■□□□□ 0.42
LRRC28-204ENST00000558172 AQRO60306 1485 aaKnown RBP eCLIP17.66■□□□□ 0.42
LRRC28-204ENST00000558172 ABCA5Q8WWZ7 1642 aa17.65■□□□□ 0.42
LRRC28-204ENST00000558172 GAPVD1Q14C86 1478 aa17.63■□□□□ 0.41
LRRC28-204ENST00000558172 PBRM1Q86U86 1689 aa17.61■□□□□ 0.41
LRRC28-204ENST00000558172 KIF27Q86VH2 1401 aa17.6■□□□□ 0.41
LRRC28-204ENST00000558172 GRIN2BQ13224 1484 aa17.6■□□□□ 0.41
LRRC28-204ENST00000558172 ERICH3Q5RHP9 1530 aa17.55■□□□□ 0.4
LRRC28-204ENST00000558172 MAGI1Q96QZ7 1491 aaPredicted RBP17.53■□□□□ 0.4
LRRC28-204ENST00000558172 SNAPC4Q5SXM2 1469 aa17.5■□□□□ 0.39
LRRC28-204ENST00000558172 IGF1RP08069 1367 aa17.47■□□□□ 0.39
LRRC28-204ENST00000558172 RUSC2Q8N2Y8 1516 aa17.47■□□□□ 0.39
LRRC28-204ENST00000558172 EEA1Q15075 1411 aa17.47■□□□□ 0.39
LRRC28-204ENST00000558172 CUL7Q14999 1698 aa17.46■□□□□ 0.39
LRRC28-204ENST00000558172 SYNJ2O15056 1496 aa17.45■□□□□ 0.38
LRRC28-204ENST00000558172 CHD1O14646 1710 aa17.45■□□□□ 0.38
LRRC28-204ENST00000558172 ADAMTS12P58397 1594 aa17.45■□□□□ 0.38
LRRC28-204ENST00000558172 FHAD1B1AJZ9 1412 aa17.44■□□□□ 0.38
LRRC28-204ENST00000558172 CHMP7Q8WUX9 453 aaPredicted RBP17.43■□□□□ 0.38
LRRC28-204ENST00000558172 FBLN2P98095 1184 aa17.41■□□□□ 0.38
LRRC28-204ENST00000558172 CSRNP3Q8WYN3 585 aa17.38■□□□□ 0.37
LRRC28-204ENST00000558172 CARMIL1Q5VZK9 1371 aa17.38■□□□□ 0.37
LRRC28-204ENST00000558172 OSCARQ8IYS5 282 aa17.37■□□□□ 0.37
LRRC28-204ENST00000558172 GRIN2AQ12879 1464 aa17.36■□□□□ 0.37
LRRC28-204ENST00000558172 FAM9AQ8IZU1 332 aaPredicted RBP17.33■□□□□ 0.36
LRRC28-204ENST00000558172 RAPGEF2Q9Y4G8 1499 aa17.32■□□□□ 0.36
LRRC28-204ENST00000558172 PRXQ9BXM0 1461 aa17.31■□□□□ 0.36
LRRC28-204ENST00000558172 NUP160Q12769 1436 aa17.27■□□□□ 0.35
LRRC28-204ENST00000558172 CEP170Q5SW79 1584 aa17.25■□□□□ 0.35
LRRC28-204ENST00000558172 KIF21BO75037 1637 aa17.25■□□□□ 0.35
LRRC28-204ENST00000558172 CLASP1Q7Z460 1538 aa17.23■□□□□ 0.35
LRRC28-204ENST00000558172 KIAA0586Q9BVV6 1533 aa17.19■□□□□ 0.34
LRRC28-204ENST00000558172 CTTNBP2Q8WZ74 1663 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms