RNA–Protein interactions for RNA: ENST00000558745.5

TSPAN3-205, Transcript of tetraspanin 3, humanhuman

TSL 5 BASIC

Gene TSPAN3, Length 1,340 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-205ENST00000558745 NISCHQ9Y2I1 1504 aa33.5■■■□□ 2.95
TSPAN3-205ENST00000558745 CCDC180Q9P1Z9 1646 aa29.64■■■□□ 2.34
TSPAN3-205ENST00000558745 ABCC9O60706 1549 aa29.24■■■□□ 2.27
TSPAN3-205ENST00000558745 DCAF8L2P0C7V8 631 aa28.22■■■□□ 2.11
TSPAN3-205ENST00000558745 RB1CC1Q8TDY2 1594 aa27.97■■■□□ 2.07
TSPAN3-205ENST00000558745 NACADO15069 1562 aa27.92■■■□□ 2.06
TSPAN3-205ENST00000558745 ZCCHC6Q5VYS8 1495 aaKnown RBP27.86■■■□□ 2.05
TSPAN3-205ENST00000558745 DNAJC5BQ9UF47 199 aa27.86■■■□□ 2.05
TSPAN3-205ENST00000558745 MYO15BQ96JP2 1530 aa27.68■■■□□ 2.02
TSPAN3-205ENST00000558745 DCAF1Q9Y4B6 1507 aa27.6■■■□□ 2.01
TSPAN3-205ENST00000558745 PABPN1Q86U42 306 aaKnown RBP eCLIP27.43■■□□□ 1.98
TSPAN3-205ENST00000558745 UNC13AQ9UPW8 1703 aa27.38■■□□□ 1.97
TSPAN3-205ENST00000558745 SCRIBQ14160 1630 aa27.21■■□□□ 1.95
TSPAN3-205ENST00000558745 BICRAQ9NZM4 1560 aa27.19■■□□□ 1.94
TSPAN3-205ENST00000558745 SHROOM4Q9ULL8 1493 aa26.7■■□□□ 1.86
TSPAN3-205ENST00000558745 EIF4G1Q04637 1599 aaKnown RBP26.45■■□□□ 1.83
TSPAN3-205ENST00000558745 CC2D2AQ9P2K1 1620 aa26.37■■□□□ 1.81
TSPAN3-205ENST00000558745 DNAJC5Q9H3Z4 198 aa26.37■■□□□ 1.81
TSPAN3-205ENST00000558745 CECR2Q9BXF3 1484 aa26.22■■□□□ 1.79
TSPAN3-205ENST00000558745 SMARCA4P51532 1647 aa25.97■■□□□ 1.75
TSPAN3-205ENST00000558745 BAZ1AQ9NRL2 1556 aaPredicted RBP25.91■■□□□ 1.74
TSPAN3-205ENST00000558745 MROH2BQ7Z745 1585 aa25.88■■□□□ 1.73
TSPAN3-205ENST00000558745 ATAD2BQ9ULI0 1458 aa25.87■■□□□ 1.73
TSPAN3-205ENST00000558745 NCAPD3P42695 1498 aa25.82■■□□□ 1.72
TSPAN3-205ENST00000558745 SMARCA2P51531 1590 aa25.75■■□□□ 1.71
TSPAN3-205ENST00000558745 PEG3Q9GZU2 1588 aa25.65■■□□□ 1.7
TSPAN3-205ENST00000558745 BAZ1BQ9UIG0 1483 aaKnown RBP25.63■■□□□ 1.69
TSPAN3-205ENST00000558745 HMGXB3Q12766 1538 aa25.62■■□□□ 1.69
TSPAN3-205ENST00000558745 WIZO95785 1651 aa25.6■■□□□ 1.69
TSPAN3-205ENST00000558745 RSF1Q96T23 1441 aaPredicted RBP25.58■■□□□ 1.69
TSPAN3-205ENST00000558745 CUX2O14529 1486 aa25.38■■□□□ 1.65
TSPAN3-205ENST00000558745 NESP48681 1621 aa25.32■■□□□ 1.64
TSPAN3-205ENST00000558745 TOP2AP11388 1531 aaKnown RBP25.24■■□□□ 1.63
TSPAN3-205ENST00000558745 ERCC6Q03468 1493 aa25.13■■□□□ 1.61
TSPAN3-205ENST00000558745 CADPSQ9ULU8 1353 aa25.11■■□□□ 1.61
TSPAN3-205ENST00000558745 SUPT5HO00267 1087 aaKnown RBP25.1■■□□□ 1.61
TSPAN3-205ENST00000558745 LAMC3Q9Y6N6 1575 aa25.08■■□□□ 1.6
TSPAN3-205ENST00000558745 CCDC88BA6NC98 1476 aa25.04■■□□□ 1.6
TSPAN3-205ENST00000558745 PDS5BQ9NTI5 1447 aa24.97■■□□□ 1.59
TSPAN3-205ENST00000558745 CFTRP13569 1480 aa24.93■■□□□ 1.58
TSPAN3-205ENST00000558745 KIF21AQ7Z4S6 1674 aa24.92■■□□□ 1.58
TSPAN3-205ENST00000558745 FANCD2Q9BXW9 1451 aa24.81■■□□□ 1.56
TSPAN3-205ENST00000558745 TRIM41Q8WV44 630 aa24.8■■□□□ 1.56
TSPAN3-205ENST00000558745 THOC2Q8NI27 1593 aaKnown RBP24.79■■□□□ 1.56
TSPAN3-205ENST00000558745 CEP164Q9UPV0 1460 aa24.74■■□□□ 1.55
TSPAN3-205ENST00000558745 MRC2Q9UBG0 1479 aa24.71■■□□□ 1.55
TSPAN3-205ENST00000558745 PRDM2Q13029 1718 aa24.62■■□□□ 1.53
TSPAN3-205ENST00000558745 WDR62O43379 1518 aa24.6■■□□□ 1.53
TSPAN3-205ENST00000558745 URB2Q14146 1524 aaKnown RBP24.59■■□□□ 1.53
TSPAN3-205ENST00000558745 TOPBP1Q92547 1522 aa24.41■■□□□ 1.5
TSPAN3-205ENST00000558745 DNMBPQ6XZF7 1577 aa24.34■■□□□ 1.49
TSPAN3-205ENST00000558745 ABCC8Q09428 1581 aa24.31■■□□□ 1.48
TSPAN3-205ENST00000558745 CUX1P39880 1505 aa24.25■■□□□ 1.47
TSPAN3-205ENST00000558745 ZNF608Q9ULD9 1512 aaPredicted RBP24.22■■□□□ 1.47
TSPAN3-205ENST00000558745 IFT140Q96RY7 1462 aa24.22■■□□□ 1.47
TSPAN3-205ENST00000558745 POLA1P09884 1462 aaPredicted RBP24.21■■□□□ 1.47
TSPAN3-205ENST00000558745 RAD54L2Q9Y4B4 1467 aa24.2■■□□□ 1.46
TSPAN3-205ENST00000558745 FGD5Q6ZNL6 1462 aa24.16■■□□□ 1.46
TSPAN3-205ENST00000558745 SOGA1O94964 1423 aa24.15■■□□□ 1.46
TSPAN3-205ENST00000558745 TARBP1Q13395 1621 aaKnown RBP24.12■■□□□ 1.45
TSPAN3-205ENST00000558745 AQRO60306 1485 aaKnown RBP eCLIP24.11■■□□□ 1.45
TSPAN3-205ENST00000558745 WRNQ14191 1432 aaPredicted RBP eCLIP24.08■■□□□ 1.45
TSPAN3-205ENST00000558745 TDRD9Q8NDG6 1382 aaKnown RBP24.07■■□□□ 1.44
TSPAN3-205ENST00000558745 OSCARQ8IYS5 282 aa24.07■■□□□ 1.44
TSPAN3-205ENST00000558745 SYNJ1O43426 1573 aa24.04■■□□□ 1.44
TSPAN3-205ENST00000558745 EIF4G3O43432 1585 aaKnown RBP24.02■■□□□ 1.44
TSPAN3-205ENST00000558745 TOP2BQ02880 1626 aa23.98■■□□□ 1.43
TSPAN3-205ENST00000558745 BIVM-ERCC5R4GMW8 1640 aa23.96■■□□□ 1.43
TSPAN3-205ENST00000558745 ABCA10Q8WWZ4 1543 aa23.88■■□□□ 1.41
TSPAN3-205ENST00000558745 FBLN2P98095 1184 aa23.87■■□□□ 1.41
TSPAN3-205ENST00000558745 WDR97A6NE52 1622 aa23.87■■□□□ 1.41
TSPAN3-205ENST00000558745 GAPVD1Q14C86 1478 aa23.83■■□□□ 1.41
TSPAN3-205ENST00000558745 SNAPC4Q5SXM2 1469 aa23.81■■□□□ 1.4
TSPAN3-205ENST00000558745 GRIN2BQ13224 1484 aa23.81■■□□□ 1.4
TSPAN3-205ENST00000558745 RIMBP3CA6NJZ7 1639 aa23.79■■□□□ 1.4
TSPAN3-205ENST00000558745 RIMBP3BA6NNM3 1639 aa23.79■■□□□ 1.4
TSPAN3-205ENST00000558745 RIMBP3Q9UFD9 1639 aa23.79■■□□□ 1.4
TSPAN3-205ENST00000558745 ABCA5Q8WWZ7 1642 aa23.77■■□□□ 1.4
TSPAN3-205ENST00000558745 CHMP7Q8WUX9 453 aaPredicted RBP23.74■■□□□ 1.39
TSPAN3-205ENST00000558745 CHD1O14646 1710 aa23.73■■□□□ 1.39
TSPAN3-205ENST00000558745 PBRM1Q86U86 1689 aa23.72■■□□□ 1.39
TSPAN3-205ENST00000558745 MAGI1Q96QZ7 1491 aaPredicted RBP23.69■■□□□ 1.38
TSPAN3-205ENST00000558745 SYNJ2O15056 1496 aa23.64■■□□□ 1.37
TSPAN3-205ENST00000558745 ARHGEF11O15085 1522 aa23.63■■□□□ 1.37
TSPAN3-205ENST00000558745 AEBP2Q6ZN18 517 aaPredicted RBP23.62■■□□□ 1.37
TSPAN3-205ENST00000558745 TRHP20396 242 aaPredicted RBP23.59■■□□□ 1.37
TSPAN3-205ENST00000558745 ERICH3Q5RHP9 1530 aa23.56■■□□□ 1.36
TSPAN3-205ENST00000558745 KIF27Q86VH2 1401 aa23.56■■□□□ 1.36
TSPAN3-205ENST00000558745 IGF1RP08069 1367 aa23.55■■□□□ 1.36
TSPAN3-205ENST00000558745 ADAMTS12P58397 1594 aa23.54■■□□□ 1.36
TSPAN3-205ENST00000558745 FHAD1B1AJZ9 1412 aa23.54■■□□□ 1.36
TSPAN3-205ENST00000558745 CYB5RLQ6IPT4 315 aa23.52■■□□□ 1.36
TSPAN3-205ENST00000558745 RUSC2Q8N2Y8 1516 aa23.51■■□□□ 1.35
TSPAN3-205ENST00000558745 GRIN2AQ12879 1464 aa23.5■■□□□ 1.35
TSPAN3-205ENST00000558745 CLASP1Q7Z460 1538 aa23.45■■□□□ 1.34
TSPAN3-205ENST00000558745 CEP170Q5SW79 1584 aa23.41■■□□□ 1.34
TSPAN3-205ENST00000558745 NUP160Q12769 1436 aa23.39■■□□□ 1.34
TSPAN3-205ENST00000558745 CARMIL1Q5VZK9 1371 aa23.39■■□□□ 1.33
TSPAN3-205ENST00000558745 CHIC1Q5VXU3 224 aa23.37■■□□□ 1.33
TSPAN3-205ENST00000558745 ARAP1Q96P48 1450 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms