RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 NISCHQ9Y2I1 1504 aa35.11■■■■□ 3.21
VPS29-201ENST00000360579 ABCC9O60706 1549 aa31.95■■■□□ 2.7
VPS29-201ENST00000360579 CCDC180Q9P1Z9 1646 aa31.65■■■□□ 2.66
VPS29-201ENST00000360579 AEBP2Q6ZN18 517 aaPredicted RBP30.67■■■□□ 2.5
VPS29-201ENST00000360579 RB1CC1Q8TDY2 1594 aa30.32■■■□□ 2.44
VPS29-201ENST00000360579 DNAJC5BQ9UF47 199 aa30.23■■■□□ 2.43
VPS29-201ENST00000360579 NACADO15069 1562 aa30.03■■■□□ 2.4
VPS29-201ENST00000360579 DCAF8L2P0C7V8 631 aa29.77■■■□□ 2.36
VPS29-201ENST00000360579 PABPN1Q86U42 306 aaKnown RBP eCLIP29.69■■■□□ 2.34
VPS29-201ENST00000360579 MYO15BQ96JP2 1530 aa29.55■■■□□ 2.32
VPS29-201ENST00000360579 UNC13AQ9UPW8 1703 aa29.48■■■□□ 2.31
VPS29-201ENST00000360579 CHIC1Q5VXU3 224 aa29.38■■■□□ 2.29
VPS29-201ENST00000360579 BICRAQ9NZM4 1560 aa29.37■■■□□ 2.29
VPS29-201ENST00000360579 SHROOM4Q9ULL8 1493 aa29.09■■■□□ 2.25
VPS29-201ENST00000360579 DCAF1Q9Y4B6 1507 aa29.03■■■□□ 2.24
VPS29-201ENST00000360579 ZCCHC6Q5VYS8 1495 aaKnown RBP29.03■■■□□ 2.24
VPS29-201ENST00000360579 CECR2Q9BXF3 1484 aa28.85■■■□□ 2.21
VPS29-201ENST00000360579 CC2D2AQ9P2K1 1620 aa28.83■■■□□ 2.21
VPS29-201ENST00000360579 SCRIBQ14160 1630 aa28.77■■■□□ 2.2
VPS29-201ENST00000360579 EIF4G1Q04637 1599 aaKnown RBP28.72■■■□□ 2.19
VPS29-201ENST00000360579 DNAJC5Q9H3Z4 198 aa28.09■■■□□ 2.09
VPS29-201ENST00000360579 CUX2O14529 1486 aa27.75■■■□□ 2.03
VPS29-201ENST00000360579 NCAPD3P42695 1498 aa27.74■■■□□ 2.03
VPS29-201ENST00000360579 ERCC6Q03468 1493 aa27.67■■■□□ 2.02
VPS29-201ENST00000360579 ATAD2BQ9ULI0 1458 aa27.57■■■□□ 2
VPS29-201ENST00000360579 SMARCA2P51531 1590 aa27.52■■■□□ 2
VPS29-201ENST00000360579 HMGXB3Q12766 1538 aa27.49■■□□□ 1.99
VPS29-201ENST00000360579 SMARCA4P51532 1647 aa27.44■■□□□ 1.98
VPS29-201ENST00000360579 NESP48681 1621 aa27.32■■□□□ 1.96
VPS29-201ENST00000360579 BAZ1BQ9UIG0 1483 aaKnown RBP27.31■■□□□ 1.96
VPS29-201ENST00000360579 BAZ1AQ9NRL2 1556 aaPredicted RBP27.31■■□□□ 1.96
VPS29-201ENST00000360579 PEG3Q9GZU2 1588 aa27.21■■□□□ 1.95
VPS29-201ENST00000360579 LAMC3Q9Y6N6 1575 aa27.15■■□□□ 1.94
VPS29-201ENST00000360579 THOC2Q8NI27 1593 aaKnown RBP27.13■■□□□ 1.93
VPS29-201ENST00000360579 PDS5BQ9NTI5 1447 aa27.05■■□□□ 1.92
VPS29-201ENST00000360579 MROH2BQ7Z745 1585 aa27.01■■□□□ 1.91
VPS29-201ENST00000360579 KIF21AQ7Z4S6 1674 aa26.93■■□□□ 1.9
VPS29-201ENST00000360579 CADPSQ9ULU8 1353 aa26.88■■□□□ 1.89
VPS29-201ENST00000360579 MRC2Q9UBG0 1479 aa26.8■■□□□ 1.88
VPS29-201ENST00000360579 WDR62O43379 1518 aa26.73■■□□□ 1.87
VPS29-201ENST00000360579 TRIM41Q8WV44 630 aa26.68■■□□□ 1.86
VPS29-201ENST00000360579 WIZO95785 1651 aa26.63■■□□□ 1.85
VPS29-201ENST00000360579 CEP164Q9UPV0 1460 aa26.62■■□□□ 1.85
VPS29-201ENST00000360579 FANCD2Q9BXW9 1451 aa26.55■■□□□ 1.84
VPS29-201ENST00000360579 CFTRP13569 1480 aa26.49■■□□□ 1.83
VPS29-201ENST00000360579 OSCARQ8IYS5 282 aa26.43■■□□□ 1.82
VPS29-201ENST00000360579 RSF1Q96T23 1441 aaPredicted RBP26.36■■□□□ 1.81
VPS29-201ENST00000360579 TOP2AP11388 1531 aaKnown RBP26.35■■□□□ 1.81
VPS29-201ENST00000360579 URB2Q14146 1524 aaKnown RBP26.32■■□□□ 1.8
VPS29-201ENST00000360579 IFT140Q96RY7 1462 aa26.12■■□□□ 1.77
VPS29-201ENST00000360579 PRDM2Q13029 1718 aa26.11■■□□□ 1.77
VPS29-201ENST00000360579 SENP3Q9H4L4 574 aaPredicted RBP26.1■■□□□ 1.77
VPS29-201ENST00000360579 CCDC88BA6NC98 1476 aa26.04■■□□□ 1.76
VPS29-201ENST00000360579 ZNF608Q9ULD9 1512 aaPredicted RBP26.04■■□□□ 1.76
VPS29-201ENST00000360579 RIMBP3CA6NJZ7 1639 aa26.03■■□□□ 1.76
VPS29-201ENST00000360579 RIMBP3BA6NNM3 1639 aa26.03■■□□□ 1.76
VPS29-201ENST00000360579 RIMBP3Q9UFD9 1639 aa26.03■■□□□ 1.76
VPS29-201ENST00000360579 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
VPS29-201ENST00000360579 TOPBP1Q92547 1522 aa25.99■■□□□ 1.75
VPS29-201ENST00000360579 ARHGEF11O15085 1522 aa25.95■■□□□ 1.74
VPS29-201ENST00000360579 EIF4G3O43432 1585 aaKnown RBP25.89■■□□□ 1.73
VPS29-201ENST00000360579 DNMBPQ6XZF7 1577 aa25.88■■□□□ 1.73
VPS29-201ENST00000360579 CYB5RLQ6IPT4 315 aa25.8■■□□□ 1.72
VPS29-201ENST00000360579 PHF23Q9BUL5 403 aaPredicted RBP25.79■■□□□ 1.72
VPS29-201ENST00000360579 AQRO60306 1485 aaKnown RBP eCLIP25.79■■□□□ 1.722e-9■■■■■ 38.2
VPS29-201ENST00000360579 TARBP1Q13395 1621 aaKnown RBP25.77■■□□□ 1.72
VPS29-201ENST00000360579 POLA1P09884 1462 aaPredicted RBP25.72■■□□□ 1.71
VPS29-201ENST00000360579 FBLN2P98095 1184 aa25.71■■□□□ 1.71
VPS29-201ENST00000360579 CHD1O14646 1710 aa25.71■■□□□ 1.71
VPS29-201ENST00000360579 ARAP1Q96P48 1450 aa25.66■■□□□ 1.7
VPS29-201ENST00000360579 TRHP20396 242 aaPredicted RBP25.64■■□□□ 1.7
VPS29-201ENST00000360579 SOGA1O94964 1423 aa25.62■■□□□ 1.69
VPS29-201ENST00000360579 RAD54L2Q9Y4B4 1467 aa25.6■■□□□ 1.69
VPS29-201ENST00000360579 TDRD9Q8NDG6 1382 aaKnown RBP25.58■■□□□ 1.69
VPS29-201ENST00000360579 WDR97A6NE52 1622 aa25.56■■□□□ 1.68
VPS29-201ENST00000360579 SNAPC4Q5SXM2 1469 aa25.52■■□□□ 1.68
VPS29-201ENST00000360579 FGD5Q6ZNL6 1462 aa25.5■■□□□ 1.67
VPS29-201ENST00000360579 CHMP7Q8WUX9 453 aaPredicted RBP25.5■■□□□ 1.67
VPS29-201ENST00000360579 MAGI1Q96QZ7 1491 aaPredicted RBP25.48■■□□□ 1.67
VPS29-201ENST00000360579 SYNJ1O43426 1573 aa25.47■■□□□ 1.67
VPS29-201ENST00000360579 CLASP1Q7Z460 1538 aa25.47■■□□□ 1.67
VPS29-201ENST00000360579 GRIN2BQ13224 1484 aa25.45■■□□□ 1.66
VPS29-201ENST00000360579 CUX1P39880 1505 aa25.4■■□□□ 1.66
VPS29-201ENST00000360579 SYNJ2O15056 1496 aa25.4■■□□□ 1.66
VPS29-201ENST00000360579 GAPVD1Q14C86 1478 aa25.29■■□□□ 1.64
VPS29-201ENST00000360579 PBRM1Q86U86 1689 aa25.23■■□□□ 1.63
VPS29-201ENST00000360579 ABCA10Q8WWZ4 1543 aa25.22■■□□□ 1.63
VPS29-201ENST00000360579 ABCA5Q8WWZ7 1642 aa25.17■■□□□ 1.62
VPS29-201ENST00000360579 GRIN2AQ12879 1464 aa25.09■■□□□ 1.61
VPS29-201ENST00000360579 WRNQ14191 1432 aaPredicted RBP eCLIP25.08■■□□□ 1.61
VPS29-201ENST00000360579 NUP160Q12769 1436 aa25.03■■□□□ 1.6
VPS29-201ENST00000360579 ADAMTS12P58397 1594 aa25.01■■□□□ 1.59
VPS29-201ENST00000360579 ERCC6L2Q5T890 1561 aa24.99■■□□□ 1.59
VPS29-201ENST00000360579 CEP170Q5SW79 1584 aa24.98■■□□□ 1.59
VPS29-201ENST00000360579 FHAD1B1AJZ9 1412 aa24.98■■□□□ 1.59
VPS29-201ENST00000360579 SUPT5HO00267 1087 aaKnown RBP24.93■■□□□ 1.58
VPS29-201ENST00000360579 TOP2BQ02880 1626 aa24.93■■□□□ 1.58
VPS29-201ENST00000360579 SHROOM2Q13796 1616 aa24.92■■□□□ 1.58
VPS29-201ENST00000360579 BIVM-ERCC5R4GMW8 1640 aa24.91■■□□□ 1.58
VPS29-201ENST00000360579 ERICH3Q5RHP9 1530 aa24.91■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms