RNA–Protein interactions for RNA: ENST00000558471.5

LRRC28-206, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 793 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-206ENST00000558471 NISCHQ9Y2I1 1504 aa30.15■■■□□ 2.42
LRRC28-206ENST00000558471 CCDC180Q9P1Z9 1646 aa26.73■■□□□ 1.87
LRRC28-206ENST00000558471 ABCC9O60706 1549 aa26.09■■□□□ 1.77
LRRC28-206ENST00000558471 DCAF8L2P0C7V8 631 aa25.21■■□□□ 1.63
LRRC28-206ENST00000558471 ZCCHC6Q5VYS8 1495 aaKnown RBP25.12■■□□□ 1.61
LRRC28-206ENST00000558471 NACADO15069 1562 aa25.11■■□□□ 1.61
LRRC28-206ENST00000558471 RB1CC1Q8TDY2 1594 aa25.11■■□□□ 1.61
LRRC28-206ENST00000558471 MYO15BQ96JP2 1530 aa24.98■■□□□ 1.59
LRRC28-206ENST00000558471 DCAF1Q9Y4B6 1507 aa24.92■■□□□ 1.58
LRRC28-206ENST00000558471 UNC13AQ9UPW8 1703 aa24.61■■□□□ 1.53
LRRC28-206ENST00000558471 PABPN1Q86U42 306 aaKnown RBP eCLIP24.43■■□□□ 1.5
LRRC28-206ENST00000558471 SCRIBQ14160 1630 aa24.43■■□□□ 1.5
LRRC28-206ENST00000558471 BICRAQ9NZM4 1560 aa24.38■■□□□ 1.49
LRRC28-206ENST00000558471 SHROOM4Q9ULL8 1493 aa24.05■■□□□ 1.44
LRRC28-206ENST00000558471 DNAJC5BQ9UF47 199 aa23.9■■□□□ 1.42
LRRC28-206ENST00000558471 EIF4G1Q04637 1599 aaKnown RBP23.71■■□□□ 1.39
LRRC28-206ENST00000558471 CC2D2AQ9P2K1 1620 aa23.61■■□□□ 1.37
LRRC28-206ENST00000558471 CECR2Q9BXF3 1484 aa23.51■■□□□ 1.35
LRRC28-206ENST00000558471 SMARCA4P51532 1647 aa23.37■■□□□ 1.33
LRRC28-206ENST00000558471 BAZ1AQ9NRL2 1556 aaPredicted RBP23.35■■□□□ 1.33
LRRC28-206ENST00000558471 MROH2BQ7Z745 1585 aa23.26■■□□□ 1.31
LRRC28-206ENST00000558471 ATAD2BQ9ULI0 1458 aa23.22■■□□□ 1.31
LRRC28-206ENST00000558471 NCAPD3P42695 1498 aa23.18■■□□□ 1.3
LRRC28-206ENST00000558471 SMARCA2P51531 1590 aa23.17■■□□□ 1.3
LRRC28-206ENST00000558471 PEG3Q9GZU2 1588 aa23.13■■□□□ 1.29
LRRC28-206ENST00000558471 HMGXB3Q12766 1538 aa23.05■■□□□ 1.28
LRRC28-206ENST00000558471 WIZO95785 1651 aa23.03■■□□□ 1.28
LRRC28-206ENST00000558471 RSF1Q96T23 1441 aaPredicted RBP23.02■■□□□ 1.28
LRRC28-206ENST00000558471 BAZ1BQ9UIG0 1483 aaKnown RBP23.02■■□□□ 1.28
LRRC28-206ENST00000558471 TOP2AP11388 1531 aaKnown RBP22.74■■□□□ 1.23
LRRC28-206ENST00000558471 NESP48681 1621 aa22.62■■□□□ 1.21
LRRC28-206ENST00000558471 SUPT5HO00267 1087 aaKnown RBP22.56■■□□□ 1.2
LRRC28-206ENST00000558471 LAMC3Q9Y6N6 1575 aa22.55■■□□□ 1.2
LRRC28-206ENST00000558471 CADPSQ9ULU8 1353 aa22.52■■□□□ 1.2
LRRC28-206ENST00000558471 CCDC88BA6NC98 1476 aa22.51■■□□□ 1.19
LRRC28-206ENST00000558471 ERCC6Q03468 1493 aa22.45■■□□□ 1.18
LRRC28-206ENST00000558471 CFTRP13569 1480 aa22.4■■□□□ 1.18
LRRC28-206ENST00000558471 PDS5BQ9NTI5 1447 aa22.39■■□□□ 1.17
LRRC28-206ENST00000558471 KIF21AQ7Z4S6 1674 aa22.36■■□□□ 1.17
LRRC28-206ENST00000558471 FANCD2Q9BXW9 1451 aa22.26■■□□□ 1.15
LRRC28-206ENST00000558471 PRDM2Q13029 1718 aa22.26■■□□□ 1.15
LRRC28-206ENST00000558471 THOC2Q8NI27 1593 aaKnown RBP22.22■■□□□ 1.15
LRRC28-206ENST00000558471 CEP164Q9UPV0 1460 aa22.21■■□□□ 1.15
LRRC28-206ENST00000558471 CUX2O14529 1486 aa22.15■■□□□ 1.14
LRRC28-206ENST00000558471 MRC2Q9UBG0 1479 aa22.15■■□□□ 1.14
LRRC28-206ENST00000558471 WDR62O43379 1518 aa22.07■■□□□ 1.12
LRRC28-206ENST00000558471 URB2Q14146 1524 aaKnown RBP22.04■■□□□ 1.12
LRRC28-206ENST00000558471 TOPBP1Q92547 1522 aa21.92■■□□□ 1.1
LRRC28-206ENST00000558471 ABCC8Q09428 1581 aa21.91■■□□□ 1.1
LRRC28-206ENST00000558471 DNMBPQ6XZF7 1577 aa21.89■■□□□ 1.09
LRRC28-206ENST00000558471 CUX1P39880 1505 aa21.8■■□□□ 1.08
LRRC28-206ENST00000558471 POLA1P09884 1462 aaPredicted RBP21.73■■□□□ 1.07
LRRC28-206ENST00000558471 IFT140Q96RY7 1462 aa21.73■■□□□ 1.07
LRRC28-206ENST00000558471 FGD5Q6ZNL6 1462 aa21.71■■□□□ 1.07
LRRC28-206ENST00000558471 WRNQ14191 1432 aaPredicted RBP eCLIP21.7■■□□□ 1.06
LRRC28-206ENST00000558471 TARBP1Q13395 1621 aaKnown RBP21.68■■□□□ 1.06
LRRC28-206ENST00000558471 RAD54L2Q9Y4B4 1467 aa21.67■■□□□ 1.06
LRRC28-206ENST00000558471 SOGA1O94964 1423 aa21.67■■□□□ 1.06
LRRC28-206ENST00000558471 ZNF608Q9ULD9 1512 aaPredicted RBP21.66■■□□□ 1.06
LRRC28-206ENST00000558471 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
LRRC28-206ENST00000558471 TOP2BQ02880 1626 aa21.63■■□□□ 1.05
LRRC28-206ENST00000558471 BIVM-ERCC5R4GMW8 1640 aa21.63■■□□□ 1.05
LRRC28-206ENST00000558471 AQRO60306 1485 aaKnown RBP eCLIP21.56■■□□□ 1.04
LRRC28-206ENST00000558471 EIF4G3O43432 1585 aaKnown RBP21.55■■□□□ 1.04
LRRC28-206ENST00000558471 TDRD9Q8NDG6 1382 aaKnown RBP21.54■■□□□ 1.04
LRRC28-206ENST00000558471 WDR97A6NE52 1622 aa21.51■■□□□ 1.03
LRRC28-206ENST00000558471 ABCA10Q8WWZ4 1543 aa21.49■■□□□ 1.03
LRRC28-206ENST00000558471 GAPVD1Q14C86 1478 aa21.4■■□□□ 1.02
LRRC28-206ENST00000558471 DNAJC5Q9H3Z4 198 aa21.4■■□□□ 1.02
LRRC28-206ENST00000558471 ABCA5Q8WWZ7 1642 aa21.4■■□□□ 1.02
LRRC28-206ENST00000558471 GRIN2BQ13224 1484 aa21.37■■□□□ 1.01
LRRC28-206ENST00000558471 PBRM1Q86U86 1689 aa21.36■■□□□ 1.01
LRRC28-206ENST00000558471 SNAPC4Q5SXM2 1469 aa21.33■■□□□ 1.01
LRRC28-206ENST00000558471 OSCARQ8IYS5 282 aa21.31■■□□□ 1
LRRC28-206ENST00000558471 CHD1O14646 1710 aa21.29■■□□□ 1
LRRC28-206ENST00000558471 MAGI1Q96QZ7 1491 aaPredicted RBP21.29■■□□□ 1
LRRC28-206ENST00000558471 TRIM41Q8WV44 630 aa21.29■■□□□ 1
LRRC28-206ENST00000558471 FBLN2P98095 1184 aa21.28■■□□□ 1
LRRC28-206ENST00000558471 CHMP7Q8WUX9 453 aaPredicted RBP21.23■□□□□ 0.99
LRRC28-206ENST00000558471 ERICH3Q5RHP9 1530 aa21.23■□□□□ 0.99
LRRC28-206ENST00000558471 KIF27Q86VH2 1401 aa21.22■□□□□ 0.99
LRRC28-206ENST00000558471 SYNJ2O15056 1496 aa21.22■□□□□ 0.99
LRRC28-206ENST00000558471 ADAMTS12P58397 1594 aa21.17■□□□□ 0.98
LRRC28-206ENST00000558471 IGF1RP08069 1367 aa21.16■□□□□ 0.98
LRRC28-206ENST00000558471 FHAD1B1AJZ9 1412 aa21.15■□□□□ 0.98
LRRC28-206ENST00000558471 CHIC1Q5VXU3 224 aa21.13■□□□□ 0.97
LRRC28-206ENST00000558471 RUSC2Q8N2Y8 1516 aa21.13■□□□□ 0.97
LRRC28-206ENST00000558471 GRIN2AQ12879 1464 aa21.1■□□□□ 0.97
LRRC28-206ENST00000558471 CUL7Q14999 1698 aa21.05■□□□□ 0.96
LRRC28-206ENST00000558471 CLASP1Q7Z460 1538 aa21.04■□□□□ 0.96
LRRC28-206ENST00000558471 CARMIL1Q5VZK9 1371 aa21.02■□□□□ 0.96
LRRC28-206ENST00000558471 CEP170Q5SW79 1584 aa21.01■□□□□ 0.95
LRRC28-206ENST00000558471 NUP160Q12769 1436 aa21■□□□□ 0.95
LRRC28-206ENST00000558471 RIMBP3CA6NJZ7 1639 aa20.94■□□□□ 0.94
LRRC28-206ENST00000558471 RIMBP3BA6NNM3 1639 aa20.94■□□□□ 0.94
LRRC28-206ENST00000558471 RIMBP3Q9UFD9 1639 aa20.94■□□□□ 0.94
LRRC28-206ENST00000558471 ARHGEF11O15085 1522 aa20.94■□□□□ 0.94
LRRC28-206ENST00000558471 RAPGEF2Q9Y4G8 1499 aa20.9■□□□□ 0.94
LRRC28-206ENST00000558471 CSRNP3Q8WYN3 585 aa20.89■□□□□ 0.93
LRRC28-206ENST00000558471 EEA1Q15075 1411 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 279.9 ms