Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.239e-7■■■□□ 16.4
LSM11P83369 ACAP3-206ENST00000467278 2725 ntTSL 1 (best)16.5■□□□□ 0.239e-7■■■□□ 16.4
LSM11P83369 RBCK1-209ENST00000415942 2613 ntTSL 516.47■□□□□ 0.239e-7■■■□□ 16.4
LSM11P83369 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.239e-7■■■□□ 16.4
LSM11P83369 COPS7B-211ENST00000432387 584 ntTSL 416.46■□□□□ 0.239e-7■■■□□ 16.4
LSM11P83369 BLVRB-203ENST00000597870 1392 ntTSL 516.42■□□□□ 0.229e-7■■■□□ 16.4
LSM11P83369 TPCN1-219ENST00000552077 3293 ntTSL 215.3■□□□□ 0.049e-7■■■□□ 16.4
LSM11P83369 COPS7B-214ENST00000449784 978 ntTSL 315.24■□□□□ 0.039e-7■■■□□ 16.4
LSM11P83369 COPS7B-216ENST00000452375 600 ntTSL 415.24■□□□□ 0.039e-7■■■□□ 16.4
LSM11P83369 RBCK1-204ENST00000382214 2752 ntTSL 1 (best)15.09■□□□□ 0.019e-7■■■□□ 16.4
LSM11P83369 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.05■□□□□ -09e-7■■■□□ 16.4
LSM11P83369 VPS29-204ENST00000548259 563 ntTSL 214.98□□□□□ -0.019e-7■■■□□ 16.4
LSM11P83369 USP20-208ENST00000494971 503 ntTSL 314.84□□□□□ -0.039e-7■■■□□ 16.4
LSM11P83369 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.039e-7■■■□□ 16.4
LSM11P83369 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.059e-7■■■□□ 16.4
LSM11P83369 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.079e-7■■■□□ 16.4
LSM11P83369 RGL2-240ENST00000471319 1037 ntTSL 514.59□□□□□ -0.079e-7■■■□□ 16.4
LSM11P83369 VPS29-208ENST00000550267 810 ntTSL 214.5□□□□□ -0.099e-7■■■□□ 16.4
LSM11P83369 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.49□□□□□ -0.099e-7■■■□□ 16.4
LSM11P83369 UBOX5-203ENST00000449731 524 ntTSL 514.45□□□□□ -0.19e-7■■■□□ 16.4
LSM11P83369 COPS7B-222ENST00000492423 689 ntTSL 214.34□□□□□ -0.119e-7■■■□□ 16.4
LSM11P83369 COPS7B-202ENST00000357490 563 ntTSL 414.32□□□□□ -0.129e-7■■■□□ 16.4
LSM11P83369 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.127e-7■■■□□ 16.4
LSM11P83369 COPS7B-208ENST00000412591 571 ntTSL 414.24□□□□□ -0.139e-7■■■□□ 16.4
LSM11P83369 VPS29-207ENST00000549970 818 ntTSL 3 BASIC14.11□□□□□ -0.159e-7■■■□□ 16.4
LSM11P83369 ACAP3-209ENST00000476572 819 ntTSL 513.98□□□□□ -0.179e-7■■■□□ 16.4
LSM11P83369 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC13.9□□□□□ -0.189e-7■■■□□ 16.4
LSM11P83369 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.229e-7■■■□□ 16.4
LSM11P83369 CEP70-206ENST00000468900 1016 ntTSL 513.65□□□□□ -0.229e-7■■■□□ 16.4
LSM11P83369 CEP70-204ENST00000462419 1021 ntTSL 513.65□□□□□ -0.229e-7■■■□□ 16.4
LSM11P83369 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.279e-7■■■□□ 16.4
LSM11P83369 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC13.35□□□□□ -0.274e-18■■■□□ 16.4
LSM11P83369 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.35□□□□□ -0.277e-7■■■□□ 16.4
LSM11P83369 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.289e-7■■■□□ 16.4
LSM11P83369 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC13.16□□□□□ -0.39e-7■■■□□ 16.4
LSM11P83369 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC13.15□□□□□ -0.39e-7■■■□□ 16.4
LSM11P83369 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.324e-18■■■□□ 16.4
LSM11P83369 KDM4B-212ENST00000624683 5076 nt12.94□□□□□ -0.349e-7■■■□□ 16.4
LSM11P83369 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC12.92□□□□□ -0.344e-18■■■□□ 16.4
LSM11P83369 VPS29-209ENST00000551655 766 ntTSL 512.88□□□□□ -0.359e-7■■■□□ 16.4
LSM11P83369 VPS29-203ENST00000546588 1059 ntTSL 3 BASIC12.72□□□□□ -0.379e-7■■■□□ 16.4
LSM11P83369 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC12.57□□□□□ -0.49e-7■■■□□ 16.4
LSM11P83369 CAMSAP1-204ENST00000460094 371 ntTSL 212.53□□□□□ -0.49e-7■■■□□ 16.4
LSM11P83369 AP3B1-205ENST00000519888 519 ntTSL 512.34□□□□□ -0.439e-7■■■□□ 16.4
LSM11P83369 SUPT3H-204ENST00000459689 396 ntTSL 212.32□□□□□ -0.449e-7■■■□□ 16.4
LSM11P83369 HSPA4-204ENST00000615899 2204 ntTSL 5 BASIC12.22□□□□□ -0.459e-7■■■□□ 16.4
LSM11P83369 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC11.91□□□□□ -0.59e-7■■■□□ 16.4
LSM11P83369 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC11.82□□□□□ -0.529e-7■■■□□ 16.4
LSM11P83369 LINC01748-201ENST00000439156 1798 ntTSL 511.82□□□□□ -0.529e-7■■■□□ 16.4
LSM11P83369 CEP70-209ENST00000478673 974 ntTSL 211.81□□□□□ -0.529e-7■■■□□ 16.4
LSM11P83369 CAMSAP1-205ENST00000468150 284 ntTSL 511.72□□□□□ -0.539e-7■■■□□ 16.4
LSM11P83369 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC11.65□□□□□ -0.549e-7■■■□□ 16.4
LSM11P83369 CEP70-208ENST00000474781 2028 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.559e-7■■■□□ 16.4
LSM11P83369 UBOX5-202ENST00000348031 4469 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.579e-7■■■□□ 16.4
LSM11P83369 VPS29-211ENST00000553128 449 ntTSL 311.46□□□□□ -0.579e-7■■■□□ 16.4
LSM11P83369 USP20-202ENST00000358355 4371 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.599e-7■■■□□ 16.4
LSM11P83369 FER-209ENST00000618353 1420 ntTSL 1 (best) BASIC11.37□□□□□ -0.599e-7■■■□□ 16.4
LSM11P83369 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.69e-7■■■□□ 16.4
LSM11P83369 USP20-203ENST00000372429 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.629e-7■■■□□ 16.4
LSM11P83369 HSPA4-201ENST00000304858 4825 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.629e-7■■■□□ 16.4
LSM11P83369 CAMSAP1-202ENST00000389532 7696 ntAPPRIS P2 TSL 5 BASIC10.98□□□□□ -0.659e-7■■■□□ 16.4
LSM11P83369 BLVRB-204ENST00000601346 676 ntTSL 210.79□□□□□ -0.689e-7■■■□□ 16.4
LSM11P83369 UBOX5-201ENST00000217173 4631 ntAPPRIS P4 TSL 1 (best) BASIC10.73□□□□□ -0.699e-7■■■□□ 16.4
LSM11P83369 TPCN1-215ENST00000550873 527 ntTSL 510.71□□□□□ -0.699e-7■■■□□ 16.4
LSM11P83369 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.79e-7■■■□□ 16.4
LSM11P83369 AP3B1-203ENST00000517940 974 ntTSL 210.66□□□□□ -0.79e-7■■■□□ 16.4
LSM11P83369 TPCN1-204ENST00000541517 5173 ntTSL 5 BASIC10.6□□□□□ -0.717e-7■■■□□ 16.4
LSM11P83369 MITF-211ENST00000457080 382 ntTSL 1 (best)10.24□□□□□ -0.779e-7■■■□□ 16.4
LSM11P83369 MITF-216ENST00000495741 473 ntTSL 410.13□□□□□ -0.799e-7■■■□□ 16.4
LSM11P83369 SUCLG1-207ENST00000488234 275 ntTSL 310.1□□□□□ -0.799e-7■■■□□ 16.4
LSM11P83369 CAMSAP1-201ENST00000312405 6054 ntTSL 1 (best) BASIC10.06□□□□□ -0.89e-7■■■□□ 16.4
LSM11P83369 TPCN1-223ENST00000552985 762 ntTSL 39.87□□□□□ -0.839e-7■■■□□ 16.4
LSM11P83369 MARF1-205ENST00000548025 5891 ntAPPRIS ALT1 TSL 1 (best) BASIC9.54□□□□□ -0.889e-7■■■□□ 16.4
LSM11P83369 NUP98-205ENST00000397007 3698 ntTSL 1 (best) BASIC9.5□□□□□ -0.894e-18■■■□□ 16.4
LSM11P83369 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.929e-7■■■□□ 16.4
LSM11P83369 MITF-207ENST00000429090 542 ntTSL 59.23□□□□□ -0.939e-7■■■□□ 16.4
LSM11P83369 MITF-209ENST00000448226 2489 ntAPPRIS ALT1 TSL 5 BASIC9.16□□□□□ -0.949e-7■■■□□ 16.4
LSM11P83369 LINC01748-205ENST00000635616 2143 ntTSL 5 BASIC9.06□□□□□ -0.969e-7■■■□□ 16.4
LSM11P83369 CEP70-210ENST00000481834 2037 ntTSL 1 (best) BASIC9□□□□□ -0.979e-7■■■□□ 16.4
LSM11P83369 MARF1-214ENST00000552553 5053 ntTSL 58.9□□□□□ -0.999e-7■■■□□ 16.4
LSM11P83369 TPCN1-221ENST00000552642 526 ntTSL 48.84□□□□□ -0.999e-7■■■□□ 16.4
LSM11P83369 NUP98-219ENST00000532475 553 ntTSL 48.54□□□□□ -1.044e-18■■■□□ 16.4
LSM11P83369 TP53BP2-213ENST00000496282 481 ntTSL 38.47□□□□□ -1.059e-7■■■□□ 16.4
LSM11P83369 TPCN1-209ENST00000547275 564 ntTSL 48.33□□□□□ -1.089e-7■■■□□ 16.4
LSM11P83369 MARF1-211ENST00000551742 5900 ntAPPRIS ALT1 TSL 1 (best) BASIC8.27□□□□□ -1.099e-7■■■□□ 16.4
LSM11P83369 SUPT3H-205ENST00000475057 1377 ntTSL 28.25□□□□□ -1.099e-7■■■□□ 16.4
LSM11P83369 MARF1-202ENST00000540441 7105 ntTSL 5 BASIC8.18□□□□□ -1.19e-7■■■□□ 16.4
LSM11P83369 AP3B1-201ENST00000255194 5838 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.119e-7■■■□□ 16.4
LSM11P83369 LINC01748-202ENST00000634281 2864 ntTSL 5 BASIC8.04□□□□□ -1.129e-7■■■□□ 16.4
LSM11P83369 TP53BP2-207ENST00000473135 567 ntTSL 47.97□□□□□ -1.139e-7■■■□□ 16.4
LSM11P83369 HSPA4-202ENST00000504328 552 ntTSL 47.71□□□□□ -1.189e-7■■■□□ 16.4
LSM11P83369 MARF1-201ENST00000396368 7743 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.199e-7■■■□□ 16.4
LSM11P83369 MITF-208ENST00000433517 589 ntTSL 37.53□□□□□ -1.29e-7■■■□□ 16.4
LSM11P83369 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC7.38□□□□□ -1.239e-7■■■□□ 16.4
LSM11P83369 CSTF2T-201ENST00000331173 4105 ntAPPRIS P1 BASIC7.38□□□□□ -1.239e-7■■■□□ 16.4
LSM11P83369 MITF-203ENST00000328528 4680 ntTSL 5 BASIC7.15□□□□□ -1.269e-7■■■□□ 16.4
LSM11P83369 MITF-214ENST00000472437 1995 ntAPPRIS ALT1 TSL 2 BASIC7.13□□□□□ -1.279e-7■■■□□ 16.4
LSM11P83369 NUP98-202ENST00000355260 5628 ntTSL 5 BASIC7.07□□□□□ -1.284e-18■■■□□ 16.4
LSM11P83369 FER-202ENST00000438717 1531 ntTSL 2 BASIC6.91□□□□□ -1.39e-7■■■□□ 16.4
LSM11P83369 COPS7B-218ENST00000466901 598 ntTSL 36.84□□□□□ -1.319e-7■■■□□ 16.4
Retrieved 100 of 11,495 protein–RNA pairs in 85.7 ms