RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 AEBP2Q6ZN18 517 aaPredicted RBP32.31■■■□□ 2.76
VPS29-212ENST00000621131 CHIC1Q5VXU3 224 aa31.15■■■□□ 2.58
VPS29-212ENST00000621131 SENP3Q9H4L4 574 aaPredicted RBP27.42■■□□□ 1.98
VPS29-212ENST00000621131 PHF23Q9BUL5 403 aaPredicted RBP27.39■■□□□ 1.98
VPS29-212ENST00000621131 FOXD1Q16676 465 aa25.54■■□□□ 1.68
VPS29-212ENST00000621131 PLPPR3Q6T4P5 718 aa25.08■■□□□ 1.61
VPS29-212ENST00000621131 PPP6R1Q9UPN7 881 aa24.31■■□□□ 1.48
VPS29-212ENST00000621131 ADRA2BP18089 450 aa24.23■■□□□ 1.47
VPS29-212ENST00000621131 PIAS4Q8N2W9 510 aaPredicted RBP23.94■■□□□ 1.42
VPS29-212ENST00000621131 MSH5O43196 834 aa23.66■■□□□ 1.38
VPS29-212ENST00000621131 POTEDQ86YR6 584 aa22.56■■□□□ 1.2
VPS29-212ENST00000621131 MAPK8IP2Q13387 824 aaPredicted RBP22.12■■□□□ 1.13
VPS29-212ENST00000621131 SCAF1Q9H7N4 1312 aaKnown RBP22.11■■□□□ 1.13
VPS29-212ENST00000621131 PPP4R3CPQ6ZMV5 832 aa22.08■■□□□ 1.13
VPS29-212ENST00000621131 DMRT2Q9Y5R5 561 aa21.86■■□□□ 1.09
VPS29-212ENST00000621131 CNKSR2Q8WXI2 1034 aa21.54■■□□□ 1.04
VPS29-212ENST00000621131 NCBP3Q53F19 620 aaKnown RBP21.34■■□□□ 1.01
VPS29-212ENST00000621131 HOXD11P31277 338 aaPredicted RBP21.26■□□□□ 0.99
VPS29-212ENST00000621131 RNF216Q9NWF9 866 aaPredicted RBP21.21■□□□□ 0.99
VPS29-212ENST00000621131 KCNA4P22459 653 aa21.11■□□□□ 0.97
VPS29-212ENST00000621131 NPM3O75607 178 aaKnown RBP21.08■□□□□ 0.97
VPS29-212ENST00000621131 DCAF8L1A6NGE4 600 aa20.86■□□□□ 0.93
VPS29-212ENST00000621131 DNAJC5BQ9UF47 199 aa20.56■□□□□ 0.88
VPS29-212ENST00000621131 RNF39Q9H2S5 420 aa20.27■□□□□ 0.84
VPS29-212ENST00000621131 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.2■□□□□ 0.82
VPS29-212ENST00000621131 SLC4A2P04920 1241 aa20.02■□□□□ 0.8
VPS29-212ENST00000621131 CACNB1Q02641 598 aaPredicted RBP20■□□□□ 0.79
VPS29-212ENST00000621131 SLC4A1APQ9BWU0 796 aaKnown RBP20■□□□□ 0.79
VPS29-212ENST00000621131 C1QBPQ07021 282 aaKnown RBP19.99■□□□□ 0.79
VPS29-212ENST00000621131 U3KPZ7 1027 aaPredicted RBP19.87■□□□□ 0.77
VPS29-212ENST00000621131 FOXD4L1Q9NU39 408 aa19.52■□□□□ 0.72
VPS29-212ENST00000621131 MYCNP04198 464 aaPredicted RBP19.45■□□□□ 0.7
VPS29-212ENST00000621131 ZBTB22O15209 634 aa19.44■□□□□ 0.7
VPS29-212ENST00000621131 SPINK5Q9NQ38 1064 aaPredicted RBP19.44■□□□□ 0.7
VPS29-212ENST00000621131 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.43■□□□□ 0.7
VPS29-212ENST00000621131 HNRNPUL2Q1KMD3 747 aaKnown RBP19.43■□□□□ 0.7
VPS29-212ENST00000621131 SAMD1Q6SPF0 538 aaPredicted RBP19.36■□□□□ 0.69
VPS29-212ENST00000621131 CAPN15O75808 1086 aa19.33■□□□□ 0.68
VPS29-212ENST00000621131 APLP2Q06481 763 aa19.3■□□□□ 0.68
VPS29-212ENST00000621131 DSG3P32926 999 aa19.16■□□□□ 0.66
VPS29-212ENST00000621131 TRHP20396 242 aaPredicted RBP19.15■□□□□ 0.66
VPS29-212ENST00000621131 ZNF219Q9P2Y4 722 aaPredicted RBP19.12■□□□□ 0.65
VPS29-212ENST00000621131 ATF5Q9Y2D1 282 aaPredicted RBP19.02■□□□□ 0.64
VPS29-212ENST00000621131 CSRNP3Q8WYN3 585 aa19■□□□□ 0.63
VPS29-212ENST00000621131 ABCB7O75027 752 aa18.94■□□□□ 0.62
VPS29-212ENST00000621131 EHMT2Q96KQ7 1210 aa18.94■□□□□ 0.62
VPS29-212ENST00000621131 ATXN8OSP0DMR3 200 aa18.9■□□□□ 0.62
VPS29-212ENST00000621131 POLA2Q14181 598 aa18.78■□□□□ 0.6
VPS29-212ENST00000621131 ZBTB12Q9Y330 459 aaPredicted RBP18.39■□□□□ 0.53
VPS29-212ENST00000621131 RBM42Q9BTD8 480 aaKnown RBP18.21■□□□□ 0.51
VPS29-212ENST00000621131 FBLN2P98095 1184 aa18.16■□□□□ 0.5
VPS29-212ENST00000621131 MKRN4PQ13434 485 aaPredicted RBP18.16■□□□□ 0.5
VPS29-212ENST00000621131 OSCARQ8IYS5 282 aa18.13■□□□□ 0.49
VPS29-212ENST00000621131 AKT1S1Q96B36 256 aa17.94■□□□□ 0.46
VPS29-212ENST00000621131 SPDYE2BA6NHP3 402 aa17.9■□□□□ 0.46
VPS29-212ENST00000621131 SPDYE6P0CI01 402 aa17.9■□□□□ 0.46
VPS29-212ENST00000621131 SPDYE2Q495Y8 402 aa17.9■□□□□ 0.46
VPS29-212ENST00000621131 REM2Q8IYK8 340 aaPredicted RBP17.78■□□□□ 0.44
VPS29-212ENST00000621131 ZNF692Q9BU19 519 aaPredicted RBP17.77■□□□□ 0.44
VPS29-212ENST00000621131 SSUH2Q9Y2M2 353 aa17.74■□□□□ 0.43
VPS29-212ENST00000621131 CHRDL2Q6WN34 429 aa17.63■□□□□ 0.41
VPS29-212ENST00000621131 PITPNM1O00562 1244 aa17.56■□□□□ 0.4
VPS29-212ENST00000621131 POTEHQ6S545 545 aa17.54■□□□□ 0.4
VPS29-212ENST00000621131 PABPN1Q86U42 306 aaKnown RBP eCLIP17.52■□□□□ 0.4
VPS29-212ENST00000621131 SPDYE4A6NLX3 237 aa17.51■□□□□ 0.39
VPS29-212ENST00000621131 SPDYE1Q8NFV5 336 aaPredicted RBP17.45■□□□□ 0.38
VPS29-212ENST00000621131 CLEC11AQ9Y240 323 aa17.38■□□□□ 0.37
VPS29-212ENST00000621131 FXR2P51116 673 aaKnown RBP eCLIP17.35■□□□□ 0.37
VPS29-212ENST00000621131 PIP4P2Q8N4L2 257 aa17.34■□□□□ 0.37
VPS29-212ENST00000621131 PROM2Q8N271 834 aa17.22■□□□□ 0.35
VPS29-212ENST00000621131 PRR29P0C7W0 189 aa17.19■□□□□ 0.34
VPS29-212ENST00000621131 FKBP8Q14318 412 aa17.14■□□□□ 0.33
VPS29-212ENST00000621131 STAG3Q9UJ98 1225 aa17.14■□□□□ 0.33
VPS29-212ENST00000621131 PRKAR2AP13861 404 aaKnown RBP17.11■□□□□ 0.33
VPS29-212ENST00000621131 CHADLQ6NUI6 762 aa17.03■□□□□ 0.32
VPS29-212ENST00000621131 CREBZFQ9NS37 354 aa16.92■□□□□ 0.3
VPS29-212ENST00000621131 HAX1O00165 279 aa16.87■□□□□ 0.29
VPS29-212ENST00000621131 FARP1Q9Y4F1 1045 aaPredicted RBP16.84■□□□□ 0.29
VPS29-212ENST00000621131 C19orf67A6NJJ6 358 aa16.77■□□□□ 0.28
VPS29-212ENST00000621131 EVX2Q03828 476 aa16.77■□□□□ 0.28
VPS29-212ENST00000621131 MNX1P50219 401 aaPredicted RBP16.72■□□□□ 0.27
VPS29-212ENST00000621131 SP7Q8TDD2 431 aaPredicted RBP16.68■□□□□ 0.26
VPS29-212ENST00000621131 MIER1Q8N108 512 aa16.66■□□□□ 0.26
VPS29-212ENST00000621131 FBXO3Q9UK99 471 aa16.64■□□□□ 0.25
VPS29-212ENST00000621131 NPM1P06748 294 aaKnown RBP eCLIP16.58■□□□□ 0.24
VPS29-212ENST00000621131 CD44P16070 742 aaKnown RBP16.58■□□□□ 0.24
VPS29-212ENST00000621131 PLCD3Q8N3E9 789 aa16.55■□□□□ 0.24
VPS29-212ENST00000621131 PLEKHG5O94827 1062 aa16.54■□□□□ 0.24
VPS29-212ENST00000621131 ZRANB1Q9UGI0 708 aa16.44■□□□□ 0.22
VPS29-212ENST00000621131 VASPP50552 380 aaPredicted RBP16.43■□□□□ 0.22
VPS29-212ENST00000621131 GABBR2O75899 941 aa16.39■□□□□ 0.21
VPS29-212ENST00000621131 ZBTB47Q9UFB7 747 aaPredicted RBP16.39■□□□□ 0.21
VPS29-212ENST00000621131 ZNF579Q8NAF0 562 aaKnown RBP16.37■□□□□ 0.21
VPS29-212ENST00000621131 PAK3O75914 559 aaPredicted RBP16.36■□□□□ 0.21
VPS29-212ENST00000621131 NUBP1P53384 320 aa16.31■□□□□ 0.2
VPS29-212ENST00000621131 RASEFQ8IZ41 740 aa16.31■□□□□ 0.2
VPS29-212ENST00000621131 TSPYL2Q9H2G4 693 aaPredicted RBP16.3■□□□□ 0.2
VPS29-212ENST00000621131 CLCN6P51797 869 aa16.29■□□□□ 0.2
VPS29-212ENST00000621131 PHF12Q96QT6 1004 aa16.25■□□□□ 0.19
VPS29-212ENST00000621131 CCDC61Q9Y6R9 512 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms