Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.162e-6■■■□□ 18.3
YBX3P16989 LANCL1-201ENST00000233714 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.382e-6■■■□□ 18.3
YBX3P16989 LANCL1-207ENST00000450366 4602 ntAPPRIS P1 TSL 1 (best) BASIC11.34□□□□□ -0.592e-6■■■□□ 18.3
YBX3P16989 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.522e-6■■■□□ 18.3
YBX3P16989 APEX2-202ENST00000471758 728 ntTSL 213.18□□□□□ -0.34e-6■■■□□ 18.3
YBX3P16989 APEX2-201ENST00000374987 3245 ntAPPRIS P1 TSL 1 (best) BASIC8.58□□□□□ -1.044e-6■■■□□ 18.3
YBX3P16989 NT5DC1-203ENST00000419791 667 ntTSL 319.09■□□□□ 0.656e-8■■■□□ 18.2
YBX3P16989 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.096e-8■■■□□ 18.2
YBX3P16989 AC024293.1-201ENST00000467930 498 ntBASIC18.73■□□□□ 0.592e-17■■■□□ 18.2
YBX3P16989 AMBRA1-201ENST00000314845 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.442e-17■■■□□ 18.2
YBX3P16989 AMBRA1-212ENST00000534300 5067 ntTSL 1 (best) BASIC12.27□□□□□ -0.442e-17■■■□□ 18.2
YBX3P16989 AMBRA1-211ENST00000533727 4817 ntTSL 1 (best) BASIC11.57□□□□□ -0.562e-17■■■□□ 18.2
YBX3P16989 AMBRA1-202ENST00000458649 5351 ntTSL 2 BASIC10.91□□□□□ -0.662e-17■■■□□ 18.2
YBX3P16989 AMBRA1-206ENST00000528950 4102 ntTSL 5 BASIC8.7□□□□□ -1.022e-17■■■□□ 18.2
YBX3P16989 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.073e-8■■■□□ 18.2
YBX3P16989 HCFC1-202ENST00000369984 8375 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.43e-8■■■□□ 18.2
YBX3P16989 FBXO18-204ENST00000460453 634 ntTSL 213.05□□□□□ -0.325e-11■■■□□ 18.2
YBX3P16989 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.482e-14■■■□□ 18.2
YBX3P16989 RMI2-205ENST00000576027 818 ntTSL 2 BASIC26.09■■□□□ 1.772e-14■■■□□ 18.2
YBX3P16989 RMI2-202ENST00000572173 1865 ntTSL 1 (best) BASIC13.29□□□□□ -0.282e-14■■■□□ 18.2
YBX3P16989 MSN-201ENST00000360270 3944 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.047e-10■■■□□ 18.2
YBX3P16989 CCDC106-208ENST00000592996 741 ntTSL 325.15■■□□□ 1.621e-7■■■□□ 18.2
YBX3P16989 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.711e-7■■■□□ 18.2
YBX3P16989 ZNF581-201ENST00000270451 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -01e-7■■■□□ 18.2
YBX3P16989 ZNF581-204ENST00000588537 1100 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -01e-7■■■□□ 18.2
YBX3P16989 FOXK1-203ENST00000496023 1928 ntTSL 221.19■□□□□ 0.982e-7■■■□□ 18.2
YBX3P16989 CAST-235ENST00000511097 1399 ntTSL 522.2■■□□□ 1.145e-8■■■□□ 18.2
YBX3P16989 CAST-221ENST00000508197 567 ntTSL 316.05■□□□□ 0.165e-8■■■□□ 18.2
YBX3P16989 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.155e-8■■■□□ 18.2
YBX3P16989 CAST-208ENST00000421689 913 ntTSL 514.57□□□□□ -0.085e-8■■■□□ 18.2
YBX3P16989 CAST-233ENST00000510756 2310 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.155e-8■■■□□ 18.2
YBX3P16989 CAST-206ENST00000395812 4506 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.225e-8■■■□□ 18.2
YBX3P16989 CAST-223ENST00000508608 2425 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.295e-8■■■□□ 18.2
YBX3P16989 CAST-220ENST00000508117 571 ntTSL 513.15□□□□□ -0.35e-8■■■□□ 18.2
YBX3P16989 CAST-239ENST00000513666 1539 ntTSL 212.98□□□□□ -0.335e-8■■■□□ 18.2
YBX3P16989 CAST-241ENST00000514845 588 ntTSL 412.49□□□□□ -0.415e-8■■■□□ 18.2
YBX3P16989 CAST-230ENST00000510156 2079 ntAPPRIS ALT2 TSL 511.41□□□□□ -0.585e-8■■■□□ 18.2
YBX3P16989 CAST-213ENST00000504465 2336 ntAPPRIS ALT2 TSL 2 BASIC9.11□□□□□ -0.955e-8■■■□□ 18.2
YBX3P16989 CAST-215ENST00000505143 864 ntTSL 38.61□□□□□ -1.035e-8■■■□□ 18.2
YBX3P16989 CAST-236ENST00000511782 2466 ntAPPRIS ALT2 TSL 2 BASIC8.31□□□□□ -1.085e-8■■■□□ 18.2
YBX3P16989 CAST-234ENST00000511049 3273 ntAPPRIS ALT2 TSL 5 BASIC8.27□□□□□ -1.095e-8■■■□□ 18.2
YBX3P16989 CAST-204ENST00000341926 2487 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.115e-8■■■□□ 18.2
YBX3P16989 CAST-228ENST00000509903 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.175e-8■■■□□ 18.2
YBX3P16989 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC7.3□□□□□ -1.245e-8■■■□□ 18.2
YBX3P16989 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.485e-8■■■□□ 18.2
YBX3P16989 CAST-238ENST00000512620 904 ntTSL 54.91□□□□□ -1.625e-8■■■□□ 18.2
YBX3P16989 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.645e-8■■■□□ 18.2
YBX3P16989 CS-203ENST00000546585 1803 ntTSL 27.93□□□□□ -1.144e-9■■■□□ 18.2
YBX3P16989 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC23.96■■□□□ 1.431e-8■■■□□ 18.2
YBX3P16989 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.431e-8■■■□□ 18.2
YBX3P16989 NME1-206ENST00000475573 781 ntTSL 321.86■■□□□ 1.091e-8■■■□□ 18.2
YBX3P16989 NME1-209ENST00000511355 1645 ntTSL 5 BASIC16.93■□□□□ 0.31e-8■■■□□ 18.2
YBX3P16989 TMEM87A-203ENST00000448392 3049 ntTSL 1 (best) BASIC9.11□□□□□ -0.955e-6■■■□□ 18.2
YBX3P16989 TMEM87A-202ENST00000389834 3109 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.035e-6■■■□□ 18.2
YBX3P16989 ZNF672-203ENST00000428515 930 ntTSL 218.14■□□□□ 0.496e-7■■■□□ 18.2
YBX3P16989 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.812e-7■■■□□ 18.2
YBX3P16989 INSR-205ENST00000598216 2961 ntTSL 1 (best)14.49□□□□□ -0.092e-7■■■□□ 18.2
YBX3P16989 GCAT-203ENST00000415371 552 ntTSL 428.78■■■□□ 2.21e-7■■■□□ 18.2
YBX3P16989 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.747e-7■■■□□ 18.2
YBX3P16989 ATP6V1D-209ENST00000555431 1085 ntTSL 5 BASIC15.13■□□□□ 0.017e-7■■■□□ 18.2
YBX3P16989 ATP6V1D-210ENST00000555474 1102 ntTSL 5 BASIC15.13■□□□□ 0.017e-7■■■□□ 18.2
YBX3P16989 ATP6V1D-205ENST00000554087 1750 ntTSL 513.29□□□□□ -0.287e-7■■■□□ 18.2
YBX3P16989 SLC19A1-210ENST00000486303 708 ntTSL 227.91■■■□□ 2.064e-7■■■□□ 18.2
YBX3P16989 KPNB1-213ENST00000583013 742 ntTSL 310.53□□□□□ -0.722e-7■■■□□ 18.2
YBX3P16989 KPNB1-208ENST00000580019 427 ntTSL 26.93□□□□□ -1.32e-7■■■□□ 18.2
YBX3P16989 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.172e-6■■■□□ 18.2
YBX3P16989 PYGL-203ENST00000530336 1459 ntTSL 1 (best)17.53■□□□□ 0.41e-7■■■□□ 18.2
YBX3P16989 METTL9-203ENST00000562379 701 ntTSL 228.65■■■□□ 2.182e-9■■■□□ 18.2
YBX3P16989 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC26.69■■□□□ 1.862e-9■■■□□ 18.2
YBX3P16989 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.382e-9■■■□□ 18.2
YBX3P16989 METTL9-207ENST00000567404 763 ntTSL 38.01□□□□□ -1.132e-9■■■□□ 18.2
YBX3P16989 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC7.45□□□□□ -1.222e-9■■■□□ 18.2
YBX3P16989 METTL9-204ENST00000562961 785 ntTSL 26.79□□□□□ -1.322e-10■■■□□ 18.2
YBX3P16989 METTL9-208ENST00000568826 376 ntTSL 34.89□□□□□ -1.632e-10■■■□□ 18.2
YBX3P16989 IMMT-209ENST00000474969 1431 ntTSL 517.35■□□□□ 0.371e-13■■■□□ 18.2
YBX3P16989 IMMT-203ENST00000409258 1408 ntTSL 1 (best)17.35■□□□□ 0.371e-13■■■□□ 18.2
YBX3P16989 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.94■□□□□ 0.942e-6■■■□□ 18.1
YBX3P16989 CLK3-216ENST00000564468 929 ntTSL 317.59■□□□□ 0.412e-6■■■□□ 18.1
YBX3P16989 CLK3-213ENST00000563842 860 ntTSL 517.4■□□□□ 0.382e-6■■■□□ 18.1
YBX3P16989 CLK3-218ENST00000566926 646 ntTSL 517.4■□□□□ 0.382e-6■■■□□ 18.1
YBX3P16989 CLK3-204ENST00000483723 1749 ntTSL 215.99■□□□□ 0.152e-6■■■□□ 18.1
YBX3P16989 CLK3-203ENST00000454830 3787 ntTSL 514.9□□□□□ -0.022e-6■■■□□ 18.1
YBX3P16989 CLK3-201ENST00000345005 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.12e-6■■■□□ 18.1
YBX3P16989 CLK3-206ENST00000562078 2455 ntTSL 214.28□□□□□ -0.122e-6■■■□□ 18.1
YBX3P16989 CLK3-226ENST00000569406 3591 ntTSL 210.65□□□□□ -0.72e-6■■■□□ 18.1
YBX3P16989 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.142e-6■■■□□ 18.1
YBX3P16989 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.492e-6■■■□□ 18.1
YBX3P16989 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.024e-8■■■□□ 18.1
YBX3P16989 CASC3-202ENST00000394114 2792 ntTSL 26.63□□□□□ -1.354e-8■■■□□ 18.1
YBX3P16989 DCTN4-203ENST00000447998 4208 ntAPPRIS P3 TSL 1 (best) BASIC9.6□□□□□ -0.872e-6■■■□□ 18.1
YBX3P16989 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC6.43□□□□□ -1.382e-6■■■□□ 18.1
YBX3P16989 HMG20A-209ENST00000559728 981 ntTSL 211.41□□□□□ -0.582e-6■■■□□ 18.1
YBX3P16989 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.242e-6■■■□□ 18.1
YBX3P16989 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.352e-6■■■□□ 18.1
YBX3P16989 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.053e-7■■■□□ 18.1
YBX3P16989 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.314e-6■■■□□ 18.1
YBX3P16989 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC26.45■■□□□ 1.822e-8■■■□□ 18.1
YBX3P16989 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC24.58■■□□□ 1.532e-8■■■□□ 18.1
YBX3P16989 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC24.58■■□□□ 1.532e-8■■■□□ 18.1
YBX3P16989 AP2S1-209ENST00000601498 898 ntTSL 2 BASIC15.18■□□□□ 0.022e-8■■■□□ 18.1
Retrieved 100 of 29,075 protein–RNA pairs in 407.1 ms