RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 NISCHQ9Y2I1 1504 aa33.28■■■□□ 2.92
VPS29-211ENST00000553128 ABCC9O60706 1549 aa30.68■■■□□ 2.5
VPS29-211ENST00000553128 CCDC180Q9P1Z9 1646 aa30.01■■■□□ 2.39
VPS29-211ENST00000553128 DNAJC5BQ9UF47 199 aa29.35■■■□□ 2.29
VPS29-211ENST00000553128 RB1CC1Q8TDY2 1594 aa28.85■■■□□ 2.21
VPS29-211ENST00000553128 PABPN1Q86U42 306 aaKnown RBP eCLIP28.52■■■□□ 2.16
VPS29-211ENST00000553128 NACADO15069 1562 aa28.52■■■□□ 2.16
VPS29-211ENST00000553128 DCAF8L2P0C7V8 631 aa28.37■■■□□ 2.13
VPS29-211ENST00000553128 UNC13AQ9UPW8 1703 aa28.24■■■□□ 2.11
VPS29-211ENST00000553128 BICRAQ9NZM4 1560 aa28.13■■■□□ 2.09
VPS29-211ENST00000553128 MYO15BQ96JP2 1530 aa27.92■■■□□ 2.06
VPS29-211ENST00000553128 CECR2Q9BXF3 1484 aa27.65■■■□□ 2.02
VPS29-211ENST00000553128 CC2D2AQ9P2K1 1620 aa27.65■■■□□ 2.02
VPS29-211ENST00000553128 SHROOM4Q9ULL8 1493 aa27.54■■■□□ 2
VPS29-211ENST00000553128 ZCCHC6Q5VYS8 1495 aaKnown RBP27.47■■□□□ 1.99
VPS29-211ENST00000553128 EIF4G1Q04637 1599 aaKnown RBP27.45■■□□□ 1.99
VPS29-211ENST00000553128 SCRIBQ14160 1630 aa27.42■■□□□ 1.98
VPS29-211ENST00000553128 DCAF1Q9Y4B6 1507 aa27.39■■□□□ 1.98
VPS29-211ENST00000553128 DNAJC5Q9H3Z4 198 aa27.23■■□□□ 1.95
VPS29-211ENST00000553128 CUX2O14529 1486 aa26.57■■□□□ 1.84
VPS29-211ENST00000553128 ERCC6Q03468 1493 aa26.46■■□□□ 1.83
VPS29-211ENST00000553128 NCAPD3P42695 1498 aa26.38■■□□□ 1.81
VPS29-211ENST00000553128 ATAD2BQ9ULI0 1458 aa26.25■■□□□ 1.79
VPS29-211ENST00000553128 NESP48681 1621 aa26.23■■□□□ 1.79
VPS29-211ENST00000553128 HMGXB3Q12766 1538 aa26.11■■□□□ 1.77
VPS29-211ENST00000553128 SMARCA2P51531 1590 aa26.07■■□□□ 1.76
VPS29-211ENST00000553128 SMARCA4P51532 1647 aa26.07■■□□□ 1.76
VPS29-211ENST00000553128 THOC2Q8NI27 1593 aaKnown RBP26.01■■□□□ 1.75
VPS29-211ENST00000553128 BAZ1BQ9UIG0 1483 aaKnown RBP25.94■■□□□ 1.74
VPS29-211ENST00000553128 TRIM41Q8WV44 630 aa25.86■■□□□ 1.73
VPS29-211ENST00000553128 LAMC3Q9Y6N6 1575 aa25.83■■□□□ 1.73
VPS29-211ENST00000553128 BAZ1AQ9NRL2 1556 aaPredicted RBP25.82■■□□□ 1.72
VPS29-211ENST00000553128 KIF21AQ7Z4S6 1674 aa25.8■■□□□ 1.72
VPS29-211ENST00000553128 PEG3Q9GZU2 1588 aa25.79■■□□□ 1.72
VPS29-211ENST00000553128 PDS5BQ9NTI5 1447 aa25.71■■□□□ 1.71
VPS29-211ENST00000553128 MROH2BQ7Z745 1585 aa25.69■■□□□ 1.7
VPS29-211ENST00000553128 CADPSQ9ULU8 1353 aa25.56■■□□□ 1.68
VPS29-211ENST00000553128 MRC2Q9UBG0 1479 aa25.55■■□□□ 1.68
VPS29-211ENST00000553128 WDR62O43379 1518 aa25.51■■□□□ 1.67
VPS29-211ENST00000553128 WIZO95785 1651 aa25.34■■□□□ 1.65
VPS29-211ENST00000553128 CEP164Q9UPV0 1460 aa25.34■■□□□ 1.65
VPS29-211ENST00000553128 OSCARQ8IYS5 282 aa25.29■■□□□ 1.64
VPS29-211ENST00000553128 FANCD2Q9BXW9 1451 aa25.28■■□□□ 1.64
VPS29-211ENST00000553128 CFTRP13569 1480 aa25.16■■□□□ 1.62
VPS29-211ENST00000553128 URB2Q14146 1524 aaKnown RBP25.15■■□□□ 1.62
VPS29-211ENST00000553128 RIMBP3CA6NJZ7 1639 aa25.05■■□□□ 1.6
VPS29-211ENST00000553128 RIMBP3BA6NNM3 1639 aa25.05■■□□□ 1.6
VPS29-211ENST00000553128 RIMBP3Q9UFD9 1639 aa25.05■■□□□ 1.6
VPS29-211ENST00000553128 ZNF608Q9ULD9 1512 aaPredicted RBP24.95■■□□□ 1.58
VPS29-211ENST00000553128 RSF1Q96T23 1441 aaPredicted RBP24.95■■□□□ 1.58
VPS29-211ENST00000553128 TOP2AP11388 1531 aaKnown RBP24.93■■□□□ 1.58
VPS29-211ENST00000553128 ARHGEF11O15085 1522 aa24.91■■□□□ 1.58
VPS29-211ENST00000553128 IFT140Q96RY7 1462 aa24.83■■□□□ 1.57
VPS29-211ENST00000553128 CYB5RLQ6IPT4 315 aa24.79■■□□□ 1.56
VPS29-211ENST00000553128 PRDM2Q13029 1718 aa24.78■■□□□ 1.56
VPS29-211ENST00000553128 TOPBP1Q92547 1522 aa24.75■■□□□ 1.55
VPS29-211ENST00000553128 EIF4G3O43432 1585 aaKnown RBP24.72■■□□□ 1.55
VPS29-211ENST00000553128 CCDC88BA6NC98 1476 aa24.7■■□□□ 1.55
VPS29-211ENST00000553128 ARAP1Q96P48 1450 aa24.67■■□□□ 1.54
VPS29-211ENST00000553128 TRHP20396 242 aaPredicted RBP24.67■■□□□ 1.54
VPS29-211ENST00000553128 AQRO60306 1485 aaKnown RBP eCLIP24.64■■□□□ 1.542e-9■■■■■ 38.2
VPS29-211ENST00000553128 CHD1O14646 1710 aa24.63■■□□□ 1.53
VPS29-211ENST00000553128 DNMBPQ6XZF7 1577 aa24.58■■□□□ 1.52
VPS29-211ENST00000553128 TARBP1Q13395 1621 aaKnown RBP24.57■■□□□ 1.52
VPS29-211ENST00000553128 FBLN2P98095 1184 aa24.56■■□□□ 1.52
VPS29-211ENST00000553128 ABCC8Q09428 1581 aa24.55■■□□□ 1.52
VPS29-211ENST00000553128 POLA1P09884 1462 aaPredicted RBP24.47■■□□□ 1.51
VPS29-211ENST00000553128 RAD54L2Q9Y4B4 1467 aa24.44■■□□□ 1.5
VPS29-211ENST00000553128 TDRD9Q8NDG6 1382 aaKnown RBP24.41■■□□□ 1.5
VPS29-211ENST00000553128 SNAPC4Q5SXM2 1469 aa24.35■■□□□ 1.49
VPS29-211ENST00000553128 CLASP1Q7Z460 1538 aa24.35■■□□□ 1.49
VPS29-211ENST00000553128 SOGA1O94964 1423 aa24.34■■□□□ 1.49
VPS29-211ENST00000553128 AEBP2Q6ZN18 517 aaPredicted RBP24.3■■□□□ 1.48
VPS29-211ENST00000553128 CHMP7Q8WUX9 453 aaPredicted RBP24.26■■□□□ 1.47
VPS29-211ENST00000553128 FGD5Q6ZNL6 1462 aa24.24■■□□□ 1.47
VPS29-211ENST00000553128 SYNJ1O43426 1573 aa24.23■■□□□ 1.47
VPS29-211ENST00000553128 MAGI1Q96QZ7 1491 aaPredicted RBP24.19■■□□□ 1.46
VPS29-211ENST00000553128 WDR97A6NE52 1622 aa24.17■■□□□ 1.46
VPS29-211ENST00000553128 GRIN2BQ13224 1484 aa24.16■■□□□ 1.46
VPS29-211ENST00000553128 CUX1P39880 1505 aa24.15■■□□□ 1.46
VPS29-211ENST00000553128 SYNJ2O15056 1496 aa24.14■■□□□ 1.46
VPS29-211ENST00000553128 GAPVD1Q14C86 1478 aa24.13■■□□□ 1.45
VPS29-211ENST00000553128 PBRM1Q86U86 1689 aa24.02■■□□□ 1.44
VPS29-211ENST00000553128 ERCC6L2Q5T890 1561 aa24.01■■□□□ 1.43
VPS29-211ENST00000553128 ABCA5Q8WWZ7 1642 aa23.92■■□□□ 1.42
VPS29-211ENST00000553128 ABCA10Q8WWZ4 1543 aa23.9■■□□□ 1.42
VPS29-211ENST00000553128 GRIN2AQ12879 1464 aa23.87■■□□□ 1.41
VPS29-211ENST00000553128 CEP170Q5SW79 1584 aa23.85■■□□□ 1.41
VPS29-211ENST00000553128 NUP160Q12769 1436 aa23.82■■□□□ 1.4
VPS29-211ENST00000553128 ADAMTS12P58397 1594 aa23.78■■□□□ 1.4
VPS29-211ENST00000553128 SHROOM2Q13796 1616 aa23.75■■□□□ 1.39
VPS29-211ENST00000553128 KIF13AQ9H1H9 1805 aa23.74■■□□□ 1.39
VPS29-211ENST00000553128 WRNQ14191 1432 aaPredicted RBP eCLIP23.68■■□□□ 1.38
VPS29-211ENST00000553128 FHAD1B1AJZ9 1412 aa23.67■■□□□ 1.38
VPS29-211ENST00000553128 PRG4Q92954 1404 aaPredicted RBP23.64■■□□□ 1.37
VPS29-211ENST00000553128 FAM69CQ0P6D2 419 aa23.58■■□□□ 1.37
VPS29-211ENST00000553128 JPH4Q96JJ6 628 aa23.57■■□□□ 1.36
VPS29-211ENST00000553128 TOP2BQ02880 1626 aa23.57■■□□□ 1.36
VPS29-211ENST00000553128 ERICH3Q5RHP9 1530 aa23.57■■□□□ 1.36
VPS29-211ENST00000553128 BIVM-ERCC5R4GMW8 1640 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms