RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 AEBP2Q6ZN18 517 aaPredicted RBP30.03■■■□□ 2.4
VPS29-203ENST00000546588 CHIC1Q5VXU3 224 aa28.34■■■□□ 2.13
VPS29-203ENST00000546588 SENP3Q9H4L4 574 aaPredicted RBP25.57■■□□□ 1.68
VPS29-203ENST00000546588 PHF23Q9BUL5 403 aaPredicted RBP25.23■■□□□ 1.63
VPS29-203ENST00000546588 FOXD1Q16676 465 aa23.88■■□□□ 1.41
VPS29-203ENST00000546588 PLPPR3Q6T4P5 718 aa22.53■■□□□ 1.2
VPS29-203ENST00000546588 MSH5O43196 834 aa22.38■■□□□ 1.17
VPS29-203ENST00000546588 POTEDQ86YR6 584 aa22.37■■□□□ 1.17
VPS29-203ENST00000546588 PPP6R1Q9UPN7 881 aa22.23■■□□□ 1.15
VPS29-203ENST00000546588 PIAS4Q8N2W9 510 aaPredicted RBP22.2■■□□□ 1.14
VPS29-203ENST00000546588 ADRA2BP18089 450 aa22.08■■□□□ 1.13
VPS29-203ENST00000546588 MAPK8IP2Q13387 824 aaPredicted RBP20.35■□□□□ 0.85
VPS29-203ENST00000546588 DMRT2Q9Y5R5 561 aa20.29■□□□□ 0.84
VPS29-203ENST00000546588 SCAF1Q9H7N4 1312 aaKnown RBP20.18■□□□□ 0.82
VPS29-203ENST00000546588 PPP4R3CPQ6ZMV5 832 aa19.72■□□□□ 0.75
VPS29-203ENST00000546588 NISCHQ9Y2I1 1504 aa19.7■□□□□ 0.74
VPS29-203ENST00000546588 HOXD11P31277 338 aaPredicted RBP19.51■□□□□ 0.71
VPS29-203ENST00000546588 CNKSR2Q8WXI2 1034 aa19.4■□□□□ 0.7
VPS29-203ENST00000546588 RNF216Q9NWF9 866 aaPredicted RBP19.29■□□□□ 0.68
VPS29-203ENST00000546588 DCAF8L1A6NGE4 600 aa19.28■□□□□ 0.68
VPS29-203ENST00000546588 CACNB1Q02641 598 aaPredicted RBP19.23■□□□□ 0.67
VPS29-203ENST00000546588 RNF39Q9H2S5 420 aa19.12■□□□□ 0.65
VPS29-203ENST00000546588 DNAJC5BQ9UF47 199 aa18.93■□□□□ 0.62
VPS29-203ENST00000546588 NCBP3Q53F19 620 aaKnown RBP18.87■□□□□ 0.61
VPS29-203ENST00000546588 C1QBPQ07021 282 aaKnown RBP18.81■□□□□ 0.6
VPS29-203ENST00000546588 NPM3O75607 178 aaKnown RBP18.67■□□□□ 0.58
VPS29-203ENST00000546588 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.45■□□□□ 0.54
VPS29-203ENST00000546588 KCNA4P22459 653 aa18.15■□□□□ 0.5
VPS29-203ENST00000546588 U3KPZ7 1027 aaPredicted RBP18.15■□□□□ 0.5
VPS29-203ENST00000546588 SLC4A2P04920 1241 aa17.91■□□□□ 0.46
VPS29-203ENST00000546588 SPINK5Q9NQ38 1064 aaPredicted RBP17.9■□□□□ 0.46
VPS29-203ENST00000546588 DSG3P32926 999 aa17.85■□□□□ 0.45
VPS29-203ENST00000546588 CAPN15O75808 1086 aa17.79■□□□□ 0.44
VPS29-203ENST00000546588 EHMT2Q96KQ7 1210 aa17.54■□□□□ 0.4
VPS29-203ENST00000546588 APLP2Q06481 763 aa17.53■□□□□ 0.4
VPS29-203ENST00000546588 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.51■□□□□ 0.39
VPS29-203ENST00000546588 HNRNPUL2Q1KMD3 747 aaKnown RBP17.51■□□□□ 0.39
VPS29-203ENST00000546588 ZNF219Q9P2Y4 722 aaPredicted RBP17.49■□□□□ 0.39
VPS29-203ENST00000546588 TRHP20396 242 aaPredicted RBP17.48■□□□□ 0.39
VPS29-203ENST00000546588 CCDC180Q9P1Z9 1646 aa17.47■□□□□ 0.39
VPS29-203ENST00000546588 SAMD1Q6SPF0 538 aaPredicted RBP17.42■□□□□ 0.38
VPS29-203ENST00000546588 POTEHQ6S545 545 aa17.4■□□□□ 0.38
VPS29-203ENST00000546588 ABCB7O75027 752 aa17.38■□□□□ 0.37
VPS29-203ENST00000546588 MYCNP04198 464 aaPredicted RBP17.24■□□□□ 0.35
VPS29-203ENST00000546588 SLC4A1APQ9BWU0 796 aaKnown RBP17.05■□□□□ 0.32
VPS29-203ENST00000546588 POLA2Q14181 598 aa17.02■□□□□ 0.32
VPS29-203ENST00000546588 FOXD4L1Q9NU39 408 aa16.98■□□□□ 0.31
VPS29-203ENST00000546588 RBM42Q9BTD8 480 aaKnown RBP16.97■□□□□ 0.31
VPS29-203ENST00000546588 ATF5Q9Y2D1 282 aaPredicted RBP16.9■□□□□ 0.3
VPS29-203ENST00000546588 CSRNP3Q8WYN3 585 aa16.82■□□□□ 0.28
VPS29-203ENST00000546588 ZBTB22O15209 634 aa16.74■□□□□ 0.27
VPS29-203ENST00000546588 CHRDL2Q6WN34 429 aa16.67■□□□□ 0.26
VPS29-203ENST00000546588 ZBTB12Q9Y330 459 aaPredicted RBP16.66■□□□□ 0.26
VPS29-203ENST00000546588 ZCCHC6Q5VYS8 1495 aaKnown RBP16.59■□□□□ 0.25
VPS29-203ENST00000546588 AKT1S1Q96B36 256 aa16.58■□□□□ 0.24
VPS29-203ENST00000546588 ATXN8OSP0DMR3 200 aa16.52■□□□□ 0.24
VPS29-203ENST00000546588 DCAF1Q9Y4B6 1507 aa16.49■□□□□ 0.23
VPS29-203ENST00000546588 OSCARQ8IYS5 282 aa16.48■□□□□ 0.23
VPS29-203ENST00000546588 REM2Q8IYK8 340 aaPredicted RBP16.42■□□□□ 0.22
VPS29-203ENST00000546588 MYO15BQ96JP2 1530 aa16.36■□□□□ 0.21
VPS29-203ENST00000546588 PIP4P2Q8N4L2 257 aa16.27■□□□□ 0.2
VPS29-203ENST00000546588 PITPNM1O00562 1244 aa16.24■□□□□ 0.19
VPS29-203ENST00000546588 FXR2P51116 673 aaKnown RBP eCLIP16.19■□□□□ 0.18
VPS29-203ENST00000546588 ABCC9O60706 1549 aa16.16■□□□□ 0.18
VPS29-203ENST00000546588 SPDYE2BA6NHP3 402 aa16.16■□□□□ 0.18
VPS29-203ENST00000546588 SPDYE6P0CI01 402 aa16.16■□□□□ 0.18
VPS29-203ENST00000546588 SPDYE2Q495Y8 402 aa16.16■□□□□ 0.18
VPS29-203ENST00000546588 NACADO15069 1562 aa16.16■□□□□ 0.18
VPS29-203ENST00000546588 FBLN2P98095 1184 aa16.14■□□□□ 0.17
VPS29-203ENST00000546588 SP7Q8TDD2 431 aaPredicted RBP16.14■□□□□ 0.17
VPS29-203ENST00000546588 MKRN4PQ13434 485 aaPredicted RBP16.12■□□□□ 0.17
VPS29-203ENST00000546588 RB1CC1Q8TDY2 1594 aa16■□□□□ 0.15
VPS29-203ENST00000546588 SSUH2Q9Y2M2 353 aa15.98■□□□□ 0.15
VPS29-203ENST00000546588 HAX1O00165 279 aa15.93■□□□□ 0.14
VPS29-203ENST00000546588 ZNF692Q9BU19 519 aaPredicted RBP15.9■□□□□ 0.14
VPS29-203ENST00000546588 SPDYE1Q8NFV5 336 aaPredicted RBP15.88■□□□□ 0.13
VPS29-203ENST00000546588 EVX2Q03828 476 aa15.83■□□□□ 0.12
VPS29-203ENST00000546588 UNC13AQ9UPW8 1703 aa15.82■□□□□ 0.12
VPS29-203ENST00000546588 CLEC11AQ9Y240 323 aa15.8■□□□□ 0.12
VPS29-203ENST00000546588 PRKAR2AP13861 404 aaKnown RBP15.79■□□□□ 0.12
VPS29-203ENST00000546588 SCRIBQ14160 1630 aa15.72■□□□□ 0.11
VPS29-203ENST00000546588 DCAF8L2P0C7V8 631 aa15.71■□□□□ 0.11
VPS29-203ENST00000546588 C19orf67A6NJJ6 358 aa15.67■□□□□ 0.1
VPS29-203ENST00000546588 PABPN1Q86U42 306 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS29-203ENST00000546588 CHADLQ6NUI6 762 aa15.57■□□□□ 0.08
VPS29-203ENST00000546588 BICRAQ9NZM4 1560 aa15.55■□□□□ 0.08
VPS29-203ENST00000546588 PRR29P0C7W0 189 aa15.55■□□□□ 0.08
VPS29-203ENST00000546588 SHROOM4Q9ULL8 1493 aa15.54■□□□□ 0.08
VPS29-203ENST00000546588 GABBR2O75899 941 aa15.44■□□□□ 0.06
VPS29-203ENST00000546588 FARP1Q9Y4F1 1045 aaPredicted RBP15.36■□□□□ 0.05
VPS29-203ENST00000546588 CD44P16070 742 aaKnown RBP15.27■□□□□ 0.04
VPS29-203ENST00000546588 RTN4Q9NQC3 1192 aaKnown RBP15.26■□□□□ 0.03
VPS29-203ENST00000546588 BAZ1AQ9NRL2 1556 aaPredicted RBP15.25■□□□□ 0.03
VPS29-203ENST00000546588 FKBP8Q14318 412 aa15.25■□□□□ 0.03
VPS29-203ENST00000546588 AMER1Q5JTC6 1135 aaPredicted RBP15.22■□□□□ 0.03
VPS29-203ENST00000546588 SMARCA4P51532 1647 aa15.21■□□□□ 0.03
VPS29-203ENST00000546588 SPDYE4A6NLX3 237 aa15.21■□□□□ 0.03
VPS29-203ENST00000546588 CREBZFQ9NS37 354 aa15.21■□□□□ 0.03
VPS29-203ENST00000546588 STAG3Q9UJ98 1225 aa15.21■□□□□ 0.03
VPS29-203ENST00000546588 PEG3Q9GZU2 1588 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms