RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 AEBP2Q6ZN18 517 aaPredicted RBP28.15■■■□□ 2.1
VPS29-202ENST00000447578 CHIC1Q5VXU3 224 aa26.4■■□□□ 1.82
VPS29-202ENST00000447578 SENP3Q9H4L4 574 aaPredicted RBP24.26■■□□□ 1.47
VPS29-202ENST00000447578 PHF23Q9BUL5 403 aaPredicted RBP23.77■■□□□ 1.4
VPS29-202ENST00000447578 FOXD1Q16676 465 aa22.66■■□□□ 1.22
VPS29-202ENST00000447578 POTEDQ86YR6 584 aa22.66■■□□□ 1.22
VPS29-202ENST00000447578 MSH5O43196 834 aa21.64■■□□□ 1.05
VPS29-202ENST00000447578 PIAS4Q8N2W9 510 aaPredicted RBP20.98■□□□□ 0.95
VPS29-202ENST00000447578 PPP6R1Q9UPN7 881 aa20.42■□□□□ 0.86
VPS29-202ENST00000447578 ADRA2BP18089 450 aa20.33■□□□□ 0.85
VPS29-202ENST00000447578 PLPPR3Q6T4P5 718 aa20.29■□□□□ 0.84
VPS29-202ENST00000447578 CACNB1Q02641 598 aaPredicted RBP19.13■□□□□ 0.65
VPS29-202ENST00000447578 DMRT2Q9Y5R5 561 aa19.06■□□□□ 0.64
VPS29-202ENST00000447578 MAPK8IP2Q13387 824 aaPredicted RBP18.94■□□□□ 0.62
VPS29-202ENST00000447578 SCAF1Q9H7N4 1312 aaKnown RBP18.72■□□□□ 0.59
VPS29-202ENST00000447578 DCAF8L1A6NGE4 600 aa18.35■□□□□ 0.53
VPS29-202ENST00000447578 RNF39Q9H2S5 420 aa18.33■□□□□ 0.52
VPS29-202ENST00000447578 C1QBPQ07021 282 aaKnown RBP18.05■□□□□ 0.48
VPS29-202ENST00000447578 HOXD11P31277 338 aaPredicted RBP17.99■□□□□ 0.47
VPS29-202ENST00000447578 PPP4R3CPQ6ZMV5 832 aa17.73■□□□□ 0.43
VPS29-202ENST00000447578 RNF216Q9NWF9 866 aaPredicted RBP17.62■□□□□ 0.41
VPS29-202ENST00000447578 DNAJC5BQ9UF47 199 aa17.61■□□□□ 0.41
VPS29-202ENST00000447578 POTEHQ6S545 545 aa17.59■□□□□ 0.41
VPS29-202ENST00000447578 CNKSR2Q8WXI2 1034 aa17.55■□□□□ 0.4
VPS29-202ENST00000447578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.17■□□□□ 0.34
VPS29-202ENST00000447578 NCBP3Q53F19 620 aaKnown RBP17.02■□□□□ 0.32
VPS29-202ENST00000447578 NPM3O75607 178 aaKnown RBP16.85■□□□□ 0.29
VPS29-202ENST00000447578 DSG3P32926 999 aa16.85■□□□□ 0.29
VPS29-202ENST00000447578 CAPN15O75808 1086 aa16.76■□□□□ 0.27
VPS29-202ENST00000447578 SPINK5Q9NQ38 1064 aaPredicted RBP16.68■□□□□ 0.26
VPS29-202ENST00000447578 KCNA4P22459 653 aa16.66■□□□□ 0.26
VPS29-202ENST00000447578 U3KPZ7 1027 aaPredicted RBP16.66■□□□□ 0.26
VPS29-202ENST00000447578 TRHP20396 242 aaPredicted RBP16.25■□□□□ 0.19
VPS29-202ENST00000447578 ABCB7O75027 752 aa16.24■□□□□ 0.19
VPS29-202ENST00000447578 APLP2Q06481 763 aa16.22■□□□□ 0.19
VPS29-202ENST00000447578 ZNF219Q9P2Y4 722 aaPredicted RBP16.22■□□□□ 0.19
VPS29-202ENST00000447578 RBM42Q9BTD8 480 aaKnown RBP16.18■□□□□ 0.18
VPS29-202ENST00000447578 CHRDL2Q6WN34 429 aa16.14■□□□□ 0.17
VPS29-202ENST00000447578 SLC4A2P04920 1241 aa16.08■□□□□ 0.16
VPS29-202ENST00000447578 SP7Q8TDD2 431 aaPredicted RBP16.06■□□□□ 0.16
VPS29-202ENST00000447578 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.95■□□□□ 0.14
VPS29-202ENST00000447578 HNRNPUL2Q1KMD3 747 aaKnown RBP15.95■□□□□ 0.14
VPS29-202ENST00000447578 SAMD1Q6SPF0 538 aaPredicted RBP15.79■□□□□ 0.12
VPS29-202ENST00000447578 SLC4A1APQ9BWU0 796 aaKnown RBP15.72■□□□□ 0.11
VPS29-202ENST00000447578 POLA2Q14181 598 aa15.59■□□□□ 0.09
VPS29-202ENST00000447578 AKT1S1Q96B36 256 aa15.58■□□□□ 0.08
VPS29-202ENST00000447578 HAX1O00165 279 aa15.54■□□□□ 0.08
VPS29-202ENST00000447578 PIP4P2Q8N4L2 257 aa15.54■□□□□ 0.08
VPS29-202ENST00000447578 MYCNP04198 464 aaPredicted RBP15.53■□□□□ 0.08
VPS29-202ENST00000447578 FOXD4L1Q9NU39 408 aa15.45■□□□□ 0.06
VPS29-202ENST00000447578 REM2Q8IYK8 340 aaPredicted RBP15.4■□□□□ 0.06
VPS29-202ENST00000447578 ZBTB22O15209 634 aa15.35■□□□□ 0.05
VPS29-202ENST00000447578 FXR2P51116 673 aaKnown RBP eCLIP15.31■□□□□ 0.04
VPS29-202ENST00000447578 ATF5Q9Y2D1 282 aaPredicted RBP15.27■□□□□ 0.04
VPS29-202ENST00000447578 ZBTB12Q9Y330 459 aaPredicted RBP15.26■□□□□ 0.03
VPS29-202ENST00000447578 PITPNM1O00562 1244 aa15.24■□□□□ 0.03
VPS29-202ENST00000447578 EVX2Q03828 476 aa15.2■□□□□ 0.02
VPS29-202ENST00000447578 OSCARQ8IYS5 282 aa15.11■□□□□ 0.01
VPS29-202ENST00000447578 LHX8Q68G74 356 aa15.05■□□□□ -0
VPS29-202ENST00000447578 ATXN8OSP0DMR3 200 aa14.91□□□□□ -0.02
VPS29-202ENST00000447578 PLSCR2Q9NRY7 297 aa14.89□□□□□ -0.03
VPS29-202ENST00000447578 GABBR2O75899 941 aa14.86□□□□□ -0.03
VPS29-202ENST00000447578 PRKAR2AP13861 404 aaKnown RBP14.86□□□□□ -0.03
VPS29-202ENST00000447578 C19orf67A6NJJ6 358 aa14.85□□□□□ -0.03
VPS29-202ENST00000447578 CSRNP3Q8WYN3 585 aa14.73□□□□□ -0.05
VPS29-202ENST00000447578 SPDYE2BA6NHP3 402 aa14.69□□□□□ -0.06
VPS29-202ENST00000447578 SPDYE6P0CI01 402 aa14.69□□□□□ -0.06
VPS29-202ENST00000447578 SPDYE2Q495Y8 402 aa14.69□□□□□ -0.06
VPS29-202ENST00000447578 CLEC11AQ9Y240 323 aa14.68□□□□□ -0.06
VPS29-202ENST00000447578 SPDYE1Q8NFV5 336 aaPredicted RBP14.67□□□□□ -0.06
VPS29-202ENST00000447578 EHMT2Q96KQ7 1210 aa14.63□□□□□ -0.07
VPS29-202ENST00000447578 FBLN2P98095 1184 aa14.56□□□□□ -0.08
VPS29-202ENST00000447578 MKRN4PQ13434 485 aaPredicted RBP14.54□□□□□ -0.08
VPS29-202ENST00000447578 POTEIP0CG38 1075 aa14.5□□□□□ -0.09
VPS29-202ENST00000447578 CHADLQ6NUI6 762 aa14.45□□□□□ -0.1
VPS29-202ENST00000447578 CLCN6P51797 869 aa14.4□□□□□ -0.1
VPS29-202ENST00000447578 ZNF692Q9BU19 519 aaPredicted RBP14.35□□□□□ -0.11
VPS29-202ENST00000447578 SSUH2Q9Y2M2 353 aa14.34□□□□□ -0.11
VPS29-202ENST00000447578 CD44P16070 742 aaKnown RBP14.33□□□□□ -0.12
VPS29-202ENST00000447578 PRR29P0C7W0 189 aa14.32□□□□□ -0.12
VPS29-202ENST00000447578 DCBLD2Q96PD2 775 aa14.31□□□□□ -0.12
VPS29-202ENST00000447578 POTEMA6NI47 508 aa14.22□□□□□ -0.13
VPS29-202ENST00000447578 FARP1Q9Y4F1 1045 aaPredicted RBP14.17□□□□□ -0.14
VPS29-202ENST00000447578 OTUD5Q96G74 571 aa14.16□□□□□ -0.14
VPS29-202ENST00000447578 POTEGQ6S5H5 508 aa14.14□□□□□ -0.15
VPS29-202ENST00000447578 PABPN1Q86U42 306 aaKnown RBP eCLIP14.11□□□□□ -0.15
VPS29-202ENST00000447578 PCDH10Q9P2E7 1040 aa14.11□□□□□ -0.15
VPS29-202ENST00000447578 ZNF579Q8NAF0 562 aaKnown RBP14.06□□□□□ -0.16
VPS29-202ENST00000447578 POTEB2H3BUK9 544 aa14□□□□□ -0.17
VPS29-202ENST00000447578 ZRANB1Q9UGI0 708 aa13.98□□□□□ -0.17
VPS29-202ENST00000447578 GALR2O43603 387 aaPredicted RBP13.93□□□□□ -0.18
VPS29-202ENST00000447578 SPDYE4A6NLX3 237 aa13.89□□□□□ -0.19
VPS29-202ENST00000447578 PAK3O75914 559 aaPredicted RBP13.73□□□□□ -0.21
VPS29-202ENST00000447578 MAMSTRQ6ZN01 415 aa13.72□□□□□ -0.21
VPS29-202ENST00000447578 PELP1Q8IZL8 1130 aaKnown RBP13.72□□□□□ -0.21
VPS29-202ENST00000447578 CREBZFQ9NS37 354 aa13.68□□□□□ -0.22
VPS29-202ENST00000447578 STAG3Q9UJ98 1225 aa13.68□□□□□ -0.22
VPS29-202ENST00000447578 FAM163AQ96GL9 167 aaPredicted RBP13.67□□□□□ -0.22
VPS29-202ENST00000447578 PHF12Q96QT6 1004 aa13.67□□□□□ -0.22
VPS29-202ENST00000447578 METRNQ9UJH8 293 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 111.6 ms