RNA–Protein interactions for RNA: ENST00000558879.5

LRRC28-210, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4 BASIC

Gene LRRC28, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-210ENST00000558879 NISCHQ9Y2I1 1504 aa42.52■■■■■ 4.4
LRRC28-210ENST00000558879 CCDC180Q9P1Z9 1646 aa38.2■■■■□ 3.71
LRRC28-210ENST00000558879 ABCC9O60706 1549 aa37.5■■■■□ 3.59
LRRC28-210ENST00000558879 RB1CC1Q8TDY2 1594 aa36.01■■■■□ 3.35
LRRC28-210ENST00000558879 NACADO15069 1562 aa35.86■■■■□ 3.33
LRRC28-210ENST00000558879 MYO15BQ96JP2 1530 aa35.56■■■■□ 3.28
LRRC28-210ENST00000558879 UNC13AQ9UPW8 1703 aa35.44■■■■□ 3.26
LRRC28-210ENST00000558879 ZCCHC6Q5VYS8 1495 aaKnown RBP35.39■■■■□ 3.26
LRRC28-210ENST00000558879 DCAF8L2P0C7V8 631 aa35.31■■■■□ 3.24
LRRC28-210ENST00000558879 DCAF1Q9Y4B6 1507 aa35.23■■■■□ 3.23
LRRC28-210ENST00000558879 BICRAQ9NZM4 1560 aa35■■■■□ 3.19
LRRC28-210ENST00000558879 PABPN1Q86U42 306 aaKnown RBP eCLIP34.81■■■■□ 3.16
LRRC28-210ENST00000558879 DNAJC5BQ9UF47 199 aa34.73■■■■□ 3.15
LRRC28-210ENST00000558879 SCRIBQ14160 1630 aa34.66■■■■□ 3.14
LRRC28-210ENST00000558879 SHROOM4Q9ULL8 1493 aa34.59■■■■□ 3.13
LRRC28-210ENST00000558879 EIF4G1Q04637 1599 aaKnown RBP34.06■■■■□ 3.04
LRRC28-210ENST00000558879 CC2D2AQ9P2K1 1620 aa34.04■■■■□ 3.04
LRRC28-210ENST00000558879 CECR2Q9BXF3 1484 aa33.76■■■□□ 2.99
LRRC28-210ENST00000558879 SMARCA4P51532 1647 aa33.17■■■□□ 2.9
LRRC28-210ENST00000558879 NCAPD3P42695 1498 aa33.03■■■□□ 2.88
LRRC28-210ENST00000558879 BAZ1AQ9NRL2 1556 aaPredicted RBP33.01■■■□□ 2.88
LRRC28-210ENST00000558879 ATAD2BQ9ULI0 1458 aa32.98■■■□□ 2.87
LRRC28-210ENST00000558879 SMARCA2P51531 1590 aa32.97■■■□□ 2.87
LRRC28-210ENST00000558879 HMGXB3Q12766 1538 aa32.94■■■□□ 2.86
LRRC28-210ENST00000558879 PEG3Q9GZU2 1588 aa32.89■■■□□ 2.86
LRRC28-210ENST00000558879 MROH2BQ7Z745 1585 aa32.75■■■□□ 2.83
LRRC28-210ENST00000558879 BAZ1BQ9UIG0 1483 aaKnown RBP32.67■■■□□ 2.82
LRRC28-210ENST00000558879 WIZO95785 1651 aa32.45■■■□□ 2.79
LRRC28-210ENST00000558879 NESP48681 1621 aa32.37■■■□□ 2.77
LRRC28-210ENST00000558879 ERCC6Q03468 1493 aa32.33■■■□□ 2.77
LRRC28-210ENST00000558879 LAMC3Q9Y6N6 1575 aa32.32■■■□□ 2.77
LRRC28-210ENST00000558879 CUX2O14529 1486 aa32.26■■■□□ 2.75
LRRC28-210ENST00000558879 KIF21AQ7Z4S6 1674 aa32.16■■■□□ 2.74
LRRC28-210ENST00000558879 RSF1Q96T23 1441 aaPredicted RBP32.16■■■□□ 2.74
LRRC28-210ENST00000558879 THOC2Q8NI27 1593 aaKnown RBP32.15■■■□□ 2.74
LRRC28-210ENST00000558879 TOP2AP11388 1531 aaKnown RBP32.06■■■□□ 2.72
LRRC28-210ENST00000558879 CADPSQ9ULU8 1353 aa31.97■■■□□ 2.71
LRRC28-210ENST00000558879 PDS5BQ9NTI5 1447 aa31.96■■■□□ 2.71
LRRC28-210ENST00000558879 PRDM2Q13029 1718 aa31.82■■■□□ 2.68
LRRC28-210ENST00000558879 CFTRP13569 1480 aa31.78■■■□□ 2.68
LRRC28-210ENST00000558879 MRC2Q9UBG0 1479 aa31.74■■■□□ 2.67
LRRC28-210ENST00000558879 WDR62O43379 1518 aa31.74■■■□□ 2.67
LRRC28-210ENST00000558879 CEP164Q9UPV0 1460 aa31.69■■■□□ 2.66
LRRC28-210ENST00000558879 FANCD2Q9BXW9 1451 aa31.65■■■□□ 2.66
LRRC28-210ENST00000558879 DNAJC5Q9H3Z4 198 aa31.6■■■□□ 2.65
LRRC28-210ENST00000558879 CCDC88BA6NC98 1476 aa31.58■■■□□ 2.65
LRRC28-210ENST00000558879 URB2Q14146 1524 aaKnown RBP31.42■■■□□ 2.62
LRRC28-210ENST00000558879 TOPBP1Q92547 1522 aa31.15■■■□□ 2.58
LRRC28-210ENST00000558879 DNMBPQ6XZF7 1577 aa31.13■■■□□ 2.57
LRRC28-210ENST00000558879 ABCC8Q09428 1581 aa31.09■■■□□ 2.57
LRRC28-210ENST00000558879 IFT140Q96RY7 1462 aa31.02■■■□□ 2.56
LRRC28-210ENST00000558879 TARBP1Q13395 1621 aaKnown RBP30.94■■■□□ 2.54
LRRC28-210ENST00000558879 ZNF608Q9ULD9 1512 aaPredicted RBP30.93■■■□□ 2.54
LRRC28-210ENST00000558879 EIF4G3O43432 1585 aaKnown RBP30.92■■■□□ 2.54
LRRC28-210ENST00000558879 POLA1P09884 1462 aaPredicted RBP30.85■■■□□ 2.53
LRRC28-210ENST00000558879 SUPT5HO00267 1087 aaKnown RBP30.78■■■□□ 2.52
LRRC28-210ENST00000558879 CUX1P39880 1505 aa30.77■■■□□ 2.52
LRRC28-210ENST00000558879 WDR97A6NE52 1622 aa30.71■■■□□ 2.51
LRRC28-210ENST00000558879 FGD5Q6ZNL6 1462 aa30.7■■■□□ 2.51
LRRC28-210ENST00000558879 CHD1O14646 1710 aa30.67■■■□□ 2.5
LRRC28-210ENST00000558879 RAD54L2Q9Y4B4 1467 aa30.65■■■□□ 2.5
LRRC28-210ENST00000558879 AQRO60306 1485 aaKnown RBP eCLIP30.63■■■□□ 2.49
LRRC28-210ENST00000558879 OSCARQ8IYS5 282 aa30.62■■■□□ 2.49
LRRC28-210ENST00000558879 SOGA1O94964 1423 aa30.6■■■□□ 2.49
LRRC28-210ENST00000558879 BIVM-ERCC5R4GMW8 1640 aa30.51■■■□□ 2.48
LRRC28-210ENST00000558879 PBRM1Q86U86 1689 aa30.5■■■□□ 2.47
LRRC28-210ENST00000558879 RIMBP3CA6NJZ7 1639 aa30.47■■■□□ 2.47
LRRC28-210ENST00000558879 RIMBP3BA6NNM3 1639 aa30.47■■■□□ 2.47
LRRC28-210ENST00000558879 RIMBP3Q9UFD9 1639 aa30.47■■■□□ 2.47
LRRC28-210ENST00000558879 TDRD9Q8NDG6 1382 aaKnown RBP30.45■■■□□ 2.47
LRRC28-210ENST00000558879 TOP2BQ02880 1626 aa30.44■■■□□ 2.46
LRRC28-210ENST00000558879 ABCA5Q8WWZ7 1642 aa30.44■■■□□ 2.46
LRRC28-210ENST00000558879 SNAPC4Q5SXM2 1469 aa30.41■■■□□ 2.46
LRRC28-210ENST00000558879 ABCA10Q8WWZ4 1543 aa30.41■■■□□ 2.46
LRRC28-210ENST00000558879 SYNJ1O43426 1573 aa30.4■■■□□ 2.46
LRRC28-210ENST00000558879 MAGI1Q96QZ7 1491 aaPredicted RBP30.38■■■□□ 2.45
LRRC28-210ENST00000558879 GRIN2BQ13224 1484 aa30.37■■■□□ 2.45
LRRC28-210ENST00000558879 ARHGEF11O15085 1522 aa30.35■■■□□ 2.45
LRRC28-210ENST00000558879 WRNQ14191 1432 aaPredicted RBP eCLIP30.32■■■□□ 2.44
LRRC28-210ENST00000558879 GAPVD1Q14C86 1478 aa30.3■■■□□ 2.44
LRRC28-210ENST00000558879 TRIM41Q8WV44 630 aa30.27■■■□□ 2.44
LRRC28-210ENST00000558879 CLASP1Q7Z460 1538 aa30.26■■■□□ 2.43
LRRC28-210ENST00000558879 SYNJ2O15056 1496 aa30.25■■■□□ 2.43
LRRC28-210ENST00000558879 FBLN2P98095 1184 aa30.17■■■□□ 2.42
LRRC28-210ENST00000558879 ADAMTS12P58397 1594 aa30.15■■■□□ 2.42
LRRC28-210ENST00000558879 ARAP1Q96P48 1450 aa30.07■■■□□ 2.4
LRRC28-210ENST00000558879 CHMP7Q8WUX9 453 aaPredicted RBP30.06■■■□□ 2.4
LRRC28-210ENST00000558879 ERICH3Q5RHP9 1530 aa30.06■■■□□ 2.4
LRRC28-210ENST00000558879 GRIN2AQ12879 1464 aa30.01■■■□□ 2.4
LRRC28-210ENST00000558879 CEP170Q5SW79 1584 aa29.95■■■□□ 2.39
LRRC28-210ENST00000558879 FHAD1B1AJZ9 1412 aa29.93■■■□□ 2.38
LRRC28-210ENST00000558879 NUP160Q12769 1436 aa29.91■■■□□ 2.38
LRRC28-210ENST00000558879 SHROOM2Q13796 1616 aa29.87■■■□□ 2.37
LRRC28-210ENST00000558879 CYB5RLQ6IPT4 315 aa29.84■■■□□ 2.37
LRRC28-210ENST00000558879 CUL7Q14999 1698 aa29.78■■■□□ 2.36
LRRC28-210ENST00000558879 ERCC6L2Q5T890 1561 aa29.76■■■□□ 2.35
LRRC28-210ENST00000558879 RUSC2Q8N2Y8 1516 aa29.75■■■□□ 2.35
LRRC28-210ENST00000558879 KIF27Q86VH2 1401 aa29.69■■■□□ 2.34
LRRC28-210ENST00000558879 IGF1RP08069 1367 aa29.59■■■□□ 2.33
LRRC28-210ENST00000558879 PRG4Q92954 1404 aaPredicted RBP29.47■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms