RNA–Protein interactions for RNA: ENST00000301981.7

LRRC28-201, Transcript of leucine rich repeat containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRRC28, Length 5,971 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-201ENST00000301981 DCAF8L2P0C7V8 631 aa13.48□□□□□ -0.25
LRRC28-201ENST00000301981 SUPT5HO00267 1087 aaKnown RBP13.31□□□□□ -0.28
LRRC28-201ENST00000301981 NISCHQ9Y2I1 1504 aa13.29□□□□□ -0.28
LRRC28-201ENST00000301981 SHROOM4Q9ULL8 1493 aa13.27□□□□□ -0.29
LRRC28-201ENST00000301981 EHMT2Q96KQ7 1210 aa13.07□□□□□ -0.32
LRRC28-201ENST00000301981 PCGF6Q9BYE7 350 aa12.76□□□□□ -0.37
LRRC28-201ENST00000301981 TTBK1Q5TCY1 1321 aaPredicted RBP12.61□□□□□ -0.39
LRRC28-201ENST00000301981 FAM9AQ8IZU1 332 aaPredicted RBP12.59□□□□□ -0.39
LRRC28-201ENST00000301981 PPARGC1BQ86YN6 1023 aaKnown RBP12.47□□□□□ -0.41
LRRC28-201ENST00000301981 LOC105371045A0A1W2PR82 267 aa12.3□□□□□ -0.44
LRRC28-201ENST00000301981 RANGAP1P46060 587 aaPredicted RBP12.2□□□□□ -0.46
LRRC28-201ENST00000301981 HRCP23327 699 aa12.19□□□□□ -0.46
LRRC28-201ENST00000301981 YTHDC1Q96MU7 727 aaKnown RBP12.13□□□□□ -0.47
LRRC28-201ENST00000301981 PELP1Q8IZL8 1130 aaKnown RBP12.07□□□□□ -0.48
LRRC28-201ENST00000301981 CHIC1Q5VXU3 224 aa12.07□□□□□ -0.48
LRRC28-201ENST00000301981 CCER1Q8TC90 406 aaPredicted RBP12.05□□□□□ -0.48
LRRC28-201ENST00000301981 TRIM41Q8WV44 630 aa12.05□□□□□ -0.48
LRRC28-201ENST00000301981 TRIM26Q12899 539 aaPredicted RBP11.89□□□□□ -0.51
LRRC28-201ENST00000301981 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.88□□□□□ -0.51
LRRC28-201ENST00000301981 MYT1Q01538 1121 aa11.8□□□□□ -0.52
LRRC28-201ENST00000301981 UBTFP17480 764 aaKnown RBP11.79□□□□□ -0.52
LRRC28-201ENST00000301981 CENPBP07199 599 aaPredicted RBP11.78□□□□□ -0.52
LRRC28-201ENST00000301981 APLP2Q06481 763 aa11.78□□□□□ -0.52
LRRC28-201ENST00000301981 ZEB1P37275 1124 aaPredicted RBP11.77□□□□□ -0.53
LRRC28-201ENST00000301981 HNRNPUL2Q1KMD3 747 aaKnown RBP11.71□□□□□ -0.54
LRRC28-201ENST00000301981 ATP1B4Q9UN42 357 aaPredicted RBP11.69□□□□□ -0.54
LRRC28-201ENST00000301981 ITGAEP38570 1179 aa11.66□□□□□ -0.54
LRRC28-201ENST00000301981 MYO15BQ96JP2 1530 aa11.65□□□□□ -0.54
LRRC28-201ENST00000301981 GTF3C3Q9Y5Q9 886 aa11.63□□□□□ -0.55
LRRC28-201ENST00000301981 DIEXFQ68CQ4 756 aaKnown RBP11.6□□□□□ -0.55
LRRC28-201ENST00000301981 CNGB1Q14028 1251 aaPredicted RBP11.57□□□□□ -0.56
LRRC28-201ENST00000301981 SCAF1Q9H7N4 1312 aaKnown RBP11.51□□□□□ -0.57
LRRC28-201ENST00000301981 BCANQ96GW7 911 aa11.51□□□□□ -0.57
LRRC28-201ENST00000301981 NEUROD1Q13562 356 aa11.43□□□□□ -0.58
LRRC28-201ENST00000301981 ERICH6Q7L0X2 663 aa11.42□□□□□ -0.58
LRRC28-201ENST00000301981 ACIN1Q9UKV3 1341 aaKnown RBP11.39□□□□□ -0.59
LRRC28-201ENST00000301981 POLR3GLQ9BT43 218 aa11.33□□□□□ -0.6
LRRC28-201ENST00000301981 NEFLP07196 543 aa11.31□□□□□ -0.6
LRRC28-201ENST00000301981 PABPN1Q86U42 306 aaKnown RBP eCLIP11.3□□□□□ -0.6
LRRC28-201ENST00000301981 ZNF316A6NFI3 1004 aaPredicted RBP11.23□□□□□ -0.61
LRRC28-201ENST00000301981 ABCC9O60706 1549 aa11.21□□□□□ -0.62
LRRC28-201ENST00000301981 MIER1Q8N108 512 aa11.19□□□□□ -0.62
LRRC28-201ENST00000301981 FAM50AQ14320 339 aaKnown RBP11.18□□□□□ -0.62
LRRC28-201ENST00000301981 DCAF1Q9Y4B6 1507 aa11.16□□□□□ -0.62
LRRC28-201ENST00000301981 HIRIP3Q9BW71 556 aaPredicted RBP11.15□□□□□ -0.62
LRRC28-201ENST00000301981 P3H3Q8IVL6 736 aa11.13□□□□□ -0.63
LRRC28-201ENST00000301981 ARID3CA6NKF2 412 aa11.1□□□□□ -0.63
LRRC28-201ENST00000301981 SENP3-EIF4A1A0A087X0R7 540 aa11.1□□□□□ -0.63
LRRC28-201ENST00000301981 AEBP2Q6ZN18 517 aaPredicted RBP11.09□□□□□ -0.63
LRRC28-201ENST00000301981 SCRIBQ14160 1630 aa11.08□□□□□ -0.64
LRRC28-201ENST00000301981 ZCCHC6Q5VYS8 1495 aaKnown RBP11.07□□□□□ -0.64
LRRC28-201ENST00000301981 IRX6P78412 446 aaPredicted RBP11.05□□□□□ -0.64
LRRC28-201ENST00000301981 FKBP8Q14318 412 aa11.05□□□□□ -0.64
LRRC28-201ENST00000301981 TRIM52Q96A61 297 aa11.03□□□□□ -0.64
LRRC28-201ENST00000301981 CSRNP3Q8WYN3 585 aa11.02□□□□□ -0.65
LRRC28-201ENST00000301981 DDX10Q13206 875 aaKnown RBP11.02□□□□□ -0.65
LRRC28-201ENST00000301981 ZNF326Q5BKZ1 582 aaKnown RBP11□□□□□ -0.65
LRRC28-201ENST00000301981 ANP32CO43423 234 aa10.91□□□□□ -0.66
LRRC28-201ENST00000301981 SALL2Q9Y467 1007 aaPredicted RBP10.88□□□□□ -0.67
LRRC28-201ENST00000301981 NPM2Q86SE8 214 aaKnown RBP10.88□□□□□ -0.67
LRRC28-201ENST00000301981 CCDC180Q9P1Z9 1646 aa10.87□□□□□ -0.67
LRRC28-201ENST00000301981 RSF1Q96T23 1441 aaPredicted RBP10.86□□□□□ -0.67
LRRC28-201ENST00000301981 NBR1Q14596 966 aa10.86□□□□□ -0.67
LRRC28-201ENST00000301981 FAM9BQ8IZU0 186 aa10.85□□□□□ -0.67
LRRC28-201ENST00000301981 HNRNPUQ00839 825 aaKnown RBP eCLIP10.84□□□□□ -0.67
LRRC28-201ENST00000301981 CDK11AQ9UQ88 783 aaPredicted RBP10.84□□□□□ -0.67
LRRC28-201ENST00000301981 BCL11AQ9H165 835 aa10.84□□□□□ -0.67
LRRC28-201ENST00000301981 CHIC2Q9UKJ5 165 aa10.81□□□□□ -0.68
LRRC28-201ENST00000301981 SLC4A1APQ9BWU0 796 aaKnown RBP10.81□□□□□ -0.68
LRRC28-201ENST00000301981 MYT1LQ9UL68 1186 aa10.81□□□□□ -0.68
LRRC28-201ENST00000301981 CEP162Q5TB80 1403 aa10.8□□□□□ -0.68
LRRC28-201ENST00000301981 DAXXQ9UER7 740 aaPredicted RBP10.79□□□□□ -0.68
LRRC28-201ENST00000301981 KCNH8Q96L42 1107 aa10.79□□□□□ -0.68
LRRC28-201ENST00000301981 SIN3AQ96ST3 1273 aa10.79□□□□□ -0.68
LRRC28-201ENST00000301981 RTL5Q5HYW3 569 aaPredicted RBP10.78□□□□□ -0.68
LRRC28-201ENST00000301981 SUPT16HQ9Y5B9 1047 aaKnown RBP10.78□□□□□ -0.68
LRRC28-201ENST00000301981 CECR2Q9BXF3 1484 aa10.75□□□□□ -0.69
LRRC28-201ENST00000301981 SOGA1O94964 1423 aa10.74□□□□□ -0.69
LRRC28-201ENST00000301981 RB1CC1Q8TDY2 1594 aa10.74□□□□□ -0.69
LRRC28-201ENST00000301981 TRHP20396 242 aaPredicted RBP10.74□□□□□ -0.69
LRRC28-201ENST00000301981 CLSPNQ9HAW4 1339 aa10.74□□□□□ -0.69
LRRC28-201ENST00000301981 ZNF777Q9ULD5 760 aaPredicted RBP10.72□□□□□ -0.69
LRRC28-201ENST00000301981 FBLN2P98095 1184 aa10.7□□□□□ -0.7
LRRC28-201ENST00000301981 CLIP1P30622 1438 aa10.7□□□□□ -0.7
LRRC28-201ENST00000301981 ABCC8Q09428 1581 aa10.68□□□□□ -0.7
LRRC28-201ENST00000301981 ARXQ96QS3 562 aa10.67□□□□□ -0.7
LRRC28-201ENST00000301981 SENP3Q9H4L4 574 aaPredicted RBP10.67□□□□□ -0.7
LRRC28-201ENST00000301981 PLPPR3Q6T4P5 718 aa10.66□□□□□ -0.7
LRRC28-201ENST00000301981 ANP32EQ9BTT0 268 aa10.66□□□□□ -0.7
LRRC28-201ENST00000301981 RRP7BPQ9NSQ0 103 aa10.66□□□□□ -0.7
LRRC28-201ENST00000301981 RTN4Q9NQC3 1192 aaKnown RBP10.66□□□□□ -0.7
LRRC28-201ENST00000301981 KANK4Q5T7N3 995 aaPredicted RBP10.65□□□□□ -0.7
LRRC28-201ENST00000301981 TONSLQ96HA7 1378 aa10.65□□□□□ -0.7
LRRC28-201ENST00000301981 CCDC88BA6NC98 1476 aa10.62□□□□□ -0.71
LRRC28-201ENST00000301981 EIF5BO60841 1220 aaKnown RBP10.62□□□□□ -0.71
LRRC28-201ENST00000301981 MRS2Q9HD23 443 aa10.61□□□□□ -0.71
LRRC28-201ENST00000301981 KDM2AQ9Y2K7 1162 aa10.61□□□□□ -0.71
LRRC28-201ENST00000301981 TSHZ2Q9NRE2 1034 aa10.61□□□□□ -0.71
LRRC28-201ENST00000301981 B4GALNT3Q6L9W6 998 aa10.6□□□□□ -0.71
LRRC28-201ENST00000301981 ANP32AP39687 249 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms