RNA–Protein interactions for RNA: ENST00000558890.5

LRRC28-211, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 978 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-211ENST00000558890 NISCHQ9Y2I1 1504 aa18.13■□□□□ 0.49
LRRC28-211ENST00000558890 AEBP2Q6ZN18 517 aaPredicted RBP16.28■□□□□ 0.2
LRRC28-211ENST00000558890 CCDC180Q9P1Z9 1646 aa16.06■□□□□ 0.16
LRRC28-211ENST00000558890 CHIC1Q5VXU3 224 aa16.01■□□□□ 0.15
LRRC28-211ENST00000558890 ABCC9O60706 1549 aa15.66■□□□□ 0.1
LRRC28-211ENST00000558890 ZCCHC6Q5VYS8 1495 aaKnown RBP15.12■□□□□ 0.01
LRRC28-211ENST00000558890 MYO15BQ96JP2 1530 aa15.09■□□□□ 0.01
LRRC28-211ENST00000558890 DCAF1Q9Y4B6 1507 aa15.09■□□□□ 0.01
LRRC28-211ENST00000558890 NACADO15069 1562 aa15.08■□□□□ 0
LRRC28-211ENST00000558890 DCAF8L2P0C7V8 631 aa15.07■□□□□ 0
LRRC28-211ENST00000558890 RB1CC1Q8TDY2 1594 aa15.03■□□□□ -0
LRRC28-211ENST00000558890 PABPN1Q86U42 306 aaKnown RBP eCLIP14.71□□□□□ -0.05
LRRC28-211ENST00000558890 BICRAQ9NZM4 1560 aa14.7□□□□□ -0.06
LRRC28-211ENST00000558890 UNC13AQ9UPW8 1703 aa14.69□□□□□ -0.06
LRRC28-211ENST00000558890 SCRIBQ14160 1630 aa14.59□□□□□ -0.07
LRRC28-211ENST00000558890 DNAJC5BQ9UF47 199 aa14.53□□□□□ -0.08
LRRC28-211ENST00000558890 SHROOM4Q9ULL8 1493 aa14.48□□□□□ -0.09
LRRC28-211ENST00000558890 EIF4G1Q04637 1599 aaKnown RBP14.24□□□□□ -0.13
LRRC28-211ENST00000558890 CECR2Q9BXF3 1484 aa14.17□□□□□ -0.14
LRRC28-211ENST00000558890 CC2D2AQ9P2K1 1620 aa14.15□□□□□ -0.14
LRRC28-211ENST00000558890 PHF23Q9BUL5 403 aaPredicted RBP14.06□□□□□ -0.16
LRRC28-211ENST00000558890 BAZ1AQ9NRL2 1556 aaPredicted RBP14□□□□□ -0.17
LRRC28-211ENST00000558890 NCAPD3P42695 1498 aa14□□□□□ -0.17
LRRC28-211ENST00000558890 SMARCA4P51532 1647 aa14□□□□□ -0.17
LRRC28-211ENST00000558890 ATAD2BQ9ULI0 1458 aa13.99□□□□□ -0.17
LRRC28-211ENST00000558890 MROH2BQ7Z745 1585 aa13.98□□□□□ -0.17
LRRC28-211ENST00000558890 PEG3Q9GZU2 1588 aa13.92□□□□□ -0.18
LRRC28-211ENST00000558890 SMARCA2P51531 1590 aa13.88□□□□□ -0.19
LRRC28-211ENST00000558890 RSF1Q96T23 1441 aaPredicted RBP13.88□□□□□ -0.19
LRRC28-211ENST00000558890 HMGXB3Q12766 1538 aa13.85□□□□□ -0.19
LRRC28-211ENST00000558890 SENP3Q9H4L4 574 aaPredicted RBP13.84□□□□□ -0.19
LRRC28-211ENST00000558890 BAZ1BQ9UIG0 1483 aaKnown RBP13.79□□□□□ -0.2
LRRC28-211ENST00000558890 WIZO95785 1651 aa13.78□□□□□ -0.2
LRRC28-211ENST00000558890 TOP2AP11388 1531 aaKnown RBP13.66□□□□□ -0.22
LRRC28-211ENST00000558890 NESP48681 1621 aa13.61□□□□□ -0.23
LRRC28-211ENST00000558890 CADPSQ9ULU8 1353 aa13.58□□□□□ -0.24
LRRC28-211ENST00000558890 CCDC88BA6NC98 1476 aa13.55□□□□□ -0.24
LRRC28-211ENST00000558890 CFTRP13569 1480 aa13.51□□□□□ -0.25
LRRC28-211ENST00000558890 LAMC3Q9Y6N6 1575 aa13.5□□□□□ -0.25
LRRC28-211ENST00000558890 SUPT5HO00267 1087 aaKnown RBP13.49□□□□□ -0.25
LRRC28-211ENST00000558890 PDS5BQ9NTI5 1447 aa13.45□□□□□ -0.26
LRRC28-211ENST00000558890 ERCC6Q03468 1493 aa13.42□□□□□ -0.26
LRRC28-211ENST00000558890 PRDM2Q13029 1718 aa13.39□□□□□ -0.27
LRRC28-211ENST00000558890 FANCD2Q9BXW9 1451 aa13.36□□□□□ -0.27
LRRC28-211ENST00000558890 KIF21AQ7Z4S6 1674 aa13.34□□□□□ -0.27
LRRC28-211ENST00000558890 THOC2Q8NI27 1593 aaKnown RBP13.33□□□□□ -0.28
LRRC28-211ENST00000558890 CUX2O14529 1486 aa13.33□□□□□ -0.28
LRRC28-211ENST00000558890 MRC2Q9UBG0 1479 aa13.29□□□□□ -0.28
LRRC28-211ENST00000558890 CEP164Q9UPV0 1460 aa13.29□□□□□ -0.28
LRRC28-211ENST00000558890 URB2Q14146 1524 aaKnown RBP13.27□□□□□ -0.29
LRRC28-211ENST00000558890 WDR62O43379 1518 aa13.26□□□□□ -0.29
LRRC28-211ENST00000558890 TOPBP1Q92547 1522 aa13.16□□□□□ -0.3
LRRC28-211ENST00000558890 ABCC8Q09428 1581 aa13.13□□□□□ -0.31
LRRC28-211ENST00000558890 DNMBPQ6XZF7 1577 aa13.11□□□□□ -0.31
LRRC28-211ENST00000558890 CUX1P39880 1505 aa13.1□□□□□ -0.31
LRRC28-211ENST00000558890 POLA1P09884 1462 aaPredicted RBP13.07□□□□□ -0.32
LRRC28-211ENST00000558890 IFT140Q96RY7 1462 aa13.05□□□□□ -0.32
LRRC28-211ENST00000558890 PLPPR3Q6T4P5 718 aa13.05□□□□□ -0.32
LRRC28-211ENST00000558890 BIVM-ERCC5R4GMW8 1640 aa13.05□□□□□ -0.32
LRRC28-211ENST00000558890 ZNF608Q9ULD9 1512 aaPredicted RBP13.04□□□□□ -0.32
LRRC28-211ENST00000558890 RAD54L2Q9Y4B4 1467 aa13.03□□□□□ -0.32
LRRC28-211ENST00000558890 TARBP1Q13395 1621 aaKnown RBP13.02□□□□□ -0.32
LRRC28-211ENST00000558890 SOGA1O94964 1423 aa13.02□□□□□ -0.33
LRRC28-211ENST00000558890 TOP2BQ02880 1626 aa13.02□□□□□ -0.33
LRRC28-211ENST00000558890 WRNQ14191 1432 aaPredicted RBP eCLIP13.01□□□□□ -0.33
LRRC28-211ENST00000558890 FGD5Q6ZNL6 1462 aa13.01□□□□□ -0.33
LRRC28-211ENST00000558890 DNAJC5Q9H3Z4 198 aa12.99□□□□□ -0.33
LRRC28-211ENST00000558890 AQRO60306 1485 aaKnown RBP eCLIP12.97□□□□□ -0.33
LRRC28-211ENST00000558890 SYNJ1O43426 1573 aa12.97□□□□□ -0.33
LRRC28-211ENST00000558890 TDRD9Q8NDG6 1382 aaKnown RBP12.96□□□□□ -0.33
LRRC28-211ENST00000558890 WDR97A6NE52 1622 aa12.95□□□□□ -0.34
LRRC28-211ENST00000558890 ABCA10Q8WWZ4 1543 aa12.93□□□□□ -0.34
LRRC28-211ENST00000558890 EIF4G3O43432 1585 aaKnown RBP12.88□□□□□ -0.35
LRRC28-211ENST00000558890 OSCARQ8IYS5 282 aa12.85□□□□□ -0.35
LRRC28-211ENST00000558890 GAPVD1Q14C86 1478 aa12.85□□□□□ -0.35
LRRC28-211ENST00000558890 GRIN2BQ13224 1484 aa12.83□□□□□ -0.36
LRRC28-211ENST00000558890 FOXD1Q16676 465 aa12.82□□□□□ -0.36
LRRC28-211ENST00000558890 ABCA5Q8WWZ7 1642 aa12.81□□□□□ -0.36
LRRC28-211ENST00000558890 SNAPC4Q5SXM2 1469 aa12.79□□□□□ -0.36
LRRC28-211ENST00000558890 IGF1RP08069 1367 aa12.79□□□□□ -0.36
LRRC28-211ENST00000558890 MAGI1Q96QZ7 1491 aaPredicted RBP12.78□□□□□ -0.36
LRRC28-211ENST00000558890 EEA1Q15075 1411 aa12.77□□□□□ -0.37
LRRC28-211ENST00000558890 TRIM41Q8WV44 630 aa12.76□□□□□ -0.37
LRRC28-211ENST00000558890 SYNJ2O15056 1496 aa12.74□□□□□ -0.37
LRRC28-211ENST00000558890 CHMP7Q8WUX9 453 aaPredicted RBP12.74□□□□□ -0.37
LRRC28-211ENST00000558890 ERICH3Q5RHP9 1530 aa12.73□□□□□ -0.37
LRRC28-211ENST00000558890 FBLN2P98095 1184 aa12.73□□□□□ -0.37
LRRC28-211ENST00000558890 KIF27Q86VH2 1401 aa12.72□□□□□ -0.37
LRRC28-211ENST00000558890 PBRM1Q86U86 1689 aa12.71□□□□□ -0.37
LRRC28-211ENST00000558890 RUSC2Q8N2Y8 1516 aa12.71□□□□□ -0.38
LRRC28-211ENST00000558890 FHAD1B1AJZ9 1412 aa12.71□□□□□ -0.38
LRRC28-211ENST00000558890 CUL7Q14999 1698 aa12.7□□□□□ -0.38
LRRC28-211ENST00000558890 CHD1O14646 1710 aa12.68□□□□□ -0.38
LRRC28-211ENST00000558890 ADAMTS12P58397 1594 aa12.67□□□□□ -0.38
LRRC28-211ENST00000558890 GRIN2AQ12879 1464 aa12.66□□□□□ -0.38
LRRC28-211ENST00000558890 NUP160Q12769 1436 aa12.66□□□□□ -0.38
LRRC28-211ENST00000558890 CLASP1Q7Z460 1538 aa12.65□□□□□ -0.38
LRRC28-211ENST00000558890 CARMIL1Q5VZK9 1371 aa12.64□□□□□ -0.39
LRRC28-211ENST00000558890 CEP170Q5SW79 1584 aa12.6□□□□□ -0.39
LRRC28-211ENST00000558890 KIF21BO75037 1637 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 166.2 ms