RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NISCHQ9Y2I1 1504 aa42.68■■■■■ 4.42
VPS29-204ENST00000548259 ABCC9O60706 1549 aa38.89■■■■□ 3.82
VPS29-204ENST00000548259 CCDC180Q9P1Z9 1646 aa38.44■■■■□ 3.74
VPS29-204ENST00000548259 RB1CC1Q8TDY2 1594 aa36.87■■■■□ 3.49
VPS29-204ENST00000548259 DNAJC5BQ9UF47 199 aa36.78■■■■□ 3.48
VPS29-204ENST00000548259 NACADO15069 1562 aa36.53■■■■□ 3.44
VPS29-204ENST00000548259 DCAF8L2P0C7V8 631 aa36.36■■■■□ 3.41
VPS29-204ENST00000548259 PABPN1Q86U42 306 aaKnown RBP eCLIP36.18■■■■□ 3.38
VPS29-204ENST00000548259 MYO15BQ96JP2 1530 aa35.9■■■■□ 3.34
VPS29-204ENST00000548259 UNC13AQ9UPW8 1703 aa35.76■■■■□ 3.31
VPS29-204ENST00000548259 BICRAQ9NZM4 1560 aa35.66■■■■□ 3.3
VPS29-204ENST00000548259 SHROOM4Q9ULL8 1493 aa35.35■■■■□ 3.25
VPS29-204ENST00000548259 ZCCHC6Q5VYS8 1495 aaKnown RBP35.27■■■■□ 3.24
VPS29-204ENST00000548259 DCAF1Q9Y4B6 1507 aa35.27■■■■□ 3.24
VPS29-204ENST00000548259 CECR2Q9BXF3 1484 aa35.12■■■■□ 3.21
VPS29-204ENST00000548259 CC2D2AQ9P2K1 1620 aa35.06■■■■□ 3.2
VPS29-204ENST00000548259 SCRIBQ14160 1630 aa34.99■■■■□ 3.19
VPS29-204ENST00000548259 EIF4G1Q04637 1599 aaKnown RBP34.91■■■■□ 3.18
VPS29-204ENST00000548259 DNAJC5Q9H3Z4 198 aa34.23■■■■□ 3.07
VPS29-204ENST00000548259 CUX2O14529 1486 aa33.76■■■■□ 3
VPS29-204ENST00000548259 NCAPD3P42695 1498 aa33.73■■■□□ 2.99
VPS29-204ENST00000548259 ERCC6Q03468 1493 aa33.72■■■□□ 2.99
VPS29-204ENST00000548259 ATAD2BQ9ULI0 1458 aa33.53■■■□□ 2.96
VPS29-204ENST00000548259 SMARCA2P51531 1590 aa33.47■■■□□ 2.95
VPS29-204ENST00000548259 HMGXB3Q12766 1538 aa33.41■■■□□ 2.94
VPS29-204ENST00000548259 SMARCA4P51532 1647 aa33.34■■■□□ 2.93
VPS29-204ENST00000548259 BAZ1BQ9UIG0 1483 aaKnown RBP33.24■■■□□ 2.91
VPS29-204ENST00000548259 NESP48681 1621 aa33.22■■■□□ 2.91
VPS29-204ENST00000548259 BAZ1AQ9NRL2 1556 aaPredicted RBP33.2■■■□□ 2.91
VPS29-204ENST00000548259 PEG3Q9GZU2 1588 aa33.04■■■□□ 2.88
VPS29-204ENST00000548259 LAMC3Q9Y6N6 1575 aa33.02■■■□□ 2.88
VPS29-204ENST00000548259 THOC2Q8NI27 1593 aaKnown RBP32.95■■■□□ 2.86
VPS29-204ENST00000548259 PDS5BQ9NTI5 1447 aa32.94■■■□□ 2.86
VPS29-204ENST00000548259 MROH2BQ7Z745 1585 aa32.83■■■□□ 2.85
VPS29-204ENST00000548259 KIF21AQ7Z4S6 1674 aa32.72■■■□□ 2.83
VPS29-204ENST00000548259 CADPSQ9ULU8 1353 aa32.71■■■□□ 2.83
VPS29-204ENST00000548259 MRC2Q9UBG0 1479 aa32.61■■■□□ 2.81
VPS29-204ENST00000548259 TRIM41Q8WV44 630 aa32.58■■■□□ 2.81
VPS29-204ENST00000548259 WDR62O43379 1518 aa32.48■■■□□ 2.79
VPS29-204ENST00000548259 CEP164Q9UPV0 1460 aa32.41■■■□□ 2.78
VPS29-204ENST00000548259 WIZO95785 1651 aa32.37■■■□□ 2.77
VPS29-204ENST00000548259 FANCD2Q9BXW9 1451 aa32.31■■■□□ 2.76
VPS29-204ENST00000548259 OSCARQ8IYS5 282 aa32.24■■■□□ 2.75
VPS29-204ENST00000548259 CFTRP13569 1480 aa32.22■■■□□ 2.75
VPS29-204ENST00000548259 RSF1Q96T23 1441 aaPredicted RBP32.06■■■□□ 2.72
VPS29-204ENST00000548259 TOP2AP11388 1531 aaKnown RBP32.03■■■□□ 2.72
VPS29-204ENST00000548259 URB2Q14146 1524 aaKnown RBP32■■■□□ 2.71
VPS29-204ENST00000548259 IFT140Q96RY7 1462 aa31.79■■■□□ 2.68
VPS29-204ENST00000548259 PRDM2Q13029 1718 aa31.69■■■□□ 2.66
VPS29-204ENST00000548259 ZNF608Q9ULD9 1512 aaPredicted RBP31.67■■■□□ 2.66
VPS29-204ENST00000548259 CCDC88BA6NC98 1476 aa31.66■■■□□ 2.66
VPS29-204ENST00000548259 ABCC8Q09428 1581 aa31.65■■■□□ 2.66
VPS29-204ENST00000548259 RIMBP3CA6NJZ7 1639 aa31.65■■■□□ 2.66
VPS29-204ENST00000548259 RIMBP3BA6NNM3 1639 aa31.65■■■□□ 2.66
VPS29-204ENST00000548259 RIMBP3Q9UFD9 1639 aa31.65■■■□□ 2.66
VPS29-204ENST00000548259 TOPBP1Q92547 1522 aa31.62■■■□□ 2.65
VPS29-204ENST00000548259 ARHGEF11O15085 1522 aa31.57■■■□□ 2.64
VPS29-204ENST00000548259 CYB5RLQ6IPT4 315 aa31.47■■■□□ 2.63
VPS29-204ENST00000548259 EIF4G3O43432 1585 aaKnown RBP31.47■■■□□ 2.63
VPS29-204ENST00000548259 DNMBPQ6XZF7 1577 aa31.47■■■□□ 2.63
VPS29-204ENST00000548259 FBLN2P98095 1184 aa31.39■■■□□ 2.62
VPS29-204ENST00000548259 AQRO60306 1485 aaKnown RBP eCLIP31.38■■■□□ 2.612e-9■■■■■ 38.2
VPS29-204ENST00000548259 TRHP20396 242 aaPredicted RBP31.32■■■□□ 2.6
VPS29-204ENST00000548259 TARBP1Q13395 1621 aaKnown RBP31.3■■■□□ 2.6
VPS29-204ENST00000548259 POLA1P09884 1462 aaPredicted RBP31.27■■■□□ 2.6
VPS29-204ENST00000548259 CHD1O14646 1710 aa31.24■■■□□ 2.59
VPS29-204ENST00000548259 ARAP1Q96P48 1450 aa31.21■■■□□ 2.59
VPS29-204ENST00000548259 SOGA1O94964 1423 aa31.2■■■□□ 2.59
VPS29-204ENST00000548259 TDRD9Q8NDG6 1382 aaKnown RBP31.16■■■□□ 2.58
VPS29-204ENST00000548259 RAD54L2Q9Y4B4 1467 aa31.14■■■□□ 2.57
VPS29-204ENST00000548259 CHMP7Q8WUX9 453 aaPredicted RBP31.11■■■□□ 2.57
VPS29-204ENST00000548259 WDR97A6NE52 1622 aa31.07■■■□□ 2.56
VPS29-204ENST00000548259 SNAPC4Q5SXM2 1469 aa31.05■■■□□ 2.56
VPS29-204ENST00000548259 FGD5Q6ZNL6 1462 aa31.01■■■□□ 2.56
VPS29-204ENST00000548259 MAGI1Q96QZ7 1491 aaPredicted RBP31.01■■■□□ 2.56
VPS29-204ENST00000548259 SYNJ1O43426 1573 aa30.99■■■□□ 2.55
VPS29-204ENST00000548259 GRIN2BQ13224 1484 aa30.97■■■□□ 2.55
VPS29-204ENST00000548259 CLASP1Q7Z460 1538 aa30.94■■■□□ 2.54
VPS29-204ENST00000548259 SYNJ2O15056 1496 aa30.9■■■□□ 2.54
VPS29-204ENST00000548259 CUX1P39880 1505 aa30.88■■■□□ 2.53
VPS29-204ENST00000548259 GAPVD1Q14C86 1478 aa30.79■■■□□ 2.52
VPS29-204ENST00000548259 AEBP2Q6ZN18 517 aaPredicted RBP30.78■■■□□ 2.52
VPS29-204ENST00000548259 ABCA10Q8WWZ4 1543 aa30.66■■■□□ 2.5
VPS29-204ENST00000548259 PBRM1Q86U86 1689 aa30.65■■■□□ 2.5
VPS29-204ENST00000548259 ABCA5Q8WWZ7 1642 aa30.57■■■□□ 2.48
VPS29-204ENST00000548259 WRNQ14191 1432 aaPredicted RBP eCLIP30.55■■■□□ 2.48
VPS29-204ENST00000548259 GRIN2AQ12879 1464 aa30.53■■■□□ 2.48
VPS29-204ENST00000548259 NUP160Q12769 1436 aa30.44■■■□□ 2.46
VPS29-204ENST00000548259 SUPT5HO00267 1087 aaKnown RBP30.42■■■□□ 2.46
VPS29-204ENST00000548259 FHAD1B1AJZ9 1412 aa30.41■■■□□ 2.46
VPS29-204ENST00000548259 ADAMTS12P58397 1594 aa30.39■■■□□ 2.46
VPS29-204ENST00000548259 CEP170Q5SW79 1584 aa30.37■■■□□ 2.45
VPS29-204ENST00000548259 ERCC6L2Q5T890 1561 aa30.37■■■□□ 2.45
VPS29-204ENST00000548259 ERICH3Q5RHP9 1530 aa30.29■■■□□ 2.44
VPS29-204ENST00000548259 TOP2BQ02880 1626 aa30.29■■■□□ 2.44
VPS29-204ENST00000548259 SHROOM2Q13796 1616 aa30.26■■■□□ 2.44
VPS29-204ENST00000548259 BIVM-ERCC5R4GMW8 1640 aa30.25■■■□□ 2.43
VPS29-204ENST00000548259 PRG4Q92954 1404 aaPredicted RBP30.22■■■□□ 2.43
VPS29-204ENST00000548259 JPH4Q96JJ6 628 aa30.21■■■□□ 2.43
VPS29-204ENST00000548259 NPM1P06748 294 aaKnown RBP eCLIP30.18■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms