RNA–Protein interactions for RNA: ENST00000559433.5

LRRC28-214, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 1,045 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-214ENST00000559433 NISCHQ9Y2I1 1504 aa30.94■■■□□ 2.54
LRRC28-214ENST00000559433 CCDC180Q9P1Z9 1646 aa27.67■■■□□ 2.02
LRRC28-214ENST00000559433 ABCC9O60706 1549 aa27.21■■□□□ 1.95
LRRC28-214ENST00000559433 RB1CC1Q8TDY2 1594 aa26.11■■□□□ 1.77
LRRC28-214ENST00000559433 NACADO15069 1562 aa26.01■■□□□ 1.75
LRRC28-214ENST00000559433 DCAF8L2P0C7V8 631 aa25.92■■□□□ 1.74
LRRC28-214ENST00000559433 MYO15BQ96JP2 1530 aa25.76■■□□□ 1.71
LRRC28-214ENST00000559433 ZCCHC6Q5VYS8 1495 aaKnown RBP25.74■■□□□ 1.71
LRRC28-214ENST00000559433 DCAF1Q9Y4B6 1507 aa25.58■■□□□ 1.69
LRRC28-214ENST00000559433 UNC13AQ9UPW8 1703 aa25.58■■□□□ 1.69
LRRC28-214ENST00000559433 PABPN1Q86U42 306 aaKnown RBP eCLIP25.35■■□□□ 1.65
LRRC28-214ENST00000559433 BICRAQ9NZM4 1560 aa25.31■■□□□ 1.64
LRRC28-214ENST00000559433 SCRIBQ14160 1630 aa25.23■■□□□ 1.63
LRRC28-214ENST00000559433 DNAJC5BQ9UF47 199 aa25.08■■□□□ 1.61
LRRC28-214ENST00000559433 SHROOM4Q9ULL8 1493 aa25.02■■□□□ 1.6
LRRC28-214ENST00000559433 EIF4G1Q04637 1599 aaKnown RBP24.67■■□□□ 1.54
LRRC28-214ENST00000559433 CC2D2AQ9P2K1 1620 aa24.63■■□□□ 1.53
LRRC28-214ENST00000559433 CECR2Q9BXF3 1484 aa24.46■■□□□ 1.51
LRRC28-214ENST00000559433 SMARCA4P51532 1647 aa24.09■■□□□ 1.45
LRRC28-214ENST00000559433 BAZ1AQ9NRL2 1556 aaPredicted RBP24.02■■□□□ 1.44
LRRC28-214ENST00000559433 NCAPD3P42695 1498 aa23.96■■□□□ 1.43
LRRC28-214ENST00000559433 ATAD2BQ9ULI0 1458 aa23.96■■□□□ 1.43
LRRC28-214ENST00000559433 SMARCA2P51531 1590 aa23.95■■□□□ 1.43
LRRC28-214ENST00000559433 CHIC1Q5VXU3 224 aa23.93■■□□□ 1.42
LRRC28-214ENST00000559433 AEBP2Q6ZN18 517 aaPredicted RBP23.91■■□□□ 1.42
LRRC28-214ENST00000559433 HMGXB3Q12766 1538 aa23.87■■□□□ 1.41
LRRC28-214ENST00000559433 MROH2BQ7Z745 1585 aa23.85■■□□□ 1.41
LRRC28-214ENST00000559433 PEG3Q9GZU2 1588 aa23.83■■□□□ 1.41
LRRC28-214ENST00000559433 BAZ1BQ9UIG0 1483 aaKnown RBP23.78■■□□□ 1.4
LRRC28-214ENST00000559433 WIZO95785 1651 aa23.63■■□□□ 1.37
LRRC28-214ENST00000559433 ERCC6Q03468 1493 aa23.49■■□□□ 1.35
LRRC28-214ENST00000559433 NESP48681 1621 aa23.48■■□□□ 1.35
LRRC28-214ENST00000559433 RSF1Q96T23 1441 aaPredicted RBP23.47■■□□□ 1.35
LRRC28-214ENST00000559433 LAMC3Q9Y6N6 1575 aa23.41■■□□□ 1.34
LRRC28-214ENST00000559433 TOP2AP11388 1531 aaKnown RBP23.34■■□□□ 1.33
LRRC28-214ENST00000559433 CUX2O14529 1486 aa23.29■■□□□ 1.32
LRRC28-214ENST00000559433 KIF21AQ7Z4S6 1674 aa23.27■■□□□ 1.32
LRRC28-214ENST00000559433 CADPSQ9ULU8 1353 aa23.25■■□□□ 1.31
LRRC28-214ENST00000559433 PDS5BQ9NTI5 1447 aa23.23■■□□□ 1.31
LRRC28-214ENST00000559433 THOC2Q8NI27 1593 aaKnown RBP23.22■■□□□ 1.31
LRRC28-214ENST00000559433 CFTRP13569 1480 aa23.08■■□□□ 1.29
LRRC28-214ENST00000559433 CCDC88BA6NC98 1476 aa23.04■■□□□ 1.28
LRRC28-214ENST00000559433 PRDM2Q13029 1718 aa23.03■■□□□ 1.28
LRRC28-214ENST00000559433 MRC2Q9UBG0 1479 aa23.03■■□□□ 1.28
LRRC28-214ENST00000559433 CEP164Q9UPV0 1460 aa23.03■■□□□ 1.28
LRRC28-214ENST00000559433 FANCD2Q9BXW9 1451 aa23.02■■□□□ 1.28
LRRC28-214ENST00000559433 WDR62O43379 1518 aa22.97■■□□□ 1.27
LRRC28-214ENST00000559433 DNAJC5Q9H3Z4 198 aa22.85■■□□□ 1.25
LRRC28-214ENST00000559433 URB2Q14146 1524 aaKnown RBP22.81■■□□□ 1.24
LRRC28-214ENST00000559433 SUPT5HO00267 1087 aaKnown RBP22.74■■□□□ 1.23
LRRC28-214ENST00000559433 TOPBP1Q92547 1522 aa22.64■■□□□ 1.21
LRRC28-214ENST00000559433 DNMBPQ6XZF7 1577 aa22.61■■□□□ 1.21
LRRC28-214ENST00000559433 ABCC8Q09428 1581 aa22.6■■□□□ 1.21
LRRC28-214ENST00000559433 IFT140Q96RY7 1462 aa22.54■■□□□ 1.2
LRRC28-214ENST00000559433 ZNF608Q9ULD9 1512 aaPredicted RBP22.46■■□□□ 1.19
LRRC28-214ENST00000559433 POLA1P09884 1462 aaPredicted RBP22.42■■□□□ 1.18
LRRC28-214ENST00000559433 TARBP1Q13395 1621 aaKnown RBP22.42■■□□□ 1.18
LRRC28-214ENST00000559433 EIF4G3O43432 1585 aaKnown RBP22.41■■□□□ 1.18
LRRC28-214ENST00000559433 CUX1P39880 1505 aa22.4■■□□□ 1.18
LRRC28-214ENST00000559433 FGD5Q6ZNL6 1462 aa22.35■■□□□ 1.17
LRRC28-214ENST00000559433 RAD54L2Q9Y4B4 1467 aa22.33■■□□□ 1.16
LRRC28-214ENST00000559433 SOGA1O94964 1423 aa22.31■■□□□ 1.16
LRRC28-214ENST00000559433 AQRO60306 1485 aaKnown RBP eCLIP22.28■■□□□ 1.16
LRRC28-214ENST00000559433 OSCARQ8IYS5 282 aa22.28■■□□□ 1.16
LRRC28-214ENST00000559433 WDR97A6NE52 1622 aa22.24■■□□□ 1.15
LRRC28-214ENST00000559433 TDRD9Q8NDG6 1382 aaKnown RBP22.2■■□□□ 1.14
LRRC28-214ENST00000559433 CHD1O14646 1710 aa22.2■■□□□ 1.14
LRRC28-214ENST00000559433 BIVM-ERCC5R4GMW8 1640 aa22.19■■□□□ 1.14
LRRC28-214ENST00000559433 TOP2BQ02880 1626 aa22.17■■□□□ 1.14
LRRC28-214ENST00000559433 SYNJ1O43426 1573 aa22.16■■□□□ 1.14
LRRC28-214ENST00000559433 WRNQ14191 1432 aaPredicted RBP eCLIP22.15■■□□□ 1.14
LRRC28-214ENST00000559433 PBRM1Q86U86 1689 aa22.12■■□□□ 1.13
LRRC28-214ENST00000559433 ABCA10Q8WWZ4 1543 aa22.11■■□□□ 1.13
LRRC28-214ENST00000559433 SNAPC4Q5SXM2 1469 aa22.1■■□□□ 1.13
LRRC28-214ENST00000559433 ABCA5Q8WWZ7 1642 aa22.09■■□□□ 1.13
LRRC28-214ENST00000559433 GRIN2BQ13224 1484 aa22.09■■□□□ 1.13
LRRC28-214ENST00000559433 FBLN2P98095 1184 aa22.07■■□□□ 1.12
LRRC28-214ENST00000559433 TRIM41Q8WV44 630 aa22.07■■□□□ 1.12
LRRC28-214ENST00000559433 GAPVD1Q14C86 1478 aa22.06■■□□□ 1.12
LRRC28-214ENST00000559433 MAGI1Q96QZ7 1491 aaPredicted RBP22.06■■□□□ 1.12
LRRC28-214ENST00000559433 RIMBP3CA6NJZ7 1639 aa21.99■■□□□ 1.11
LRRC28-214ENST00000559433 RIMBP3BA6NNM3 1639 aa21.99■■□□□ 1.11
LRRC28-214ENST00000559433 RIMBP3Q9UFD9 1639 aa21.99■■□□□ 1.11
LRRC28-214ENST00000559433 SYNJ2O15056 1496 aa21.97■■□□□ 1.11
LRRC28-214ENST00000559433 CHMP7Q8WUX9 453 aaPredicted RBP21.95■■□□□ 1.1
LRRC28-214ENST00000559433 ARHGEF11O15085 1522 aa21.94■■□□□ 1.1
LRRC28-214ENST00000559433 ADAMTS12P58397 1594 aa21.89■■□□□ 1.09
LRRC28-214ENST00000559433 CLASP1Q7Z460 1538 aa21.89■■□□□ 1.09
LRRC28-214ENST00000559433 ERICH3Q5RHP9 1530 aa21.85■■□□□ 1.09
LRRC28-214ENST00000559433 GRIN2AQ12879 1464 aa21.82■■□□□ 1.08
LRRC28-214ENST00000559433 FHAD1B1AJZ9 1412 aa21.79■■□□□ 1.08
LRRC28-214ENST00000559433 CYB5RLQ6IPT4 315 aa21.74■■□□□ 1.07
LRRC28-214ENST00000559433 ARAP1Q96P48 1450 aa21.74■■□□□ 1.07
LRRC28-214ENST00000559433 CEP170Q5SW79 1584 aa21.74■■□□□ 1.07
LRRC28-214ENST00000559433 NUP160Q12769 1436 aa21.71■■□□□ 1.07
LRRC28-214ENST00000559433 KIF27Q86VH2 1401 aa21.71■■□□□ 1.07
LRRC28-214ENST00000559433 CUL7Q14999 1698 aa21.66■■□□□ 1.06
LRRC28-214ENST00000559433 SHROOM2Q13796 1616 aa21.61■■□□□ 1.05
LRRC28-214ENST00000559433 IGF1RP08069 1367 aa21.61■■□□□ 1.05
LRRC28-214ENST00000559433 RUSC2Q8N2Y8 1516 aa21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 146.8 ms