RNA–Protein interactions for RNA: ENST00000368445.9

SHC1-202, Transcript of SHC adaptor protein 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SHC1, Length 3,472 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1-202ENST00000368445 NISCHQ9Y2I1 1504 aa28.86■■■□□ 2.21
SHC1-202ENST00000368445 DCAF8L2P0C7V8 631 aa25.14■■□□□ 1.61
SHC1-202ENST00000368445 SHROOM4Q9ULL8 1493 aa25.01■■□□□ 1.59
SHC1-202ENST00000368445 SUPT5HO00267 1087 aaKnown RBP24.46■■□□□ 1.51
SHC1-202ENST00000368445 CCDC180Q9P1Z9 1646 aa24.41■■□□□ 1.5
SHC1-202ENST00000368445 ZCCHC6Q5VYS8 1495 aaKnown RBP24.22■■□□□ 1.47
SHC1-202ENST00000368445 ABCC9O60706 1549 aa23.68■■□□□ 1.38
SHC1-202ENST00000368445 DCAF1Q9Y4B6 1507 aa23.4■■□□□ 1.34
SHC1-202ENST00000368445 SCRIBQ14160 1630 aa23.27■■□□□ 1.32
SHC1-202ENST00000368445 CHIC1Q5VXU3 224 aa23.18■■□□□ 1.3
SHC1-202ENST00000368445 NACADO15069 1562 aa22.9■■□□□ 1.26
SHC1-202ENST00000368445 MYO15BQ96JP2 1530 aa22.84■■□□□ 1.25
SHC1-202ENST00000368445 PABPN1Q86U42 306 aaKnown RBP eCLIP22.81■■□□□ 1.248e-7■■□□□ 14.4
SHC1-202ENST00000368445 RSF1Q96T23 1441 aaPredicted RBP22.8■■□□□ 1.24
SHC1-202ENST00000368445 EHMT2Q96KQ7 1210 aa22.76■■□□□ 1.23
SHC1-202ENST00000368445 FAM9AQ8IZU1 332 aaPredicted RBP22.73■■□□□ 1.23
SHC1-202ENST00000368445 LOC105371045A0A1W2PR82 267 aa22.71■■□□□ 1.23
SHC1-202ENST00000368445 RB1CC1Q8TDY2 1594 aa22.71■■□□□ 1.23
SHC1-202ENST00000368445 CECR2Q9BXF3 1484 aa22.71■■□□□ 1.23
SHC1-202ENST00000368445 TRIM41Q8WV44 630 aa22.69■■□□□ 1.22
SHC1-202ENST00000368445 MROH2BQ7Z745 1585 aa22.49■■□□□ 1.19
SHC1-202ENST00000368445 PCGF6Q9BYE7 350 aa22.36■■□□□ 1.17
SHC1-202ENST00000368445 WIZO95785 1651 aa22.3■■□□□ 1.16
SHC1-202ENST00000368445 BAZ1AQ9NRL2 1556 aaPredicted RBP22.22■■□□□ 1.15
SHC1-202ENST00000368445 UNC13AQ9UPW8 1703 aa22.02■■□□□ 1.11
SHC1-202ENST00000368445 SMARCA4P51532 1647 aa22■■□□□ 1.11
SHC1-202ENST00000368445 PPARGC1BQ86YN6 1023 aaKnown RBP21.97■■□□□ 1.11
SHC1-202ENST00000368445 CCDC88BA6NC98 1476 aa21.94■■□□□ 1.1
SHC1-202ENST00000368445 BICRAQ9NZM4 1560 aa21.91■■□□□ 1.1
SHC1-202ENST00000368445 TOP2AP11388 1531 aaKnown RBP21.87■■□□□ 1.09
SHC1-202ENST00000368445 TTBK1Q5TCY1 1321 aaPredicted RBP21.86■■□□□ 1.09
SHC1-202ENST00000368445 UBTFP17480 764 aaKnown RBP21.82■■□□□ 1.08
SHC1-202ENST00000368445 TRIM26Q12899 539 aaPredicted RBP21.8■■□□□ 1.08
SHC1-202ENST00000368445 ABCC8Q09428 1581 aa21.8■■□□□ 1.08
SHC1-202ENST00000368445 RANGAP1P46060 587 aaPredicted RBP21.76■■□□□ 1.07
SHC1-202ENST00000368445 HRCP23327 699 aa21.74■■□□□ 1.07
SHC1-202ENST00000368445 BAZ1BQ9UIG0 1483 aaKnown RBP21.73■■□□□ 1.07
SHC1-202ENST00000368445 SMARCA2P51531 1590 aa21.73■■□□□ 1.07
SHC1-202ENST00000368445 ATAD2BQ9ULI0 1458 aa21.69■■□□□ 1.06
SHC1-202ENST00000368445 CSRNP3Q8WYN3 585 aa21.63■■□□□ 1.05
SHC1-202ENST00000368445 SOGA1O94964 1423 aa21.6■■□□□ 1.05
SHC1-202ENST00000368445 WRNQ14191 1432 aaPredicted RBP eCLIP21.56■■□□□ 1.04
SHC1-202ENST00000368445 RUSC2Q8N2Y8 1516 aa21.47■■□□□ 1.03
SHC1-202ENST00000368445 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
SHC1-202ENST00000368445 PEG3Q9GZU2 1588 aa21.37■■□□□ 1.01
SHC1-202ENST00000368445 APLP2Q06481 763 aa21.32■■□□□ 1
SHC1-202ENST00000368445 CEP162Q5TB80 1403 aa21.3■■□□□ 1
SHC1-202ENST00000368445 NCAPD3P42695 1498 aa21.27■■□□□ 1
SHC1-202ENST00000368445 EEA1Q15075 1411 aa21.26■□□□□ 0.99
SHC1-202ENST00000368445 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.23■□□□□ 0.99
SHC1-202ENST00000368445 TNIKQ9UKE5 1360 aa21.23■□□□□ 0.99
SHC1-202ENST00000368445 CCER1Q8TC90 406 aaPredicted RBP21.22■□□□□ 0.99
SHC1-202ENST00000368445 SYNJ1O43426 1573 aa21.22■□□□□ 0.99
SHC1-202ENST00000368445 GOLGA3Q08378 1498 aa21.19■□□□□ 0.98
SHC1-202ENST00000368445 ZEB1P37275 1124 aaPredicted RBP21.13■□□□□ 0.97
SHC1-202ENST00000368445 CEP164Q9UPV0 1460 aa21.1■□□□□ 0.97
SHC1-202ENST00000368445 HNRNPUL2Q1KMD3 747 aaKnown RBP21.09■□□□□ 0.97
SHC1-202ENST00000368445 HMGXB3Q12766 1538 aa21.08■□□□□ 0.97
SHC1-202ENST00000368445 CLIP1P30622 1438 aa21.07■□□□□ 0.96
SHC1-202ENST00000368445 RAPGEF2Q9Y4G8 1499 aa21.04■□□□□ 0.96
SHC1-202ENST00000368445 CADPSQ9ULU8 1353 aa21.04■□□□□ 0.96
SHC1-202ENST00000368445 ATP1B4Q9UN42 357 aaPredicted RBP21.03■□□□□ 0.96
SHC1-202ENST00000368445 CC2D2AQ9P2K1 1620 aa21■□□□□ 0.95
SHC1-202ENST00000368445 CFTRP13569 1480 aa21■□□□□ 0.95
SHC1-202ENST00000368445 KIF27Q86VH2 1401 aa20.97■□□□□ 0.95
SHC1-202ENST00000368445 DNAJC5BQ9UF47 199 aa20.97■□□□□ 0.95
SHC1-202ENST00000368445 P3H3Q8IVL6 736 aa20.92■□□□□ 0.94
SHC1-202ENST00000368445 TOP2BQ02880 1626 aa20.92■□□□□ 0.94
SHC1-202ENST00000368445 CUX1P39880 1505 aa20.92■□□□□ 0.94
SHC1-202ENST00000368445 CUX2O14529 1486 aa20.9■□□□□ 0.94
SHC1-202ENST00000368445 ITGAEP38570 1179 aa20.84■□□□□ 0.93
SHC1-202ENST00000368445 NESP48681 1621 aa20.84■□□□□ 0.93
SHC1-202ENST00000368445 FANCD2Q9BXW9 1451 aa20.81■□□□□ 0.92
SHC1-202ENST00000368445 KIF21BO75037 1637 aa20.78■□□□□ 0.92
SHC1-202ENST00000368445 VPS8Q8N3P4 1428 aa20.77■□□□□ 0.92
SHC1-202ENST00000368445 FGD5Q6ZNL6 1462 aa20.75■□□□□ 0.91
SHC1-202ENST00000368445 CARMIL1Q5VZK9 1371 aa20.75■□□□□ 0.91
SHC1-202ENST00000368445 IGF1RP08069 1367 aa20.73■□□□□ 0.91
SHC1-202ENST00000368445 BIVM-ERCC5R4GMW8 1640 aa20.72■□□□□ 0.91
SHC1-202ENST00000368445 PRXQ9BXM0 1461 aa20.71■□□□□ 0.91
SHC1-202ENST00000368445 KANK4Q5T7N3 995 aaPredicted RBP20.7■□□□□ 0.91
SHC1-202ENST00000368445 RAD54L2Q9Y4B4 1467 aa20.7■□□□□ 0.9
SHC1-202ENST00000368445 TDRD9Q8NDG6 1382 aaKnown RBP20.65■□□□□ 0.9
SHC1-202ENST00000368445 PDS5BQ9NTI5 1447 aa20.57■□□□□ 0.88
SHC1-202ENST00000368445 ERICH3Q5RHP9 1530 aa20.56■□□□□ 0.88
SHC1-202ENST00000368445 ARAP1Q96P48 1450 aa20.56■□□□□ 0.88
SHC1-202ENST00000368445 FAM50AQ14320 339 aaKnown RBP20.55■□□□□ 0.88
SHC1-202ENST00000368445 TOPBP1Q92547 1522 aa20.53■□□□□ 0.88
SHC1-202ENST00000368445 POLA1P09884 1462 aaPredicted RBP20.52■□□□□ 0.88
SHC1-202ENST00000368445 ARID3CA6NKF2 412 aa20.5■□□□□ 0.87
SHC1-202ENST00000368445 ARHGAP35Q9NRY4 1499 aa20.47■□□□□ 0.87
SHC1-202ENST00000368445 FBLN2P98095 1184 aa20.45■□□□□ 0.86
SHC1-202ENST00000368445 DNMBPQ6XZF7 1577 aa20.43■□□□□ 0.86
SHC1-202ENST00000368445 DIEXFQ68CQ4 756 aaKnown RBP20.41■□□□□ 0.86
SHC1-202ENST00000368445 FHOD3Q2V2M9 1422 aa20.4■□□□□ 0.86
SHC1-202ENST00000368445 URB2Q14146 1524 aaKnown RBP20.4■□□□□ 0.86
SHC1-202ENST00000368445 PRDM2Q13029 1718 aa20.37■□□□□ 0.85
SHC1-202ENST00000368445 LAMC3Q9Y6N6 1575 aa20.37■□□□□ 0.85
SHC1-202ENST00000368445 ABCA10Q8WWZ4 1543 aa20.35■□□□□ 0.85
SHC1-202ENST00000368445 GAPVD1Q14C86 1478 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms