RNA–Protein interactions for RNA: ENST00000447360.6

LRRC28-203, Transcript of leucine rich repeat containing 28, humanhuman

TSL 1 (best) BASIC

Gene LRRC28, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-203ENST00000447360 NISCHQ9Y2I1 1504 aa18.19■□□□□ 0.5
LRRC28-203ENST00000447360 ABCC9O60706 1549 aa16.81■□□□□ 0.28
LRRC28-203ENST00000447360 CCDC180Q9P1Z9 1646 aa16.42■□□□□ 0.22
LRRC28-203ENST00000447360 AEBP2Q6ZN18 517 aaPredicted RBP16.18■□□□□ 0.18
LRRC28-203ENST00000447360 DNAJC5BQ9UF47 199 aa16.14■□□□□ 0.17
LRRC28-203ENST00000447360 RB1CC1Q8TDY2 1594 aa15.85■□□□□ 0.13
LRRC28-203ENST00000447360 NACADO15069 1562 aa15.67■□□□□ 0.1
LRRC28-203ENST00000447360 PABPN1Q86U42 306 aaKnown RBP eCLIP15.63■□□□□ 0.09
LRRC28-203ENST00000447360 CHIC1Q5VXU3 224 aa15.57■□□□□ 0.08
LRRC28-203ENST00000447360 DCAF8L2P0C7V8 631 aa15.53■□□□□ 0.08
LRRC28-203ENST00000447360 MYO15BQ96JP2 1530 aa15.38■□□□□ 0.05
LRRC28-203ENST00000447360 BICRAQ9NZM4 1560 aa15.38■□□□□ 0.05
LRRC28-203ENST00000447360 UNC13AQ9UPW8 1703 aa15.35■□□□□ 0.05
LRRC28-203ENST00000447360 SHROOM4Q9ULL8 1493 aa15.22■□□□□ 0.03
LRRC28-203ENST00000447360 CECR2Q9BXF3 1484 aa15.21■□□□□ 0.03
LRRC28-203ENST00000447360 CC2D2AQ9P2K1 1620 aa15.15■□□□□ 0.02
LRRC28-203ENST00000447360 DNAJC5Q9H3Z4 198 aa15.14■□□□□ 0.01
LRRC28-203ENST00000447360 EIF4G1Q04637 1599 aaKnown RBP15.05■□□□□ -0
LRRC28-203ENST00000447360 DCAF1Q9Y4B6 1507 aa15.03■□□□□ -0
LRRC28-203ENST00000447360 ZCCHC6Q5VYS8 1495 aaKnown RBP14.99□□□□□ -0.01
LRRC28-203ENST00000447360 SCRIBQ14160 1630 aa14.92□□□□□ -0.02
LRRC28-203ENST00000447360 CUX2O14529 1486 aa14.69□□□□□ -0.06
LRRC28-203ENST00000447360 ERCC6Q03468 1493 aa14.57□□□□□ -0.08
LRRC28-203ENST00000447360 NCAPD3P42695 1498 aa14.51□□□□□ -0.09
LRRC28-203ENST00000447360 ATAD2BQ9ULI0 1458 aa14.39□□□□□ -0.11
LRRC28-203ENST00000447360 NESP48681 1621 aa14.33□□□□□ -0.12
LRRC28-203ENST00000447360 HMGXB3Q12766 1538 aa14.32□□□□□ -0.12
LRRC28-203ENST00000447360 SMARCA2P51531 1590 aa14.31□□□□□ -0.12
LRRC28-203ENST00000447360 TRIM41Q8WV44 630 aa14.26□□□□□ -0.13
LRRC28-203ENST00000447360 THOC2Q8NI27 1593 aaKnown RBP14.23□□□□□ -0.13
LRRC28-203ENST00000447360 SMARCA4P51532 1647 aa14.23□□□□□ -0.13
LRRC28-203ENST00000447360 BAZ1BQ9UIG0 1483 aaKnown RBP14.21□□□□□ -0.13
LRRC28-203ENST00000447360 LAMC3Q9Y6N6 1575 aa14.19□□□□□ -0.14
LRRC28-203ENST00000447360 PDS5BQ9NTI5 1447 aa14.18□□□□□ -0.14
LRRC28-203ENST00000447360 BAZ1AQ9NRL2 1556 aaPredicted RBP14.14□□□□□ -0.15
LRRC28-203ENST00000447360 PEG3Q9GZU2 1588 aa14.13□□□□□ -0.15
LRRC28-203ENST00000447360 KIF21AQ7Z4S6 1674 aa14.06□□□□□ -0.16
LRRC28-203ENST00000447360 CADPSQ9ULU8 1353 aa14.06□□□□□ -0.16
LRRC28-203ENST00000447360 MRC2Q9UBG0 1479 aa14.04□□□□□ -0.16
LRRC28-203ENST00000447360 WDR62O43379 1518 aa14□□□□□ -0.17
LRRC28-203ENST00000447360 OSCARQ8IYS5 282 aa14□□□□□ -0.17
LRRC28-203ENST00000447360 MROH2BQ7Z745 1585 aa13.99□□□□□ -0.17
LRRC28-203ENST00000447360 CEP164Q9UPV0 1460 aa13.9□□□□□ -0.18
LRRC28-203ENST00000447360 FANCD2Q9BXW9 1451 aa13.86□□□□□ -0.19
LRRC28-203ENST00000447360 CFTRP13569 1480 aa13.8□□□□□ -0.2
LRRC28-203ENST00000447360 WIZO95785 1651 aa13.75□□□□□ -0.21
LRRC28-203ENST00000447360 PHF23Q9BUL5 403 aaPredicted RBP13.75□□□□□ -0.21
LRRC28-203ENST00000447360 URB2Q14146 1524 aaKnown RBP13.74□□□□□ -0.21
LRRC28-203ENST00000447360 RIMBP3CA6NJZ7 1639 aa13.74□□□□□ -0.21
LRRC28-203ENST00000447360 RIMBP3BA6NNM3 1639 aa13.74□□□□□ -0.21
LRRC28-203ENST00000447360 RIMBP3Q9UFD9 1639 aa13.74□□□□□ -0.21
LRRC28-203ENST00000447360 ARHGEF11O15085 1522 aa13.7□□□□□ -0.22
LRRC28-203ENST00000447360 CYB5RLQ6IPT4 315 aa13.67□□□□□ -0.22
LRRC28-203ENST00000447360 IFT140Q96RY7 1462 aa13.66□□□□□ -0.22
LRRC28-203ENST00000447360 ZNF608Q9ULD9 1512 aaPredicted RBP13.64□□□□□ -0.23
LRRC28-203ENST00000447360 SENP3Q9H4L4 574 aaPredicted RBP13.64□□□□□ -0.23
LRRC28-203ENST00000447360 TRHP20396 242 aaPredicted RBP13.63□□□□□ -0.23
LRRC28-203ENST00000447360 RSF1Q96T23 1441 aaPredicted RBP13.61□□□□□ -0.23
LRRC28-203ENST00000447360 TOP2AP11388 1531 aaKnown RBP13.6□□□□□ -0.23
LRRC28-203ENST00000447360 ARAP1Q96P48 1450 aa13.55□□□□□ -0.24
LRRC28-203ENST00000447360 TOPBP1Q92547 1522 aa13.54□□□□□ -0.24
LRRC28-203ENST00000447360 ABCC8Q09428 1581 aa13.54□□□□□ -0.24
LRRC28-203ENST00000447360 EIF4G3O43432 1585 aaKnown RBP13.5□□□□□ -0.25
LRRC28-203ENST00000447360 FBLN2P98095 1184 aa13.49□□□□□ -0.25
LRRC28-203ENST00000447360 AQRO60306 1485 aaKnown RBP eCLIP13.48□□□□□ -0.25
LRRC28-203ENST00000447360 CCDC88BA6NC98 1476 aa13.48□□□□□ -0.25
LRRC28-203ENST00000447360 PRDM2Q13029 1718 aa13.47□□□□□ -0.25
LRRC28-203ENST00000447360 DNMBPQ6XZF7 1577 aa13.45□□□□□ -0.26
LRRC28-203ENST00000447360 TARBP1Q13395 1621 aaKnown RBP13.42□□□□□ -0.26
LRRC28-203ENST00000447360 CHD1O14646 1710 aa13.42□□□□□ -0.26
LRRC28-203ENST00000447360 POLA1P09884 1462 aaPredicted RBP13.39□□□□□ -0.27
LRRC28-203ENST00000447360 TDRD9Q8NDG6 1382 aaKnown RBP13.36□□□□□ -0.27
LRRC28-203ENST00000447360 CHMP7Q8WUX9 453 aaPredicted RBP13.36□□□□□ -0.27
LRRC28-203ENST00000447360 SOGA1O94964 1423 aa13.35□□□□□ -0.27
LRRC28-203ENST00000447360 CLASP1Q7Z460 1538 aa13.34□□□□□ -0.27
LRRC28-203ENST00000447360 RAD54L2Q9Y4B4 1467 aa13.33□□□□□ -0.28
LRRC28-203ENST00000447360 SNAPC4Q5SXM2 1469 aa13.32□□□□□ -0.28
LRRC28-203ENST00000447360 SYNJ1O43426 1573 aa13.31□□□□□ -0.28
LRRC28-203ENST00000447360 MAGI1Q96QZ7 1491 aaPredicted RBP13.3□□□□□ -0.28
LRRC28-203ENST00000447360 WDR97A6NE52 1622 aa13.3□□□□□ -0.28
LRRC28-203ENST00000447360 SYNJ2O15056 1496 aa13.27□□□□□ -0.29
LRRC28-203ENST00000447360 GRIN2BQ13224 1484 aa13.27□□□□□ -0.29
LRRC28-203ENST00000447360 GAPVD1Q14C86 1478 aa13.26□□□□□ -0.29
LRRC28-203ENST00000447360 FGD5Q6ZNL6 1462 aa13.23□□□□□ -0.29
LRRC28-203ENST00000447360 CUX1P39880 1505 aa13.16□□□□□ -0.3
LRRC28-203ENST00000447360 ABCA10Q8WWZ4 1543 aa13.09□□□□□ -0.31
LRRC28-203ENST00000447360 GRIN2AQ12879 1464 aa13.08□□□□□ -0.32
LRRC28-203ENST00000447360 ERCC6L2Q5T890 1561 aa13.07□□□□□ -0.32
LRRC28-203ENST00000447360 NUP160Q12769 1436 aa13.07□□□□□ -0.32
LRRC28-203ENST00000447360 PBRM1Q86U86 1689 aa13.06□□□□□ -0.32
LRRC28-203ENST00000447360 CEP170Q5SW79 1584 aa13.05□□□□□ -0.32
LRRC28-203ENST00000447360 ABCA5Q8WWZ7 1642 aa13.05□□□□□ -0.32
LRRC28-203ENST00000447360 FHAD1B1AJZ9 1412 aa13□□□□□ -0.33
LRRC28-203ENST00000447360 WRNQ14191 1432 aaPredicted RBP eCLIP13□□□□□ -0.33
LRRC28-203ENST00000447360 FAM69CQ0P6D2 419 aa13□□□□□ -0.33
LRRC28-203ENST00000447360 SHROOM2Q13796 1616 aa12.99□□□□□ -0.33
LRRC28-203ENST00000447360 ADAMTS12P58397 1594 aa12.98□□□□□ -0.33
LRRC28-203ENST00000447360 ABCC10Q5T3U5 1492 aa12.97□□□□□ -0.33
LRRC28-203ENST00000447360 KDM4FA0A1W2PPD8 638 aa12.97□□□□□ -0.33
LRRC28-203ENST00000447360 NPM1P06748 294 aaKnown RBP eCLIP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms