RNA–Protein interactions for RNA: ENST00000560483.1

LRRC28-219, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 535 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-219ENST00000560483 AEBP2Q6ZN18 517 aaPredicted RBP26.25■■□□□ 1.79
LRRC28-219ENST00000560483 CHIC1Q5VXU3 224 aa24.43■■□□□ 1.5
LRRC28-219ENST00000560483 SENP3Q9H4L4 574 aaPredicted RBP22.15■■□□□ 1.14
LRRC28-219ENST00000560483 PHF23Q9BUL5 403 aaPredicted RBP21.92■■□□□ 1.1
LRRC28-219ENST00000560483 FOXD1Q16676 465 aa20.87■□□□□ 0.93
LRRC28-219ENST00000560483 POTEDQ86YR6 584 aa19.7■□□□□ 0.74
LRRC28-219ENST00000560483 MSH5O43196 834 aa19.41■□□□□ 0.7
LRRC28-219ENST00000560483 PPP6R1Q9UPN7 881 aa19.36■□□□□ 0.69
LRRC28-219ENST00000560483 PIAS4Q8N2W9 510 aaPredicted RBP19.35■□□□□ 0.69
LRRC28-219ENST00000560483 PLPPR3Q6T4P5 718 aa19.26■□□□□ 0.67
LRRC28-219ENST00000560483 ADRA2BP18089 450 aa19.24■□□□□ 0.67
LRRC28-219ENST00000560483 NISCHQ9Y2I1 1504 aa19.05■□□□□ 0.64
LRRC28-219ENST00000560483 MAPK8IP2Q13387 824 aaPredicted RBP17.81■□□□□ 0.44
LRRC28-219ENST00000560483 DMRT2Q9Y5R5 561 aa17.58■□□□□ 0.4
LRRC28-219ENST00000560483 SCAF1Q9H7N4 1312 aaKnown RBP17.22■□□□□ 0.35
LRRC28-219ENST00000560483 PPP4R3CPQ6ZMV5 832 aa16.94■□□□□ 0.3
LRRC28-219ENST00000560483 CCDC180Q9P1Z9 1646 aa16.93■□□□□ 0.3
LRRC28-219ENST00000560483 CACNB1Q02641 598 aaPredicted RBP16.93■□□□□ 0.3
LRRC28-219ENST00000560483 DCAF8L1A6NGE4 600 aa16.89■□□□□ 0.29
LRRC28-219ENST00000560483 HOXD11P31277 338 aaPredicted RBP16.8■□□□□ 0.28
LRRC28-219ENST00000560483 RNF39Q9H2S5 420 aa16.68■□□□□ 0.26
LRRC28-219ENST00000560483 ABCC9O60706 1549 aa16.68■□□□□ 0.26
LRRC28-219ENST00000560483 CNKSR2Q8WXI2 1034 aa16.6■□□□□ 0.25
LRRC28-219ENST00000560483 RNF216Q9NWF9 866 aaPredicted RBP16.54■□□□□ 0.24
LRRC28-219ENST00000560483 C1QBPQ07021 282 aaKnown RBP16.27■□□□□ 0.2
LRRC28-219ENST00000560483 DCAF8L2P0C7V8 631 aa16.2■□□□□ 0.18
LRRC28-219ENST00000560483 DNAJC5BQ9UF47 199 aa16.09■□□□□ 0.17
LRRC28-219ENST00000560483 NPM3O75607 178 aaKnown RBP16.02■□□□□ 0.16
LRRC28-219ENST00000560483 RB1CC1Q8TDY2 1594 aa16■□□□□ 0.15
LRRC28-219ENST00000560483 NCBP3Q53F19 620 aaKnown RBP15.99■□□□□ 0.15
LRRC28-219ENST00000560483 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.96■□□□□ 0.15
LRRC28-219ENST00000560483 NACADO15069 1562 aa15.93■□□□□ 0.14
LRRC28-219ENST00000560483 ZCCHC6Q5VYS8 1495 aaKnown RBP15.85■□□□□ 0.13
LRRC28-219ENST00000560483 U3KPZ7 1027 aaPredicted RBP15.74■□□□□ 0.11
LRRC28-219ENST00000560483 MYO15BQ96JP2 1530 aa15.73■□□□□ 0.11
LRRC28-219ENST00000560483 DCAF1Q9Y4B6 1507 aa15.68■□□□□ 0.1
LRRC28-219ENST00000560483 SPINK5Q9NQ38 1064 aaPredicted RBP15.66■□□□□ 0.1
LRRC28-219ENST00000560483 PABPN1Q86U42 306 aaKnown RBP eCLIP15.62■□□□□ 0.09
LRRC28-219ENST00000560483 UNC13AQ9UPW8 1703 aa15.61■□□□□ 0.09
LRRC28-219ENST00000560483 SCRIBQ14160 1630 aa15.57■□□□□ 0.08
LRRC28-219ENST00000560483 DSG3P32926 999 aa15.53■□□□□ 0.08
LRRC28-219ENST00000560483 KCNA4P22459 653 aa15.5■□□□□ 0.07
LRRC28-219ENST00000560483 CAPN15O75808 1086 aa15.49■□□□□ 0.07
LRRC28-219ENST00000560483 SLC4A2P04920 1241 aa15.45■□□□□ 0.06
LRRC28-219ENST00000560483 BICRAQ9NZM4 1560 aa15.41■□□□□ 0.06
LRRC28-219ENST00000560483 POTEHQ6S545 545 aa15.32■□□□□ 0.04
LRRC28-219ENST00000560483 SHROOM4Q9ULL8 1493 aa15.26■□□□□ 0.03
LRRC28-219ENST00000560483 ABCB7O75027 752 aa15.24■□□□□ 0.03
LRRC28-219ENST00000560483 TRHP20396 242 aaPredicted RBP15.21■□□□□ 0.03
LRRC28-219ENST00000560483 EIF4G1Q04637 1599 aaKnown RBP15.07■□□□□ 0
LRRC28-219ENST00000560483 CC2D2AQ9P2K1 1620 aa15.04■□□□□ -0
LRRC28-219ENST00000560483 ZNF219Q9P2Y4 722 aaPredicted RBP15.02■□□□□ -0
LRRC28-219ENST00000560483 CECR2Q9BXF3 1484 aa14.96□□□□□ -0.01
LRRC28-219ENST00000560483 APLP2Q06481 763 aa14.87□□□□□ -0.03
LRRC28-219ENST00000560483 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.85□□□□□ -0.03
LRRC28-219ENST00000560483 HNRNPUL2Q1KMD3 747 aaKnown RBP14.85□□□□□ -0.03
LRRC28-219ENST00000560483 SAMD1Q6SPF0 538 aaPredicted RBP14.83□□□□□ -0.04
LRRC28-219ENST00000560483 SMARCA4P51532 1647 aa14.81□□□□□ -0.04
LRRC28-219ENST00000560483 BAZ1AQ9NRL2 1556 aaPredicted RBP14.81□□□□□ -0.04
LRRC28-219ENST00000560483 SMARCA2P51531 1590 aa14.72□□□□□ -0.05
LRRC28-219ENST00000560483 ATAD2BQ9ULI0 1458 aa14.71□□□□□ -0.05
LRRC28-219ENST00000560483 POLA2Q14181 598 aa14.71□□□□□ -0.05
LRRC28-219ENST00000560483 MROH2BQ7Z745 1585 aa14.7□□□□□ -0.06
LRRC28-219ENST00000560483 MYCNP04198 464 aaPredicted RBP14.69□□□□□ -0.06
LRRC28-219ENST00000560483 BAZ1BQ9UIG0 1483 aaKnown RBP14.67□□□□□ -0.06
LRRC28-219ENST00000560483 NCAPD3P42695 1498 aa14.66□□□□□ -0.06
LRRC28-219ENST00000560483 ATF5Q9Y2D1 282 aaPredicted RBP14.65□□□□□ -0.06
LRRC28-219ENST00000560483 RBM42Q9BTD8 480 aaKnown RBP14.61□□□□□ -0.07
LRRC28-219ENST00000560483 HMGXB3Q12766 1538 aa14.61□□□□□ -0.07
LRRC28-219ENST00000560483 WIZO95785 1651 aa14.59□□□□□ -0.07
LRRC28-219ENST00000560483 CHRDL2Q6WN34 429 aa14.58□□□□□ -0.08
LRRC28-219ENST00000560483 PEG3Q9GZU2 1588 aa14.57□□□□□ -0.08
LRRC28-219ENST00000560483 RSF1Q96T23 1441 aaPredicted RBP14.52□□□□□ -0.08
LRRC28-219ENST00000560483 SLC4A1APQ9BWU0 796 aaKnown RBP14.44□□□□□ -0.1
LRRC28-219ENST00000560483 ERCC6Q03468 1493 aa14.44□□□□□ -0.1
LRRC28-219ENST00000560483 FOXD4L1Q9NU39 408 aa14.41□□□□□ -0.1
LRRC28-219ENST00000560483 TOP2AP11388 1531 aaKnown RBP14.4□□□□□ -0.1
LRRC28-219ENST00000560483 NESP48681 1621 aa14.39□□□□□ -0.11
LRRC28-219ENST00000560483 SUPT5HO00267 1087 aaKnown RBP14.38□□□□□ -0.11
LRRC28-219ENST00000560483 ZBTB22O15209 634 aa14.36□□□□□ -0.11
LRRC28-219ENST00000560483 OSCARQ8IYS5 282 aa14.35□□□□□ -0.11
LRRC28-219ENST00000560483 LAMC3Q9Y6N6 1575 aa14.33□□□□□ -0.12
LRRC28-219ENST00000560483 CADPSQ9ULU8 1353 aa14.3□□□□□ -0.12
LRRC28-219ENST00000560483 AKT1S1Q96B36 256 aa14.28□□□□□ -0.12
LRRC28-219ENST00000560483 PDS5BQ9NTI5 1447 aa14.28□□□□□ -0.12
LRRC28-219ENST00000560483 REM2Q8IYK8 340 aaPredicted RBP14.26□□□□□ -0.13
LRRC28-219ENST00000560483 KIF21AQ7Z4S6 1674 aa14.24□□□□□ -0.13
LRRC28-219ENST00000560483 CCDC88BA6NC98 1476 aa14.24□□□□□ -0.13
LRRC28-219ENST00000560483 PIP4P2Q8N4L2 257 aa14.23□□□□□ -0.13
LRRC28-219ENST00000560483 SP7Q8TDD2 431 aaPredicted RBP14.19□□□□□ -0.14
LRRC28-219ENST00000560483 PITPNM1O00562 1244 aa14.17□□□□□ -0.14
LRRC28-219ENST00000560483 ZBTB12Q9Y330 459 aaPredicted RBP14.17□□□□□ -0.14
LRRC28-219ENST00000560483 CFTRP13569 1480 aa14.17□□□□□ -0.14
LRRC28-219ENST00000560483 FANCD2Q9BXW9 1451 aa14.16□□□□□ -0.14
LRRC28-219ENST00000560483 CEP164Q9UPV0 1460 aa14.16□□□□□ -0.14
LRRC28-219ENST00000560483 CUX2O14529 1486 aa14.15□□□□□ -0.14
LRRC28-219ENST00000560483 THOC2Q8NI27 1593 aaKnown RBP14.13□□□□□ -0.15
LRRC28-219ENST00000560483 PRDM2Q13029 1718 aa14.12□□□□□ -0.15
LRRC28-219ENST00000560483 MRC2Q9UBG0 1479 aa14.11□□□□□ -0.15
LRRC28-219ENST00000560483 FXR2P51116 673 aaKnown RBP eCLIP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms